Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATGGTTAAATCACGATTCACGACCTTCCCCTCAACGTAACTTTCGTGTCAAAGTTGTGCAAGATACCGAAGGTCCTAGTAGGTTAGTTTATATCATTAGACTCGTGCCTGAGCTCTCAAGAAATTACTTTCGAAGTCCTTCAAGGAGGGTCCTTTTTGGATGAATCTCATTGTTGGGTGGCTTTTATGTGGCACAAAATATCTCATTGTCATTTGGAGCTTTTGGAGTAAATGATGTTTTTGCTACTGTGGTATGCATTCTCCTTACCGATGTTACTCGATTTTATTACAATCGACCAAAGGTAACTTTCCCCATTGCTCTACTGAACAACTTCAAAATGGGATTCACTTGTGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAACAGCACTTGAAGAAACCATTCTGGTGGTAGCTATAGCATTTACATTTGTAAAGTTCTTTGAGCAATAATTTTGGTCTTACTCTATATCTTTACAGCTTGTTCTAATTCTTTTCGTTGAAATTTTTTCCATTTTCCCCTTTGTTTCTTCTGTATATTTTCAACATACGGTTTTCATTGGAGAATTAAATGTTCTATACACCCTCAAATCAAATATAGTAACAAATTTGAATGTAATTGATGAGTTTTAAGAGTTTAATTCTTGTTTGTGTATTGAAATGCATCCCTTGCAATGGAGAATTGTTTGGAAACCATGAATCCAGTGTTAACTATCAGCGACAAATTTAAGATGGTAAGTTGTTAATAAGATACAAGCTTTCACCTAGTGTACTTCAACAGAACCATAACGTGTAGTCTCTTGGCATTATTGTGTTTACTATTGTTGTTAAGAGTATCTCTTATCTTTTGGTTTGATTCATAGATAAGCTTCAGATGTATTGAAATTTATGCTGATACATAATTTAAATGATATTGATCTTACCTTCGTATCTTTTGGTTTGATTCAAGGCTTTTGTAGTCTATATTTTGTGAATAACTGGCATTTCTTTCAAACTTTCATATAAATATTTGTTTTAAATCTCTTTTGTAGATTGGAGAATATGAAGAAACCATAGGCATATGTCTTACACTGAAGTCATGTTCTCTAATGTAGAGGAAGTCCTTGTGGTTGAAGAAGCTCAGCCATCTGAAACAAATCTTTGCTCAAGAGAAGTTGAACCAAAACAAGCTACCAAAAAGGAGTTGAAGCCCATTGTCTGTGTACATAAGATCCTTAAATTTAACTTACTTGATTCTGTTGTTCCAAAGCTCAATATCCTAGTGCATTAAAGGGACTACTGTTTTCATATTTGTATATATTGAGCTGTAAGTTTATGTATATGTAGATGCAATGGGACAGATAAGCTAAACATTTAGATGAGTTGTCGGTAGTCATCCAAGTAACGAACAAATGTAGGGAATCATGAAGTTTGTAAAACGAAACAACCTTGAATGTTTGGTTTGCATTGTGAATTATCCATGTCTCTTTCTCCTTTCTAGATTTATTGATTTTCTTTTTTATTCCAATTTTAATATTACATTCTAGATGACAAAAATCATTAGAACAATGTTGTGTTGATGAAGTTGTTGAAATGGATGGATTAAGAATTGAGGGACCATGGTCAGACAAGAAAACATAGCCAATCGATTACAAATACTTCAAAAAAAATATAACTTTTGATAATTTGCTTTTTTATGTTTAATATTGAACATATATTTGTTTGATGTTTAATTGAATTAGATGTGAGTCGACATATGTTTAACGTAAGACATTATTAAGAAAACAATAAACAAGAAACAGTTATTAAACATACGTTTCTATTTCTGTTTCTTTTTTTCAAGAAACAAAAACAATTATCAAACACAGGACAAAAACAACAATTATCAAATACATCCCTGTTTCTTAAGAGGGAACAAGAAACGGGAACATGTAACATAAATGTTGTCAAACGAGTCCTTAAGTACCACATTGGTCATGCTATTCTAATCAATGATGGACAAAGTCATTTCATACTACCTTGGTTCGTAATAGAATGATTAAGCTTGACCTCGAGTAAAACTGTAAACACTGTGTGGAGATTTATGCTGACTATGATATTAAGATACTCTTTAGTTAGAGCTTTTGGCTCATTTTGTTAACCATAATAAATGTCTTTTAGTTAGAATCTTCTTGTTCTTATTTAATAATTTGCTTCCCTTTTACCCTCCAAAACTATTGCAGGTGGAGCTTTATGCTGATGATGATACAAAGATGCAGCTTCCTTTTCTTCGTAGTAAACATTATACAGTTGAGAAGGTTCAAATGTTCGAATTACCTATTGCTGTTTCTAGTGGTTATGATGTATATGACTTTGTGAACATAATCGCAATGCATATGATATTGACATTAATAAAAATCTTTTGAGGGAGCAAGTTTTTATTCTTGGAAGAATGGGAAATGCAAAACACTGCCCTTGTTGATAAATTAGGAGATATAGAAGAGGTACTTGCATTATCTTTTGACTGAAGGCAGTTTGGCTTCCAGATAGCACGCAAATTTGCATTTGAGTTCTCTTTTCGCTTTTGAGTTGTGGTTATGAACTAGTTATAAAATCTTGTTGTCATCATGGACAGGCAGTAGAGTTTGTTAGCATGCAACATGATGATGAGCTCTGGGAAGAACTGATAAGGCTGTCTTCACAAGGCTGA
mRNA sequence
ATGATATGGTTAAATCACGATTCACGACCTTCCCCTCAACGTAACTTTCGTGTCAAAGTTGTGCAAGATACCGAAGAGGAAGTCCTTGTGGTTGAAGAAGCTCAGCCATCTGAAACAAATCTTTGCTCAAGAGAAGTTGAACCAAAACAAGCTACCAAAAAGGAGTTGAAGCCCATTGTGGAGCTTTATGCTGATGATGATACAAAGATGCAGCTTCCTTTTCTTCGTAGTAAACATTATACAGTTGAGAAGGTTCAAATGTTCGAATTACCTATTGCTGTTTCTAGTGGTTATGATGCAGTAGAGTTTGTTAGCATGCAACATGATGATGAGCTCTGGGAAGAACTGATAAGGCTGTCTTCACAAGGCTGA
Coding sequence (CDS)
ATGATATGGTTAAATCACGATTCACGACCTTCCCCTCAACGTAACTTTCGTGTCAAAGTTGTGCAAGATACCGAAGAGGAAGTCCTTGTGGTTGAAGAAGCTCAGCCATCTGAAACAAATCTTTGCTCAAGAGAAGTTGAACCAAAACAAGCTACCAAAAAGGAGTTGAAGCCCATTGTGGAGCTTTATGCTGATGATGATACAAAGATGCAGCTTCCTTTTCTTCGTAGTAAACATTATACAGTTGAGAAGGTTCAAATGTTCGAATTACCTATTGCTGTTTCTAGTGGTTATGATGCAGTAGAGTTTGTTAGCATGCAACATGATGATGAGCTCTGGGAAGAACTGATAAGGCTGTCTTCACAAGGCTGA
Protein sequence
MIWLNHDSRPSPQRNFRVKVVQDTEEEVLVVEEAQPSETNLCSREVEPKQATKKELKPIVELYADDDTKMQLPFLRSKHYTVEKVQMFELPIAVSSGYDAVEFVSMQHDDELWEELIRLSSQG*
Homology
BLAST of Chy12G213410 vs. ExPASy Swiss-Prot
Match:
P93043 (Vacuolar protein sorting-associated protein 41 homolog OS=Arabidopsis thaliana OX=3702 GN=VPS41 PE=1 SV=3)
HSP 1 Score: 58.9 bits (141), Expect = 4.6e-08
Identity = 41/85 (48.24%), Postives = 49/85 (57.65%), Query Frame = 0
Query: 60 VELYADDDTKMQLPFLR-SKHYTVEKV------------QMFEL--------PIAV---- 119
VELYA+ DTKM LPFLR S+HY +EK Q+F L +AV
Sbjct: 674 VELYAEYDTKMLLPFLRSSQHYKLEKAYELCVKKDFLREQVFVLGRMGNAKQALAVIINK 733
BLAST of Chy12G213410 vs. ExPASy Swiss-Prot
Match:
P93231 (Vacuolar protein sorting-associated protein 41 homolog OS=Solanum lycopersicum OX=4081 GN=VPS41 PE=2 SV=1)
HSP 1 Score: 55.5 bits (132), Expect = 5.1e-07
Identity = 41/87 (47.13%), Postives = 48/87 (55.17%), Query Frame = 0
Query: 60 VELYADDDTKMQLPFLR-SKHYTVEKV------------QMFEL--------PIAV---- 119
VELYAD D KM L FLR S+HYT+EK Q+F L +AV
Sbjct: 659 VELYADYDPKMLLTFLRSSQHYTLEKAYEICVKKDLLKEQVFILGRMGNAKQALAVIINR 718
