Chy1G009550.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy1G009550.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH01: 9439118 .. 9440056 (-)
Sequence length	449
RNA-Seq Expression	Chy1G009550.1
Synteny	Chy1G009550.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTTCATCGGGTCACAAATCCATTGGATCTGGCATAATCTAAACTTTGGCGTCTACCAACTTGCTGATTGGACGGTTACTAACCACACTTGTCGTCTTGTGGTTTCGTCTCATTGTCTGTTCATTGCGTGGTCTTTTGGTTCGTCGCTTGATGTGTTGACCAAATGAAAGTATTGATTCACCGCTTTTCTTCATATTTTCTTTGATGTTTCTGATCTCTTCTTTAATCATAATCTTGCGTTGAAAACATTAAAACAAACAAACATTGTAATCTTTTGTACACTTGTGTTGGCATAGTACAATTTTCATATAAATTCATCACATTTCAATACTTTAAATCTCAATTTAGATTGGTTAACTTGTACTTTTACAAGTTATGATGTGGTGTCTAGTTTTTCTTGTGTAGTTCATAAGCAACTAGCATATCCGAACCGCTTAAAAGTCTGAACCGAAGAATAAACCGCGTCGTCGGCACAAAAGGGCTGAAAAACTTAGAATTTTTTTGGAAAAAATGGGACCAATTTAGACCGCTGGTGTAGAAAAAAAAGAAAAGAAAAAGAAAAAGAAAAGAAACCTTCTTCTACTGCCCTCCCGCCTCTTGGATTTTGGAGTTTCCATTCCAGTTACATTTTCTCTGCACCACATTTTCTTTCTTTGCTCAAGTATGTCTCTCTCTCTCTCCTAATCTCTTGTTTCTCTTCATTCTGTTTATTCTCTTTTAAATTCATTTTTCAAATATCTGTTTGGTTGCTGAGAAAACTGTGCTGGGAAACGTACAAGCATCGAGTGTTTTCGATTTCTCTAGTTCATTATTCAGCATTTTGTTTAGGAACTACTGGATTAGTTTGAATTAACTGTTTATTTGTTTAATACGTCGAACTCAAGGTATTTCTCAGACACCGGAAGTTGAAGAGAGGATTTTACTGCCAGTGGTAT

mRNA sequence

ATGTCGTTCATCGGGTCACAAATCCATTGGATCTGGCATAATCTAAACTTTGGCGTCTACCAACTTGCTGATTGGACGGTTACTAACCACACTTGTCGTCTTGTGGTTTCGTCTCATTGTCTGTTCATTGCGTGGTCTTTTGTTCATAAGCAACTAGCATATCCGAACCGCTTAAAAGTCTGAACCGAAGAATAAACCGCGTCGTCGGCACAAAAGGGCTGAAAAACTTAGAATTTTTTTGGAAAAAATGGGACCAATTTAGACCGCTGGTGTAGAAAAAAAAGAAAAGAAAAAGAAAAAGAAAAGAAACCTTCTTCTACTGCCCTCCCGCCTCTTGGATTTTGGAGTTTCCATTCCAGTTACATTTTCTCTGCACCACATTTTCTTTCTTTGCTCAAGTATTTCTCAGACACCGGAAGTTGAAGAGAGGATTTTACTGCCAGTGGTAT

Coding sequence (CDS)

ATGTCGTTCATCGGGTCACAAATCCATTGGATCTGGCATAATCTAAACTTTGGCGTCTACCAACTTGCTGATTGGACGGTTACTAACCACACTTGTCGTCTTGTGGTTTCGTCTCATTGTCTGTTCATTGCGTGGTCTTTTGTTCATAAGCAACTAGCATATCCGAACCGCTTAAAAGTCTGAACCGAAGAATAAACCGCGTCGTCGGCACAAAAGGGCTGAAAAACTTAGAATTTTTTTGGAAAAAATGGGACCAATTTAGACCGCTGGTGTAGAAAAAAAAGAAAAGAAAAAGAAAAAGAAAAGAAACCTTCTTCTACTGCCCTCCCGCCTCTTGGATTTTGGAGTTTCCATTCCAGTTACATTTTCTCTGCACCACATTTTCTTTCTTTGCTCAAGTATTTCTCAGACACCGGAAGTTGAAGAGAGGATTTTACTGCCAGTGGTAT

Protein sequence

MSFIGSQIHWIWHNLNFGVYQLADWTVTNHTCRLVVSSHCLFIAWSFVHKQLAYPNRLKV*TEE*TASSAQKG*KT*NFFGKNGTNLDRWCRKKRKEKEKEKKPSSTALPPLGFWSFHSSYIFSAPHFLSLLKYFSDTGS*REDFTASGX

Homology

[Close]

BLAST of Chy1G009550.1 vs. ExPASy TrEMBL
Match: A0A0A0K8R9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G219220 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 7.0e-54
Identity = 110/138 (79.71%), Postives = 112/138 (81.16%), Query Frame = 0


Query: 1   MSFIGSQIHWIWHNLNFGVYQLADWTVTNHTCRLVVSSHCLFIAWSFVHKQLAYPNRLKV 60
           MS I SQIHWIWHNLNFGVYQLADWT TNH+CRLVVSSHCLFI WSF HKQ AYPNRLK 
Sbjct: 1   MSLITSQIHWIWHNLNFGVYQLADWTFTNHSCRLVVSSHCLFIPWSFDHKQPAYPNRLKR 60

Query: 61  *TEE*TASSAQK-G*KT*NFFGKNGTNLDRWCR--KKRKEKEKEKKPSSTALPPLGFWSF 120
              +       K   KT  FFGKNGTNLDRWCR  KKRKEKEKEKKPSSTALPPLGFWSF
Sbjct: 61  SDPKNKPRRRHKRAEKTQIFFGKNGTNLDRWCRKKKKRKEKEKEKKPSSTALPPLGFWSF 120

Query: 121 HSSYIFSAPHFLSLLKYF 136
           HSS IFS PHFLSLLKYF
Sbjct: 121 HSSCIFSTPHFLSLLKYF 138

[Close]

BLAST of Chy1G009550.1 vs. NCBI nr
Match: KAE8646064.1 (hypothetical protein Csa_016379, partial [Cucumis sativus])

HSP 1 Score: 218 bits (555), Expect = 4.06e-70
Identity = 110/138 (79.71%), Postives = 112/138 (81.16%), Query Frame = 0


Query: 1   MSFIGSQIHWIWHNLNFGVYQLADWTVTNHTCRLVVSSHCLFIAWSFVHKQLAYPNRLKV 60
           MS I SQIHWIWHNLNFGVYQLADWT TNH+CRLVVSSHCLFI WSF HKQ AYPNRLK 
Sbjct: 1   MSLITSQIHWIWHNLNFGVYQLADWTFTNHSCRLVVSSHCLFIPWSFDHKQPAYPNRLKR 60

Query: 61  *TEE*TASSAQK-G*KT*NFFGKNGTNLDRWCRKK--RKEKEKEKKPSSTALPPLGFWSF 120
              +       K   KT  FFGKNGTNLDRWCRKK  RKEKEKEKKPSSTALPPLGFWSF
Sbjct: 61  SDPKNKPRRRHKRAEKTQIFFGKNGTNLDRWCRKKKKRKEKEKEKKPSSTALPPLGFWSF 120

Query: 121 HSSYIFSAPHFLSLLKYF 135
           HSS IFS PHFLSLLKYF
Sbjct: 121 HSSCIFSTPHFLSLLKYF 138

The following BLAST results are available for this feature:

BLAST of Chy1G009550.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy1G009550.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8R9	7.0e-54	79.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G219220 PE=4 SV=1	[more]

BLAST of Chy1G009550.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646064.1	4.06e-70	79.71	hypothetical protein Csa_016379, partial [Cucumis sativus]	[more]

BLAST of Chy1G009550.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy1G009550	Chy1G009550	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy1G009550.1.exon3	Chy1G009550.1.exon3	exon
Chy1G009550.1.exon2	Chy1G009550.1.exon2	exon
Chy1G009550.1.exon1	Chy1G009550.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy1G009550.1.cds3	Chy1G009550.1.cds3	CDS
Chy1G009550.1.cds2	Chy1G009550.1.cds2	CDS
Chy1G009550.1.cds1	Chy1G009550.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy1G009550.1	Chy1G009550.1-protein	polypeptide