Chy12G211430 (gene) Cucumber (hystrix) v1

Overview
NameChy12G211430
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH12: 7598754 .. 7599455 (+)
RNA-Seq ExpressionChy12G211430
SyntenyChy12G211430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAATCCTCCCTGTAACTGTGGGTCTAAAGCACGTGCATCTGTAGTTAAGCATGTGCTTTGTTCACTGATTAAGGCAAGAATTAGACTGTATTTGTTGGCTGGTGCCTTAACAGGTAAGGGTCCTACCAAACCCTTGGCCCATTCCACCCATTTGCTCTGTTGACTGACCTAATGTAAGCTCATTATTTTATTTTATATGCTCTCAATCCCTTTTCTTCTTCTTTACATAATGATGTTATCCAGTTTGAAGCCGTAGTTTATTTCCTATGTCCTTAGCTATATCATGGATTTGACTTGACCCAATATATACTTGAGTAGTGAGAACCAGATGGATTAGATGGTCACAACTTTTGGGCAAATTGTGGGTTTTCCTTTCTCCCTGCCCAGTCCCTTTTGTATCCTAGCTGGTTTCATGATGAAATTACAAATTAGTGACTAGTGGAGTATCTAATCATGAAAGCTGTCCAAATCATGAATTTACACTCCATCTGTGTGAGAGAGGGGCCGTTGTATCTTACAATTTAGATTTAGAGAACAAGTAGCAGAAACATTCTTAGACTCCCTTGTCTAATCAATCACTCTTAAGGAGACGTTTAGGACAACAAAGACGTTGCTAAGACCAAAGCAGCAACTAAGCAAATGGTGGATGCTTCTTCTTTCCTGTTTTATCAACACGATATTGTAGAGAAGAGATTAA

mRNA sequence

ATGTTGAATCCTCCCTGTAACTGTGGGTCTAAAGCACGTGCATCTGTAGTTAAGCATGTGCTTTGTTCACTGATTAAGGCAAGAATTAGACTGTATTTGTTGGCTGGTGCCTTAACAGTCCCTTTTCTTCTTCTTTACATAATGATGTTATCCAGTTTGAAGCCGTAAGATTAA

Coding sequence (CDS)

ATGTTGAATCCTCCCTGTAACTGTGGGTCTAAAGCACGTGCATCTGTAGTTAAGCATGTGCTTTGTTCACTGATTAAGGCAAGAATTAGACTGTATTTGTTGGCTGGTGCCTTAACAGTCCCTTTTCTTCTTCTTTACATAATGATGTTATCCAGTTTGAAGCCGTAAGATTAA

Protein sequence

MLNPPCNCGSKARASVVKHVLCSLIKARIRLYLLAGALTVPFLLLYIMMLSSLKP*D*
Homology
[Close]
BLAST of Chy12G211430 vs. ExPASy TrEMBL
Match: A0A0A0LYG4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G699570 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.4e-18
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 0 

Query: 1  MLNPPCNCGSKARASVVKHVLCSLIKARIRLYLLAGALTVPFLLLYIMMLSSLK 55
          MLNPPCNCGSK RASVVKHVLCSLIKARIRLYLLAGALTVPFLLLYIMMLSSL+
Sbjct: 1  MLNPPCNCGSKPRASVVKHVLCSLIKARIRLYLLAGALTVPFLLLYIMMLSSLE 54

[Close]
BLAST of Chy12G211430 vs. NCBI nr
Match: KGN66828.1 (hypothetical protein Csa_006838 [Cucumis sativus])

HSP 1 Score: 100 bits (248), Expect = 3.43e-26
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 0 

Query: 1  MLNPPCNCGSKARASVVKHVLCSLIKARIRLYLLAGALTVPFLLLYIMMLSSLK 54
          MLNPPCNCGSK RASVVKHVLCSLIKARIRLYLLAGALTVPFLLLYIMMLSSL+
Sbjct: 1  MLNPPCNCGSKPRASVVKHVLCSLIKARIRLYLLAGALTVPFLLLYIMMLSSLE 54

The following BLAST results are available for this feature:
BLAST of Chy12G211430 vs.
Match NameE-valueIdentityDescription
BLAST of Chy12G211430 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYG41.4e-1896.30Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G699570 PE=4 SV=1[more]
BLAST of Chy12G211430 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66828.13.43e-2696.30hypothetical protein Csa_006838 [Cucumis sativus][more]
BLAST of Chy12G211430 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy12G211430.1Chy12G211430.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane