Chy12G214960 (gene) Cucumber (hystrix) v1

Overview


Name	Chy12G214960
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH12: 14348970 .. 14349342 (-)
RNA-Seq Expression	Chy12G214960
Synteny	Chy12G214960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCAAACAAGCTCAACCACCGCCCGCCATCTGCCATCCGCTGCCGTCAAATCCCCACATTCTCGCCCCCTTCTTACTCCTTCACTCTACTCTCATCACTCAATTTCCATTTCTTCCACCGATTCCCTCCATTTCAACCGCAATTTCAATGAATTCCAACAAAGACCCGAGGAAGCGGCAGGCGGAATTGCCGCCTCGACGGGGTTTGATCAAGATCAAGATCTTCCGGAGCATTTTCAGGACGGTCAAATCCATACCGGAAGGATTCGCAAGAAGCCGGCGGGAAGACGAAACTCTAACTTCGACTTCCACTTCGACAACGCCGGCTCCAGGTACGAGCGGGTATAACTCGGAAGCTCAGTCCGAGTCATGA

mRNA sequence

GTTCAAACAAGCTCAACCACCGCCCGCCATCTGCCATCCGCTGCCGTCAAATCCCCACATTCTCGCCCCCTTCTTACTCCTTCACTCTACTCTCATCACTCAATTTCCATTTCTTCCACCGATTCCCTCCATTTCAACCGCAATTTCAATGAATTCCAACAAAGACCCGAGGAAGCGGCAGGCGGAATTGCCGCCTCGACGGGGTTTGATCAAGATCAAGATCTTCCGGAGCATTTTCAGGACGGTCAAATCCATACCGGAAGGATTCGCAAGAAGCCGGCGGGAAGACGAAACTCTAACTTCGACTTCCACTTCGACAACGCCGGCTCCAGGTACGAGCGGGTATAACTCGGAAGCTCAGTCCGAGTCATGA

Coding sequence (CDS)

GTTCAAACAAGCTCAACCACCGCCCGCCATCTGCCATCCGCTGCCGTCAAATCCCCACATTCTCGCCCCCTTCTTACTCCTTCACTCTACTCTCATCACTCAATTTCCATTTCTTCCACCGATTCCCTCCATTTCAACCGCAATTTCAATGAATTCCAACAAAGACCCGAGGAAGCGGCAGGCGGAATTGCCGCCTCGACGGGGTTTGATCAAGATCAAGATCTTCCGGAGCATTTTCAGGACGGTCAAATCCATACCGGAAGGATTCGCAAGAAGCCGGCGGGAAGACGAAACTCTAACTTCGACTTCCACTTCGACAACGCCGGCTCCAGGTACGAGCGGGTATAACTCGGAAGCTCAGTCCGAGTCATGA

Protein sequence

VQTSSTTARHLPSAAVKSPHSRPLLTPSLYSHHSISISSTDSLHFNRNFNEFQQRPEEAAGGIAASTGFDQDQDLPEHFQDGQIHTGRIRKKPAGRRNSNFDFHFDNAGSRYERV*LGSSVRVMX

Homology

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BLAST of Chy12G214960 vs. NCBI nr
Match: KAG6583473.1 (hypothetical protein SDJN03_19405, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.0 bits (219), Expect = 1.91e-19
Identity = 58/101 (57.43%), Postives = 67/101 (66.34%), Query Frame = 0


Query: 12  PSAAVKSPHSRPLLTPSLYSHHSISISSTDSLHFNRNFNEFQQRPEEAAGGIAASTGFDQ 71
           P AAV+S  SR LLTPSL S  SISISS+DS   NRNFNE QQR E+A    AA    DQ
Sbjct: 66  PPAAVESAASRCLLTPSLCSDRSISISSSDS---NRNFNELQQRTEKAILRPAAEKRTDQ 125

Query: 72  DQDLPEHFQDGQIHTGRIRKKPAGRRNSNFDFHFDNAGSRY 112
           D D P+H ++ QI  GR RKK   + NSNF F  D+AG+RY
Sbjct: 126 DHDHPKHHRNLQIDAGRNRKKRERKGNSNFGF--DHAGARY 161

The following BLAST results are available for this feature:

BLAST of Chy12G214960 vs.


Match Name	E-value	Identity	Description

BLAST of Chy12G214960 vs.


Match Name	E-value	Identity	Description

BLAST of Chy12G214960 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583473.1	1.91e-19	57.43	hypothetical protein SDJN03_19405, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Chy12G214960 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy12G214960.1	Chy12G214960.1	mRNA