Chy12G213410.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy12G213410.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	vacuolar protein sorting 41
Location	chrH12: 11342662 .. 11345337 (-)
Sequence length	372
RNA-Seq Expression	Chy12G213410.1
Synteny	Chy12G213410.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATATGGTTAAATCACGATTCACGACCTTCCCCTCAACGTAACTTTCGTGTCAAAGTTGTGCAAGATACCGAAGGTCCTAGTAGGTTAGTTTATATCATTAGACTCGTGCCTGAGCTCTCAAGAAATTACTTTCGAAGTCCTTCAAGGAGGGTCCTTTTTGGATGAATCTCATTGTTGGGTGGCTTTTATGTGGCACAAAATATCTCATTGTCATTTGGAGCTTTTGGAGTAAATGATGTTTTTGCTACTGTGGTATGCATTCTCCTTACCGATGTTACTCGATTTTATTACAATCGACCAAAGGTAACTTTCCCCATTGCTCTACTGAACAACTTCAAAATGGGATTCACTTGTGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAACAGCACTTGAAGAAACCATTCTGGTGGTAGCTATAGCATTTACATTTGTAAAGTTCTTTGAGCAATAATTTTGGTCTTACTCTATATCTTTACAGCTTGTTCTAATTCTTTTCGTTGAAATTTTTTCCATTTTCCCCTTTGTTTCTTCTGTATATTTTCAACATACGGTTTTCATTGGAGAATTAAATGTTCTATACACCCTCAAATCAAATATAGTAACAAATTTGAATGTAATTGATGAGTTTTAAGAGTTTAATTCTTGTTTGTGTATTGAAATGCATCCCTTGCAATGGAGAATTGTTTGGAAACCATGAATCCAGTGTTAACTATCAGCGACAAATTTAAGATGGTAAGTTGTTAATAAGATACAAGCTTTCACCTAGTGTACTTCAACAGAACCATAACGTGTAGTCTCTTGGCATTATTGTGTTTACTATTGTTGTTAAGAGTATCTCTTATCTTTTGGTTTGATTCATAGATAAGCTTCAGATGTATTGAAATTTATGCTGATACATAATTTAAATGATATTGATCTTACCTTCGTATCTTTTGGTTTGATTCAAGGCTTTTGTAGTCTATATTTTGTGAATAACTGGCATTTCTTTCAAACTTTCATATAAATATTTGTTTTAAATCTCTTTTGTAGATTGGAGAATATGAAGAAACCATAGGCATATGTCTTACACTGAAGTCATGTTCTCTAATGTAGAGGAAGTCCTTGTGGTTGAAGAAGCTCAGCCATCTGAAACAAATCTTTGCTCAAGAGAAGTTGAACCAAAACAAGCTACCAAAAAGGAGTTGAAGCCCATTGTCTGTGTACATAAGATCCTTAAATTTAACTTACTTGATTCTGTTGTTCCAAAGCTCAATATCCTAGTGCATTAAAGGGACTACTGTTTTCATATTTGTATATATTGAGCTGTAAGTTTATGTATATGTAGATGCAATGGGACAGATAAGCTAAACATTTAGATGAGTTGTCGGTAGTCATCCAAGTAACGAACAAATGTAGGGAATCATGAAGTTTGTAAAACGAAACAACCTTGAATGTTTGGTTTGCATTGTGAATTATCCATGTCTCTTTCTCCTTTCTAGATTTATTGATTTTCTTTTTTATTCCAATTTTAATATTACATTCTAGATGACAAAAATCATTAGAACAATGTTGTGTTGATGAAGTTGTTGAAATGGATGGATTAAGAATTGAGGGACCATGGTCAGACAAGAAAACATAGCCAATCGATTACAAATACTTCAAAAAAAATATAACTTTTGATAATTTGCTTTTTTATGTTTAATATTGAACATATATTTGTTTGATGTTTAATTGAATTAGATGTGAGTCGACATATGTTTAACGTAAGACATTATTAAGAAAACAATAAACAAGAAACAGTTATTAAACATACGTTTCTATTTCTGTTTCTTTTTTTCAAGAAACAAAAACAATTATCAAACACAGGACAAAAACAACAATTATCAAATACATCCCTGTTTCTTAAGAGGGAACAAGAAACGGGAACATGTAACATAAATGTTGTCAAACGAGTCCTTAAGTACCACATTGGTCATGCTATTCTAATCAATGATGGACAAAGTCATTTCATACTACCTTGGTTCGTAATAGAATGATTAAGCTTGACCTCGAGTAAAACTGTAAACACTGTGTGGAGATTTATGCTGACTATGATATTAAGATACTCTTTAGTTAGAGCTTTTGGCTCATTTTGTTAACCATAATAAATGTCTTTTAGTTAGAATCTTCTTGTTCTTATTTAATAATTTGCTTCCCTTTTACCCTCCAAAACTATTGCAGGTGGAGCTTTATGCTGATGATGATACAAAGATGCAGCTTCCTTTTCTTCGTAGTAAACATTATACAGTTGAGAAGGTTCAAATGTTCGAATTACCTATTGCTGTTTCTAGTGGTTATGATGTATATGACTTTGTGAACATAATCGCAATGCATATGATATTGACATTAATAAAAATCTTTTGAGGGAGCAAGTTTTTATTCTTGGAAGAATGGGAAATGCAAAACACTGCCCTTGTTGATAAATTAGGAGATATAGAAGAGGTACTTGCATTATCTTTTGACTGAAGGCAGTTTGGCTTCCAGATAGCACGCAAATTTGCATTTGAGTTCTCTTTTCGCTTTTGAGTTGTGGTTATGAACTAGTTATAAAATCTTGTTGTCATCATGGACAGGCAGTAGAGTTTGTTAGCATGCAACATGATGATGAGCTCTGGGAAGAACTGATAAGGCTGTCTTCACAAGGCTGA

