Chy12G213410 (gene) Cucumber (hystrix) v1

Overview
NameChy12G213410
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptionvacuolar protein sorting 41
LocationchrH12: 11342662 .. 11345337 (-)
RNA-Seq ExpressionChy12G213410
SyntenyChy12G213410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATGGTTAAATCACGATTCACGACCTTCCCCTCAACGTAACTTTCGTGTCAAAGTTGTGCAAGATACCGAAGGTCCTAGTAGGTTAGTTTATATCATTAGACTCGTGCCTGAGCTCTCAAGAAATTACTTTCGAAGTCCTTCAAGGAGGGTCCTTTTTGGATGAATCTCATTGTTGGGTGGCTTTTATGTGGCACAAAATATCTCATTGTCATTTGGAGCTTTTGGAGTAAATGATGTTTTTGCTACTGTGGTATGCATTCTCCTTACCGATGTTACTCGATTTTATTACAATCGACCAAAGGTAACTTTCCCCATTGCTCTACTGAACAACTTCAAAATGGGATTCACTTGTGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAACAGCACTTGAAGAAACCATTCTGGTGGTAGCTATAGCATTTACATTTGTAAAGTTCTTTGAGCAATAATTTTGGTCTTACTCTATATCTTTACAGCTTGTTCTAATTCTTTTCGTTGAAATTTTTTCCATTTTCCCCTTTGTTTCTTCTGTATATTTTCAACATACGGTTTTCATTGGAGAATTAAATGTTCTATACACCCTCAAATCAAATATAGTAACAAATTTGAATGTAATTGATGAGTTTTAAGAGTTTAATTCTTGTTTGTGTATTGAAATGCATCCCTTGCAATGGAGAATTGTTTGGAAACCATGAATCCAGTGTTAACTATCAGCGACAAATTTAAGATGGTAAGTTGTTAATAAGATACAAGCTTTCACCTAGTGTACTTCAACAGAACCATAACGTGTAGTCTCTTGGCATTATTGTGTTTACTATTGTTGTTAAGAGTATCTCTTATCTTTTGGTTTGATTCATAGATAAGCTTCAGATGTATTGAAATTTATGCTGATACATAATTTAAATGATATTGATCTTACCTTCGTATCTTTTGGTTTGATTCAAGGCTTTTGTAGTCTATATTTTGTGAATAACTGGCATTTCTTTCAAACTTTCATATAAATATTTGTTTTAAATCTCTTTTGTAGATTGGAGAATATGAAGAAACCATAGGCATATGTCTTACACTGAAGTCATGTTCTCTAATGTAGAGGAAGTCCTTGTGGTTGAAGAAGCTCAGCCATCTGAAACAAATCTTTGCTCAAGAGAAGTTGAACCAAAACAAGCTACCAAAAAGGAGTTGAAGCCCATTGTCTGTGTACATAAGATCCTTAAATTTAACTTACTTGATTCTGTTGTTCCAAAGCTCAATATCCTAGTGCATTAAAGGGACTACTGTTTTCATATTTGTATATATTGAGCTGTAAGTTTATGTATATGTAGATGCAATGGGACAGATAAGCTAAACATTTAGATGAGTTGTCGGTAGTCATCCAAGTAACGAACAAATGTAGGGAATCATGAAGTTTGTAAAACGAAACAACCTTGAATGTTTGGTTTGCATTGTGAATTATCCATGTCTCTTTCTCCTTTCTAGATTTATTGATTTTCTTTTTTATTCCAATTTTAATATTACATTCTAGATGACAAAAATCATTAGAACAATGTTGTGTTGATGAAGTTGTTGAAATGGATGGATTAAGAATTGAGGGACCATGGTCAGACAAGAAAACATAGCCAATCGATTACAAATACTTCAAAAAAAATATAACTTTTGATAATTTGCTTTTTTATGTTTAATATTGAACATATATTTGTTTGATGTTTAATTGAATTAGATGTGAGTCGACATATGTTTAACGTAAGACATTATTAAGAAAACAATAAACAAGAAACAGTTATTAAACATACGTTTCTATTTCTGTTTCTTTTTTTCAAGAAACAAAAACAATTATCAAACACAGGACAAAAACAACAATTATCAAATACATCCCTGTTTCTTAAGAGGGAACAAGAAACGGGAACATGTAACATAAATGTTGTCAAACGAGTCCTTAAGTACCACATTGGTCATGCTATTCTAATCAATGATGGACAAAGTCATTTCATACTACCTTGGTTCGTAATAGAATGATTAAGCTTGACCTCGAGTAAAACTGTAAACACTGTGTGGAGATTTATGCTGACTATGATATTAAGATACTCTTTAGTTAGAGCTTTTGGCTCATTTTGTTAACCATAATAAATGTCTTTTAGTTAGAATCTTCTTGTTCTTATTTAATAATTTGCTTCCCTTTTACCCTCCAAAACTATTGCAGGTGGAGCTTTATGCTGATGATGATACAAAGATGCAGCTTCCTTTTCTTCGTAGTAAACATTATACAGTTGAGAAGGTTCAAATGTTCGAATTACCTATTGCTGTTTCTAGTGGTTATGATGTATATGACTTTGTGAACATAATCGCAATGCATATGATATTGACATTAATAAAAATCTTTTGAGGGAGCAAGTTTTTATTCTTGGAAGAATGGGAAATGCAAAACACTGCCCTTGTTGATAAATTAGGAGATATAGAAGAGGTACTTGCATTATCTTTTGACTGAAGGCAGTTTGGCTTCCAGATAGCACGCAAATTTGCATTTGAGTTCTCTTTTCGCTTTTGAGTTGTGGTTATGAACTAGTTATAAAATCTTGTTGTCATCATGGACAGGCAGTAGAGTTTGTTAGCATGCAACATGATGATGAGCTCTGGGAAGAACTGATAAGGCTGTCTTCACAAGGCTGA

mRNA sequence

ATGATATGGTTAAATCACGATTCACGACCTTCCCCTCAACGTAACTTTCGTGTCAAAGTTGTGCAAGATACCGAAGAGGAAGTCCTTGTGGTTGAAGAAGCTCAGCCATCTGAAACAAATCTTTGCTCAAGAGAAGTTGAACCAAAACAAGCTACCAAAAAGGAGTTGAAGCCCATTGTGGAGCTTTATGCTGATGATGATACAAAGATGCAGCTTCCTTTTCTTCGTAGTAAACATTATACAGTTGAGAAGGTTCAAATGTTCGAATTACCTATTGCTGTTTCTAGTGGTTATGATGCAGTAGAGTTTGTTAGCATGCAACATGATGATGAGCTCTGGGAAGAACTGATAAGGCTGTCTTCACAAGGCTGA

Coding sequence (CDS)

ATGATATGGTTAAATCACGATTCACGACCTTCCCCTCAACGTAACTTTCGTGTCAAAGTTGTGCAAGATACCGAAGAGGAAGTCCTTGTGGTTGAAGAAGCTCAGCCATCTGAAACAAATCTTTGCTCAAGAGAAGTTGAACCAAAACAAGCTACCAAAAAGGAGTTGAAGCCCATTGTGGAGCTTTATGCTGATGATGATACAAAGATGCAGCTTCCTTTTCTTCGTAGTAAACATTATACAGTTGAGAAGGTTCAAATGTTCGAATTACCTATTGCTGTTTCTAGTGGTTATGATGCAGTAGAGTTTGTTAGCATGCAACATGATGATGAGCTCTGGGAAGAACTGATAAGGCTGTCTTCACAAGGCTGA

Protein sequence

MIWLNHDSRPSPQRNFRVKVVQDTEEEVLVVEEAQPSETNLCSREVEPKQATKKELKPIVELYADDDTKMQLPFLRSKHYTVEKVQMFELPIAVSSGYDAVEFVSMQHDDELWEELIRLSSQG*
Homology
[Close]
BLAST of Chy12G213410 vs. ExPASy Swiss-Prot
Match: P93043 (Vacuolar protein sorting-associated protein 41 homolog OS=Arabidopsis thaliana OX=3702 GN=VPS41 PE=1 SV=3)

HSP 1 Score: 58.9 bits (141), Expect = 4.6e-08
Identity = 41/85 (48.24%), Postives = 49/85 (57.65%), Query Frame = 0 

Query: 60  VELYADDDTKMQLPFLR-SKHYTVEKV------------QMFEL--------PIAV---- 119
           VELYA+ DTKM LPFLR S+HY +EK             Q+F L         +AV    
Sbjct: 674 VELYAEYDTKMLLPFLRSSQHYKLEKAYELCVKKDFLREQVFVLGRMGNAKQALAVIINK 733

[Close]
BLAST of Chy12G213410 vs. ExPASy Swiss-Prot
Match: P93231 (Vacuolar protein sorting-associated protein 41 homolog OS=Solanum lycopersicum OX=4081 GN=VPS41 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.1e-07
Identity = 41/87 (47.13%), Postives = 48/87 (55.17%), Query Frame = 0 

Query: 60  VELYADDDTKMQLPFLR-SKHYTVEKV------------QMFEL--------PIAV---- 119
           VELYAD D KM L FLR S+HYT+EK             Q+F L         +AV    
Sbjct: 659 VELYADYDPKMLLTFLRSSQHYTLEKAYEICVKKDLLKEQVFILGRMGNAKQALAVIINR 718

Query: 120 -SSGYDAVEFVSMQHDDELWEELIRLS 121
                +A+EFVSMQ DDELWEELI+ S
Sbjct: 719 LGDIEEAIEFVSMQQDDELWEELIQQS 745

[Close]
BLAST of Chy12G213410 vs. ExPASy TrEMBL
Match: A0A0A0LY23 (Vacuolar protein sorting-associated protein 41 homolog OS=Cucumis sativus OX=3659 GN=Csa_1G144290 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.8e-07
Identity = 45/86 (52.33%), Postives = 51/86 (59.30%), Query Frame = 0 

Query: 60  VELYADDDTKMQLPFLR-SKHYTVEKV------------QMFEL--------PIAV---- 119
           VELYAD DTKM LPFLR S+HYT+EK             Q+F L         +AV    
Sbjct: 663 VELYADYDTKMLLPFLRSSQHYTLEKAYDICIKKNLLREQVFILGRMGNAKQALAVIIDK 722

[Close]
BLAST of Chy12G213410 vs. ExPASy TrEMBL
Match: A0A218WML3 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr026823 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.1e-07
Identity = 38/63 (60.32%), Postives = 43/63 (68.25%), Query Frame = 0 

Query: 60  VELYADDDTKMQLPFLR-SKHYTVEKVQMFELPIAVSSGY---DAVEFVSMQHDDELWEE 119
           VELYAD D KM LPFLR S+HYT+EK       I V        AVEFV+MQHDD+LWEE
Sbjct: 668 VELYADCDPKMLLPFLRSSQHYTLEKA----YDICVKRDLVKEQAVEFVTMQHDDDLWEE 726

[Close]
BLAST of Chy12G213410 vs. ExPASy TrEMBL
Match: A0A5D3BNM7 (Vacuolar protein sorting-associated protein 41 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1371G00280 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.1e-07
Identity = 44/86 (51.16%), Postives = 51/86 (59.30%), Query Frame = 0 

Query: 60  VELYADDDTKMQLPFLR-SKHYTVEKV------------QMFEL--------PIAV---- 119
           VELYAD DTKM LPFLR S+HYT+EK             Q+F L         +AV    
Sbjct: 494 VELYADYDTKMLLPFLRSSQHYTLEKAYDICIKKNLLREQVFILGRMGNAKQALAVIIDK 553