Query: 120 -SSGYDAVEFVSMQHDDELWEELIRLS 121
+A+EFVSMQ DDELWEELI+ S
Sbjct: 719 LGDIEEAIEFVSMQQDDELWEELIQQS 745
BLAST of Chy12G213410 vs. ExPASy TrEMBL
Match:
A0A0A0LY23 (Vacuolar protein sorting-associated protein 41 homolog OS=Cucumis sativus OX=3659 GN=Csa_1G144290 PE=3 SV=1)
HSP 1 Score: 65.5 bits (158), Expect = 1.8e-07
Identity = 45/86 (52.33%), Postives = 51/86 (59.30%), Query Frame = 0
Query: 60 VELYADDDTKMQLPFLR-SKHYTVEKV------------QMFEL--------PIAV---- 119
VELYAD DTKM LPFLR S+HYT+EK Q+F L +AV
Sbjct: 663 VELYADYDTKMLLPFLRSSQHYTLEKAYDICIKKNLLREQVFILGRMGNAKQALAVIIDK 722
BLAST of Chy12G213410 vs. ExPASy TrEMBL
Match:
A0A218WML3 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr026823 PE=4 SV=1)
HSP 1 Score: 64.7 bits (156), Expect = 3.1e-07
Identity = 38/63 (60.32%), Postives = 43/63 (68.25%), Query Frame = 0
Query: 60 VELYADDDTKMQLPFLR-SKHYTVEKVQMFELPIAVSSGY---DAVEFVSMQHDDELWEE 119
VELYAD D KM LPFLR S+HYT+EK I V AVEFV+MQHDD+LWEE
Sbjct: 668 VELYADCDPKMLLPFLRSSQHYTLEKA----YDICVKRDLVKEQAVEFVTMQHDDDLWEE 726
BLAST of Chy12G213410 vs. ExPASy TrEMBL
Match:
A0A5D3BNM7 (Vacuolar protein sorting-associated protein 41 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1371G00280 PE=3 SV=1)
HSP 1 Score: 64.3 bits (155), Expect = 4.1e-07
Identity = 44/86 (51.16%), Postives = 51/86 (59.30%), Query Frame = 0
Query: 60 VELYADDDTKMQLPFLR-SKHYTVEKV------------QMFEL--------PIAV---- 119
VELYAD DTKM LPFLR S+HYT+EK Q+F L +AV
Sbjct: 494 VELYADYDTKMLLPFLRSSQHYTLEKAYDICIKKNLLREQVFILGRMGNAKQALAVIIDK 553
BLAST of Chy12G213410 vs. ExPASy TrEMBL
Match:
A0A5A7U9Q0 (Vacuolar protein sorting-associated protein 41-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold578G00440 PE=4 SV=1)
HSP 1 Score: 64.3 bits (155), Expect = 4.1e-07
Identity = 44/86 (51.16%), Postives = 51/86 (59.30%), Query Frame = 0
Query: 60 VELYADDDTKMQLPFLR-SKHYTVEKV------------QMFEL--------PIAV---- 119
VELYAD DTKM LPFLR S+HYT+EK Q+F L +AV
Sbjct: 833 VELYADYDTKMLLPFLRSSQHYTLEKAYDICIKKNLLREQVFILGRMGNAKQALAVIIDK 892
BLAST of Chy12G213410 vs. ExPASy TrEMBL
Match:
A0A1S3CGC3 (Vacuolar protein sorting-associated protein 41 homolog OS=Cucumis melo OX=3656 GN=LOC103500583 PE=3 SV=1)
HSP 1 Score: 64.3 bits (155), Expect = 4.1e-07
Identity = 44/86 (51.16%), Postives = 51/86 (59.30%), Query Frame = 0