mRNA sequence

ATGATATGGTTAAATCACGATTCACGACCTTCCCCTCAACGTAACTTTCGTGTCAAAGTTGTGCAAGATACCGAAGAGGAAGTCCTTGTGGTTGAAGAAGCTCAGCCATCTGAAACAAATCTTTGCTCAAGAGAAGTTGAACCAAAACAAGCTACCAAAAAGGAGTTGAAGCCCATTGTGGAGCTTTATGCTGATGATGATACAAAGATGCAGCTTCCTTTTCTTCGTAGTAAACATTATACAGTTGAGAAGGTTCAAATGTTCGAATTACCTATTGCTGTTTCTAGTGGTTATGATGCAGTAGAGTTTGTTAGCATGCAACATGATGATGAGCTCTGGGAAGAACTGATAAGGCTGTCTTCACAAGGCTGA

Coding sequence (CDS)

ATGATATGGTTAAATCACGATTCACGACCTTCCCCTCAACGTAACTTTCGTGTCAAAGTTGTGCAAGATACCGAAGAGGAAGTCCTTGTGGTTGAAGAAGCTCAGCCATCTGAAACAAATCTTTGCTCAAGAGAAGTTGAACCAAAACAAGCTACCAAAAAGGAGTTGAAGCCCATTGTGGAGCTTTATGCTGATGATGATACAAAGATGCAGCTTCCTTTTCTTCGTAGTAAACATTATACAGTTGAGAAGGTTCAAATGTTCGAATTACCTATTGCTGTTTCTAGTGGTTATGATGCAGTAGAGTTTGTTAGCATGCAACATGATGATGAGCTCTGGGAAGAACTGATAAGGCTGTCTTCACAAGGCTGA

Protein sequence

MIWLNHDSRPSPQRNFRVKVVQDTEEEVLVVEEAQPSETNLCSREVEPKQATKKELKPIVELYADDDTKMQLPFLRSKHYTVEKVQMFELPIAVSSGYDAVEFVSMQHDDELWEELIRLSSQG*

Homology

[Close]