[Close]
BLAST of Chy12G213410 vs. ExPASy TrEMBL
Match: A0A5A7U9Q0 (Vacuolar protein sorting-associated protein 41-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold578G00440 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.1e-07
Identity = 44/86 (51.16%), Postives = 51/86 (59.30%), Query Frame = 0 

Query: 60  VELYADDDTKMQLPFLR-SKHYTVEKV------------QMFEL--------PIAV---- 119
           VELYAD DTKM LPFLR S+HYT+EK             Q+F L         +AV    
Sbjct: 833 VELYADYDTKMLLPFLRSSQHYTLEKAYDICIKKNLLREQVFILGRMGNAKQALAVIIDK 892

[Close]
BLAST of Chy12G213410 vs. ExPASy TrEMBL
Match: A0A1S3CGC3 (Vacuolar protein sorting-associated protein 41 homolog OS=Cucumis melo OX=3656 GN=LOC103500583 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.1e-07
Identity = 44/86 (51.16%), Postives = 51/86 (59.30%), Query Frame = 0 

Query: 60  VELYADDDTKMQLPFLR-SKHYTVEKV------------QMFEL--------PIAV---- 119
           VELYAD DTKM LPFLR S+HYT+EK             Q+F L         +AV    
Sbjct: 663 VELYADYDTKMLLPFLRSSQHYTLEKAYDICIKKNLLREQVFILGRMGNAKQALAVIIDK 722

[Close]
BLAST of Chy12G213410 vs. NCBI nr
Match: GFQ01023.1 (vacuolar protein sorting-associated protein 41 homolog [Phtheirospermum japonicum])

HSP 1 Score: 66.2 bits (160), Expect = 1.11e-09
Identity = 37/60 (61.67%), Postives = 41/60 (68.33%), Query Frame = 0 

Query: 60  VELYADDDTKMQLPFLRS-KHYTVEKVQMFELPIAVSSGYDAVEFVSMQHDDELWEELIR 118
           VELYAD D KM LPFLRS +HYT+EK               A+EFVSMQHDDELWEELI+
Sbjct: 718 VELYADYDPKMLLPFLRSSQHYTLEK---------------AIEFVSMQHDDELWEELIK 762

[Close]
BLAST of Chy12G213410 vs. NCBI nr
Match: XP_038894313.1 (vacuolar protein sorting-associated protein 41 homolog isoform X2 [Benincasa hispida])

HSP 1 Score: 65.5 bits (158), Expect = 2.01e-09
Identity = 44/86 (51.16%), Postives = 50/86 (58.14%), Query Frame = 0 

Query: 60  VELYADDDTKMQLPFLRS-KHYTVEKV------------QMF----------ELPIAVSS 119
           VELYAD DTKM LPFLRS +HYT+EK             Q+F           L + +  
Sbjct: 497 VELYADYDTKMLLPFLRSSQHYTLEKAYEICIKKNLLREQVFILGRMGNAKQALAVIIDK 556

[Close]
BLAST of Chy12G213410 vs. NCBI nr
Match: XP_038894312.1 (vacuolar protein sorting-associated protein 41 homolog isoform X1 [Benincasa hispida])

HSP 1 Score: 65.5 bits (158), Expect = 2.04e-09
Identity = 44/86 (51.16%), Postives = 50/86 (58.14%), Query Frame = 0 

Query: 60  VELYADDDTKMQLPFLRS-KHYTVEKV------------QMF----------ELPIAVSS 119
           VELYAD DTKM LPFLRS +HYT+EK             Q+F           L + +  
Sbjct: 663 VELYADYDTKMLLPFLRSSQHYTLEKAYEICIKKNLLREQVFILGRMGNAKQALAVIIDK 722

[Close]
BLAST of Chy12G213410 vs. NCBI nr
Match: XP_004139459.1 (vacuolar protein sorting-associated protein 41 homolog [Cucumis sativus] >KGN64876.1 hypothetical protein Csa_022695 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 2.04e-09
Identity = 44/86 (51.16%), Postives = 50/86 (58.14%), Query Frame = 0 