Query: 60 VELYADDDTKMQLPFLR-SKHYTVEKV------------QMFEL--------PIAV---- 119
VELYAD DTKM LPFLR S+HYT+EK Q+F L +AV
Sbjct: 663 VELYADYDTKMLLPFLRSSQHYTLEKAYDICIKKNLLREQVFILGRMGNAKQALAVIIDK 722
BLAST of Chy12G213410 vs. NCBI nr
Match:
GFQ01023.1 (vacuolar protein sorting-associated protein 41 homolog [Phtheirospermum japonicum])
HSP 1 Score: 66.2 bits (160), Expect = 1.11e-09
Identity = 37/60 (61.67%), Postives = 41/60 (68.33%), Query Frame = 0
Query: 60 VELYADDDTKMQLPFLRS-KHYTVEKVQMFELPIAVSSGYDAVEFVSMQHDDELWEELIR 118
VELYAD D KM LPFLRS +HYT+EK A+EFVSMQHDDELWEELI+
Sbjct: 718 VELYADYDPKMLLPFLRSSQHYTLEK---------------AIEFVSMQHDDELWEELIK 762
BLAST of Chy12G213410 vs. NCBI nr
Match:
XP_038894313.1 (vacuolar protein sorting-associated protein 41 homolog isoform X2 [Benincasa hispida])
HSP 1 Score: 65.5 bits (158), Expect = 2.01e-09
Identity = 44/86 (51.16%), Postives = 50/86 (58.14%), Query Frame = 0
Query: 60 VELYADDDTKMQLPFLRS-KHYTVEKV------------QMF----------ELPIAVSS 119
VELYAD DTKM LPFLRS +HYT+EK Q+F L + +
Sbjct: 497 VELYADYDTKMLLPFLRSSQHYTLEKAYEICIKKNLLREQVFILGRMGNAKQALAVIIDK 556
BLAST of Chy12G213410 vs. NCBI nr
Match:
XP_038894312.1 (vacuolar protein sorting-associated protein 41 homolog isoform X1 [Benincasa hispida])
HSP 1 Score: 65.5 bits (158), Expect = 2.04e-09
Identity = 44/86 (51.16%), Postives = 50/86 (58.14%), Query Frame = 0
Query: 60 VELYADDDTKMQLPFLRS-KHYTVEKV------------QMF----------ELPIAVSS 119
VELYAD DTKM LPFLRS +HYT+EK Q+F L + +
Sbjct: 663 VELYADYDTKMLLPFLRSSQHYTLEKAYEICIKKNLLREQVFILGRMGNAKQALAVIIDK 722
BLAST of Chy12G213410 vs. NCBI nr
Match:
XP_004139459.1 (vacuolar protein sorting-associated protein 41 homolog [Cucumis sativus] >KGN64876.1 hypothetical protein Csa_022695 [Cucumis sativus])
HSP 1 Score: 65.5 bits (158), Expect = 2.04e-09
Identity = 44/86 (51.16%), Postives = 50/86 (58.14%), Query Frame = 0
Query: 60 VELYADDDTKMQLPFLRS-KHYTVEKV------------QMF----------ELPIAVSS 119
VELYAD DTKM LPFLRS +HYT+EK Q+F L + +
Sbjct: 663 VELYADYDTKMLLPFLRSSQHYTLEKAYDICIKKNLLREQVFILGRMGNAKQALAVIIDK 722
BLAST of Chy12G213410 vs. NCBI nr
Match:
OWM73719.1 (hypothetical protein CDL15_Pgr026823 [Punica granatum])
HSP 1 Score: 64.7 bits (156), Expect = 3.85e-09
Identity = 38/63 (60.32%), Postives = 43/63 (68.25%), Query Frame = 0