BLAST of Chy12G213410.1 vs. ExPASy Swiss-Prot
Match: P93043 (Vacuolar protein sorting-associated protein 41 homolog OS=Arabidopsis thaliana OX=3702 GN=VPS41 PE=1 SV=3)

HSP 1 Score: 58.9 bits (141), Expect = 4.6e-08
Identity = 41/85 (48.24%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 60  VELYADDDTKMQLPFLR-SKHYTVEKV------------QMFEL--------PIAV---- 119
           VELYA+ DTKM LPFLR S+HY +EK             Q+F L         +AV    
Sbjct: 674 VELYAEYDTKMLLPFLRSSQHYKLEKAYELCVKKDFLREQVFVLGRMGNAKQALAVIINK 733

[Close]

BLAST of Chy12G213410.1 vs. ExPASy Swiss-Prot
Match: P93231 (Vacuolar protein sorting-associated protein 41 homolog OS=Solanum lycopersicum OX=4081 GN=VPS41 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.1e-07
Identity = 41/87 (47.13%), Postives = 48/87 (55.17%), Query Frame = 0


Query: 60  VELYADDDTKMQLPFLR-SKHYTVEKV------------QMFEL--------PIAV---- 119
           VELYAD D KM L FLR S+HYT+EK             Q+F L         +AV    
Sbjct: 659 VELYADYDPKMLLTFLRSSQHYTLEKAYEICVKKDLLKEQVFILGRMGNAKQALAVIINR 718

Query: 120 -SSGYDAVEFVSMQHDDELWEELIRLS 121
                +A+EFVSMQ DDELWEELI+ S
Sbjct: 719 LGDIEEAIEFVSMQQDDELWEELIQQS 745

[Close]

BLAST of Chy12G213410.1 vs. ExPASy TrEMBL
Match: A0A0A0LY23 (Vacuolar protein sorting-associated protein 41 homolog OS=Cucumis sativus OX=3659 GN=Csa_1G144290 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.8e-07
Identity = 45/86 (52.33%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 60  VELYADDDTKMQLPFLR-SKHYTVEKV------------QMFEL--------PIAV---- 119
           VELYAD DTKM LPFLR S+HYT+EK             Q+F L         +AV    
Sbjct: 663 VELYADYDTKMLLPFLRSSQHYTLEKAYDICIKKNLLREQVFILGRMGNAKQALAVIIDK 722

[Close]

BLAST of Chy12G213410.1 vs. ExPASy TrEMBL
Match: A0A218WML3 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr026823 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.1e-07
Identity = 38/63 (60.32%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 60  VELYADDDTKMQLPFLR-SKHYTVEKVQMFELPIAVSSGY---DAVEFVSMQHDDELWEE 119
           VELYAD D KM LPFLR S+HYT+EK       I V        AVEFV+MQHDD+LWEE
Sbjct: 668 VELYADCDPKMLLPFLRSSQHYTLEKA----YDICVKRDLVKEQAVEFVTMQHDDDLWEE 726

[Close]

BLAST of Chy12G213410.1 vs. ExPASy TrEMBL
Match: A0A5D3BNM7 (Vacuolar protein sorting-associated protein 41 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1371G00280 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.1e-07
Identity = 44/86 (51.16%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 60  VELYADDDTKMQLPFLR-SKHYTVEKV------------QMFEL--------PIAV---- 119
           VELYAD DTKM LPFLR S+HYT+EK             Q+F L         +AV    
Sbjct: 494 VELYADYDTKMLLPFLRSSQHYTLEKAYDICIKKNLLREQVFILGRMGNAKQALAVIIDK 553

[Close]

BLAST of Chy12G213410.1 vs. ExPASy TrEMBL
Match: A0A5A7U9Q0 (Vacuolar protein sorting-associated protein 41-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold578G00440 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.1e-07
Identity = 44/86 (51.16%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 60  VELYADDDTKMQLPFLR-SKHYTVEKV------------QMFEL--------PIAV---- 119
           VELYAD DTKM LPFLR S+HYT+EK             Q+F L         +AV    
Sbjct: 833 VELYADYDTKMLLPFLRSSQHYTLEKAYDICIKKNLLREQVFILGRMGNAKQALAVIIDK 892