Query: 60  VELYADDDTKMQLPFLRS-KHYTVEKV------------QMF----------ELPIAVSS 119
           VELYAD DTKM LPFLRS +HYT+EK             Q+F           L + +  
Sbjct: 663 VELYADYDTKMLLPFLRSSQHYTLEKAYDICIKKNLLREQVFILGRMGNAKQALAVIIDK 722

[Close]
BLAST of Chy12G213410 vs. NCBI nr
Match: OWM73719.1 (hypothetical protein CDL15_Pgr026823 [Punica granatum])

HSP 1 Score: 64.7 bits (156), Expect = 3.85e-09
Identity = 38/63 (60.32%), Postives = 43/63 (68.25%), Query Frame = 0 

Query: 60  VELYADDDTKMQLPFLRS-KHYTVEKVQMFELPIAVSSGY---DAVEFVSMQHDDELWEE 118
           VELYAD D KM LPFLRS +HYT+EK       I V        AVEFV+MQHDD+LWEE
Sbjct: 668 VELYADCDPKMLLPFLRSSQHYTLEKAY----DICVKRDLVKEQAVEFVTMQHDDDLWEE 726

[Close]
BLAST of Chy12G213410 vs. TAIR 10
Match: AT1G08190.1 (vacuolar protein sorting 41 )

HSP 1 Score: 58.9 bits (141), Expect = 3.3e-09
Identity = 41/85 (48.24%), Postives = 49/85 (57.65%), Query Frame = 0 

Query: 60  VELYADDDTKMQLPFLR-SKHYTVEKV------------QMFEL--------PIAV---- 119
           VELYA+ DTKM LPFLR S+HY +EK             Q+F L         +AV    
Sbjct: 674 VELYAEYDTKMLLPFLRSSQHYKLEKAYELCVKKDFLREQVFVLGRMGNAKQALAVIINK 733

The following BLAST results are available for this feature:
BLAST of Chy12G213410 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P930434.6e-0848.24Vacuolar protein sorting-associated protein 41 homolog OS=Arabidopsis thaliana O... [more]
P932315.1e-0747.13Vacuolar protein sorting-associated protein 41 homolog OS=Solanum lycopersicum O... [more]
BLAST of Chy12G213410 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LY231.8e-0752.33Vacuolar protein sorting-associated protein 41 homolog OS=Cucumis sativus OX=365... [more]
A0A218WML33.1e-0760.32Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr026823 PE=4 SV=1[more]
A0A5D3BNM74.1e-0751.16Vacuolar protein sorting-associated protein 41 homolog OS=Cucumis melo var. maku... [more]
A0A5A7U9Q04.1e-0751.16Vacuolar protein sorting-associated protein 41-like protein OS=Cucumis melo var.... [more]
A0A1S3CGC34.1e-0751.16Vacuolar protein sorting-associated protein 41 homolog OS=Cucumis melo OX=3656 G... [more]
BLAST of Chy12G213410 vs. NCBI nr
Match NameE-valueIdentityDescription
GFQ01023.11.11e-0961.67vacuolar protein sorting-associated protein 41 homolog [Phtheirospermum japonicu... [more]
XP_038894313.12.01e-0951.16vacuolar protein sorting-associated protein 41 homolog isoform X2 [Benincasa his... [more]
XP_038894312.12.04e-0951.16vacuolar protein sorting-associated protein 41 homolog isoform X1 [Benincasa his... [more]
XP_004139459.12.04e-0951.16vacuolar protein sorting-associated protein 41 homolog [Cucumis sativus] >KGN648... [more]
OWM73719.13.85e-0960.32hypothetical protein CDL15_Pgr026823 [Punica granatum][more]
BLAST of Chy12G213410 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G08190.13.3e-0948.24vacuolar protein sorting 41 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy12G213410.1Chy12G213410.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046907 intracellular transport
biological_process GO:0015031 protein transport
cellular_component GO:0110165 cellular anatomical entity