Query: 60 VELYADDDTKMQLPFLRS-KHYTVEKVQMFELPIAVSSGY---DAVEFVSMQHDDELWEE 118
VELYAD D KM LPFLRS +HYT+EK I V AVEFV+MQHDD+LWEE
Sbjct: 668 VELYADCDPKMLLPFLRSSQHYTLEKAY----DICVKRDLVKEQAVEFVTMQHDDDLWEE 726
BLAST of Chy12G213410 vs. TAIR 10
Match:
AT1G08190.1 (vacuolar protein sorting 41 )
HSP 1 Score: 58.9 bits (141), Expect = 3.3e-09
Identity = 41/85 (48.24%), Postives = 49/85 (57.65%), Query Frame = 0
Query: 60 VELYADDDTKMQLPFLR-SKHYTVEKV------------QMFEL--------PIAV---- 119
VELYA+ DTKM LPFLR S+HY +EK Q+F L +AV
Sbjct: 674 VELYAEYDTKMLLPFLRSSQHYKLEKAYELCVKKDFLREQVFVLGRMGNAKQALAVIINK 733
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| P93043 | 4.6e-08 | 48.24 | Vacuolar protein sorting-associated protein 41 homolog OS=Arabidopsis thaliana O... | [more] |
| P93231 | 5.1e-07 | 47.13 | Vacuolar protein sorting-associated protein 41 homolog OS=Solanum lycopersicum O... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LY23 | 1.8e-07 | 52.33 | Vacuolar protein sorting-associated protein 41 homolog OS=Cucumis sativus OX=365... | [more] |
| A0A218WML3 | 3.1e-07 | 60.32 | Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr026823 PE=4 SV=1 | [more] |
| A0A5D3BNM7 | 4.1e-07 | 51.16 | Vacuolar protein sorting-associated protein 41 homolog OS=Cucumis melo var. maku... | [more] |
| A0A5A7U9Q0 | 4.1e-07 | 51.16 | Vacuolar protein sorting-associated protein 41-like protein OS=Cucumis melo var.... | [more] |
| A0A1S3CGC3 | 4.1e-07 | 51.16 | Vacuolar protein sorting-associated protein 41 homolog OS=Cucumis melo OX=3656 G... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| GFQ01023.1 | 1.11e-09 | 61.67 | vacuolar protein sorting-associated protein 41 homolog [Phtheirospermum japonicu... | [more] |
| XP_038894313.1 | 2.01e-09 | 51.16 | vacuolar protein sorting-associated protein 41 homolog isoform X2 [Benincasa his... | [more] |
| XP_038894312.1 | 2.04e-09 | 51.16 | vacuolar protein sorting-associated protein 41 homolog isoform X1 [Benincasa his... | [more] |
| XP_004139459.1 | 2.04e-09 | 51.16 | vacuolar protein sorting-associated protein 41 homolog [Cucumis sativus] >KGN648... | [more] |
| OWM73719.1 | 3.85e-09 | 60.32 | hypothetical protein CDL15_Pgr026823 [Punica granatum] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT1G08190.1 | 3.3e-09 | 48.24 | vacuolar protein sorting 41 | [more] |