[Close]

BLAST of Chy12G213410.1 vs. ExPASy TrEMBL
Match: A0A1S3CGC3 (Vacuolar protein sorting-associated protein 41 homolog OS=Cucumis melo OX=3656 GN=LOC103500583 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.1e-07
Identity = 44/86 (51.16%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 60  VELYADDDTKMQLPFLR-SKHYTVEKV------------QMFEL--------PIAV---- 119
           VELYAD DTKM LPFLR S+HYT+EK             Q+F L         +AV    
Sbjct: 663 VELYADYDTKMLLPFLRSSQHYTLEKAYDICIKKNLLREQVFILGRMGNAKQALAVIIDK 722

[Close]

BLAST of Chy12G213410.1 vs. NCBI nr
Match: GFQ01023.1 (vacuolar protein sorting-associated protein 41 homolog [Phtheirospermum japonicum])

HSP 1 Score: 66.2 bits (160), Expect = 1.11e-09
Identity = 37/60 (61.67%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 60  VELYADDDTKMQLPFLRS-KHYTVEKVQMFELPIAVSSGYDAVEFVSMQHDDELWEELIR 118
           VELYAD D KM LPFLRS +HYT+EK               A+EFVSMQHDDELWEELI+
Sbjct: 718 VELYADYDPKMLLPFLRSSQHYTLEK---------------AIEFVSMQHDDELWEELIK 762

[Close]

BLAST of Chy12G213410.1 vs. NCBI nr
Match: XP_038894313.1 (vacuolar protein sorting-associated protein 41 homolog isoform X2 [Benincasa hispida])

HSP 1 Score: 65.5 bits (158), Expect = 2.01e-09
Identity = 44/86 (51.16%), Postives = 50/86 (58.14%), Query Frame = 0


Query: 60  VELYADDDTKMQLPFLRS-KHYTVEKV------------QMF----------ELPIAVSS 119
           VELYAD DTKM LPFLRS +HYT+EK             Q+F           L + +  
Sbjct: 497 VELYADYDTKMLLPFLRSSQHYTLEKAYEICIKKNLLREQVFILGRMGNAKQALAVIIDK 556

[Close]

BLAST of Chy12G213410.1 vs. NCBI nr
Match: XP_038894312.1 (vacuolar protein sorting-associated protein 41 homolog isoform X1 [Benincasa hispida])

HSP 1 Score: 65.5 bits (158), Expect = 2.04e-09
Identity = 44/86 (51.16%), Postives = 50/86 (58.14%), Query Frame = 0


Query: 60  VELYADDDTKMQLPFLRS-KHYTVEKV------------QMF----------ELPIAVSS 119
           VELYAD DTKM LPFLRS +HYT+EK             Q+F           L + +  
Sbjct: 663 VELYADYDTKMLLPFLRSSQHYTLEKAYEICIKKNLLREQVFILGRMGNAKQALAVIIDK 722

[Close]

BLAST of Chy12G213410.1 vs. NCBI nr
Match: XP_004139459.1 (vacuolar protein sorting-associated protein 41 homolog [Cucumis sativus] >KGN64876.1 hypothetical protein Csa_022695 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 2.04e-09
Identity = 44/86 (51.16%), Postives = 50/86 (58.14%), Query Frame = 0


Query: 60  VELYADDDTKMQLPFLRS-KHYTVEKV------------QMF----------ELPIAVSS 119
           VELYAD DTKM LPFLRS +HYT+EK             Q+F           L + +  
Sbjct: 663 VELYADYDTKMLLPFLRSSQHYTLEKAYDICIKKNLLREQVFILGRMGNAKQALAVIIDK 722

[Close]

BLAST of Chy12G213410.1 vs. NCBI nr
Match: OWM73719.1 (hypothetical protein CDL15_Pgr026823 [Punica granatum])

HSP 1 Score: 64.7 bits (156), Expect = 3.85e-09
Identity = 38/63 (60.32%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 60  VELYADDDTKMQLPFLRS-KHYTVEKVQMFELPIAVSSGY---DAVEFVSMQHDDELWEE 118
           VELYAD D KM LPFLRS +HYT+EK       I V        AVEFV+MQHDD+LWEE
Sbjct: 668 VELYADCDPKMLLPFLRSSQHYTLEKAY----DICVKRDLVKEQAVEFVTMQHDDDLWEE 726

[Close]

BLAST of Chy12G213410.1 vs. TAIR 10
Match: AT1G08190.1 (vacuolar protein sorting 41 )

HSP 1 Score: 58.9 bits (141), Expect = 3.3e-09
Identity = 41/85 (48.24%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 60  VELYADDDTKMQLPFLR-SKHYTVEKV------------QMFEL--------PIAV---- 119
           VELYA+ DTKM LPFLR S+HY +EK             Q+F L         +AV    
Sbjct: 674 VELYAEYDTKMLLPFLRSSQHYKLEKAYELCVKKDFLREQVFVLGRMGNAKQALAVIINK 733

The following BLAST results are available for this feature:

BLAST of Chy12G213410.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93043	4.6e-08	48.24	Vacuolar protein sorting-associated protein 41 homolog OS=Arabidopsis thaliana O...	[more]
P93231	5.1e-07	47.13	Vacuolar protein sorting-associated protein 41 homolog OS=Solanum lycopersicum O...	[more]

BLAST of Chy12G213410.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY23	1.8e-07	52.33	Vacuolar protein sorting-associated protein 41 homolog OS=Cucumis sativus OX=365...	[more]
A0A218WML3	3.1e-07	60.32	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr026823 PE=4 SV=1	[more]
A0A5D3BNM7	4.1e-07	51.16	Vacuolar protein sorting-associated protein 41 homolog OS=Cucumis melo var. maku...	[more]
A0A5A7U9Q0	4.1e-07	51.16	Vacuolar protein sorting-associated protein 41-like protein OS=Cucumis melo var....	[more]
A0A1S3CGC3	4.1e-07	51.16	Vacuolar protein sorting-associated protein 41 homolog OS=Cucumis melo OX=3656 G...	[more]

BLAST of Chy12G213410.1 vs. NCBI nr


Match Name	E-value	Identity	Description
GFQ01023.1	1.11e-09	61.67	vacuolar protein sorting-associated protein 41 homolog [Phtheirospermum japonicu...	[more]
XP_038894313.1	2.01e-09	51.16	vacuolar protein sorting-associated protein 41 homolog isoform X2 [Benincasa his...	[more]
XP_038894312.1	2.04e-09	51.16	vacuolar protein sorting-associated protein 41 homolog isoform X1 [Benincasa his...	[more]
XP_004139459.1	2.04e-09	51.16	vacuolar protein sorting-associated protein 41 homolog [Cucumis sativus] >KGN648...	[more]
OWM73719.1	3.85e-09	60.32	hypothetical protein CDL15_Pgr026823 [Punica granatum]	[more]

BLAST of Chy12G213410.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08190.1	3.3e-09	48.24	vacuolar protein sorting 41	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy12G213410	Chy12G213410	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy12G213410.1.exon4	Chy12G213410.1.exon4	exon
Chy12G213410.1.exon3	Chy12G213410.1.exon3	exon
Chy12G213410.1.exon2	Chy12G213410.1.exon2	exon
Chy12G213410.1.exon1	Chy12G213410.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy12G213410.1.cds4	Chy12G213410.1.cds4	CDS
Chy12G213410.1.cds3	Chy12G213410.1.cds3	CDS
Chy12G213410.1.cds2	Chy12G213410.1.cds2	CDS
Chy12G213410.1.cds1	Chy12G213410.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy12G213410.1	Chy12G213410.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046907	intracellular transport
biological_process	GO:0015031	protein transport
cellular_component	GO:0110165	cellular anatomical entity