Chy10G174500 (gene) Cucumber (hystrix) v1

Overview
NameChy10G174500
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionDUF4216 domain-containing protein
LocationchrH10: 6450023 .. 6450820 (+)
RNA-Seq ExpressionChy10G174500
SyntenyChy10G174500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAATTTTACTGACGAAGAACTTAGTGTTGATGAGTTGAATGCAACATTTGGAATTGAGGATGATGAACATCTTGGTACTGAAAATGAAACCCCAAAGCAGATATGTAGACCACGAGGACCAACTATTATGTTCGATGTAATTCGCATTAGAAGTTTGGGAGAGAAGAAGGTAGTGATGTACAATGAAGACGGAGTACCTATTGGTGAGAATGGAGCAAAGTTGAAGTCTTTCATATGTACTGCAACACATTATCATGTCCCGATCACATATACATCTTGGAAAAGTGTGCCTGTAGAACTGAAAGATAAAATATTCAGTACGGTTGAGGTATATATAATTTCAATGTGCTTTTATTGATAATGTTCCTGATGTACACTTTATTAATTACTTTTAAATATTTAGGCTGCATTCGTCATTGATCCAAGATCTAGGAAAAATATTCTCCAAACTGCAGGCATTTCGTTTCATCAGTTTAAGTGTTGGCTAACAACGAAATACATTATGCCACATAAGGATGAACCGCAACTCCTACAAGTTCCACCAGAAAAGTATTCATTTATTGATCAACATCATTGGGAAGAATTTGTAAGGTCGAGATTGTGTGAAACTTTTCAGGTATGTTACTTTCTCACTAACAAATATATTTTGTAAGGTCTAGATTGTGTGTTACTTTTTCACTAACAATATATTTGAAAATAAGAAAAAAGACAATTGCAACAAGATAGACAATCTAAGAACAAGTATAACCATATGATTTCGAGGAAGGGTTATGCCAATCTTATTGAGGAAATG

mRNA sequence

ATGGACAATTTTACTGACGAAGAACTTAGTTGAAAATGAAACCCCAAAGCAGATATGTAGACCACGAGGACCAACTATTATGTTCGATGTAATTCGCATTAGAAGTTTGGGAGAGAAGAAGGTAGTGATGTACAATGAAGACGGAGTACCTATTGGTGAGAATGGAGCAAAGTTGAAGTCTTTCATATGTACTGCAACACATTATCATGTCCCGATCACATATACATCTTGGAAAAGTGTGCCTGTAGAACTGAAAGATAAAATATTCAGTACGGTTGAGGCTGCATTCGTCATTGATCCAAGATCTAGGAAAAATATTCTCCAAACTGCAGGCATTTCGTTTCATCAGTTTAAGTGTTGGCTAACAACGAAATACATTATGCCACATAAGGATGAACCGCAACTCCTACAAGTTCCACCAGAAAAGTATTCATTTATTGATCAACATCATTGGGAAGAATTTGTAAGGTCGAGATTGTGTGAAACTTTTCAGAAAAAAGACAATTGCAACAAGATAGACAATCTAAGAACAAGTATAACCATATGATTTCGAGGAAGGGTTATGCCAATCTTATTGAGGAAATG

Coding sequence (CDS)

ATGGACAATTTTACTGACGAAGAACTTAGTTGAAAATGAAACCCCAAAGCAGATATGTAGACCACGAGGACCAACTATTATGTTCGATGTAATTCGCATTAGAAGTTTGGGAGAGAAGAAGGTAGTGATGTACAATGAAGACGGAGTACCTATTGGTGAGAATGGAGCAAAGTTGAAGTCTTTCATATGTACTGCAACACATTATCATGTCCCGATCACATATACATCTTGGAAAAGTGTGCCTGTAGAACTGAAAGATAAAATATTCAGTACGGTTGAGGCTGCATTCGTCATTGATCCAAGATCTAGGAAAAATATTCTCCAAACTGCAGGCATTTCGTTTCATCAGTTTAAGTGTTGGCTAACAACGAAATACATTATGCCACATAAGGATGAACCGCAACTCCTACAAGTTCCACCAGAAAAGTATTCATTTATTGATCAACATCATTGGGAAGAATTTGTAAGGTCGAGATTGTGTGAAACTTTTCAGAAAAAAGACAATTGCAACAAGATAGACAATCTAAGAACAAGTATAACCATATGATTTCGAGGAAGGGTTATGCCAATCTTATTGAGGAAATG

Protein sequence

MDNFTDEELS*K*NPKADM*TTRTNYYVRCNSH*KFGREEGSDVQ*RRSTYW*EWSKVEVFHMYCNTLSCPDHIYILEKCACRTER*NIQYG*GCIRH*SKI*EKYSPNCRHFVSSV*VLANNEIHYAT*G*TATPTSSTRKVFIY*STSLGRICKVEIV*NFSEKRQLQQDRQSKNKYNHMISRKGYANLIEEM
Homology
[Close]
BLAST of Chy10G174500 vs. ExPASy TrEMBL
Match: A0A5A7VQR7 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold50G00060 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.2e-06
Identity = 30/33 (90.91%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 163 FSEKRQLQQDRQSKNKYNHMISRKGYANLIEEM 196
           F EKRQLQQDRQSKNKYNH ISRKGYANL EEM
Sbjct: 240 FQEKRQLQQDRQSKNKYNHRISRKGYANLKEEM 272

[Close]
BLAST of Chy10G174500 vs. ExPASy TrEMBL
Match: A0A5A7V3I1 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G005170 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.2e-06
Identity = 30/33 (90.91%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 163 FSEKRQLQQDRQSKNKYNHMISRKGYANLIEEM 196
           F EKRQLQQDRQSKNKYNH ISRKGYANL EEM
Sbjct: 144 FQEKRQLQQDRQSKNKYNHRISRKGYANLKEEM 176

[Close]
BLAST of Chy10G174500 vs. ExPASy TrEMBL
Match: A0A5D3DGP6 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold530G00560 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.2e-06
Identity = 30/33 (90.91%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 163 FSEKRQLQQDRQSKNKYNHMISRKGYANLIEEM 196
           F EKRQLQQDRQSKNKYNH ISRKGYANL EEM
Sbjct: 240 FQEKRQLQQDRQSKNKYNHRISRKGYANLKEEM 272

[Close]
BLAST of Chy10G174500 vs. ExPASy TrEMBL
Match: A0A5A7TJM6 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G00890 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.1e-06
Identity = 31/43 (72.09%), Postives = 34/43 (79.07%), Query Frame = 0 

Query: 153 RICKVEIV*NFSEKRQLQQDRQSKNKYNHMISRKGYANLIEEM 196
           R+C+      F EKRQLQQDR+SKNKYNH ISRKGYANL EEM
Sbjct: 288 RLCE-----TFQEKRQLQQDRRSKNKYNHRISRKGYANLKEEM 325

[Close]
BLAST of Chy10G174500 vs. ExPASy TrEMBL
Match: A0A5A7U440 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G001860 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.2e-06
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 163 FSEKRQLQQDRQSKNKYNHMISRKGYANLIEEM 196
           F EKRQLQQDR+SKNKYNH ISRKGYANL EEM
Sbjct: 98  FQEKRQLQQDRRSKNKYNHRISRKGYANLKEEM 130

[Close]
BLAST of Chy10G174500 vs. NCBI nr
Match: KAE8648270.1 (hypothetical protein Csa_017799, partial [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 1.58e-08
Identity = 31/44 (70.45%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 152 GRICKVEIV*NFSEKRQLQQDRQSKNKYNHMISRKGYANLIEEM 195
            R+C+      F EKR LQQDRQSKNKYNH ISRKGY NLIEEM
Sbjct: 64  SRLCET-----FQEKRLLQQDRQSKNKYNHKISRKGYVNLIEEM 102

[Close]
BLAST of Chy10G174500 vs. NCBI nr
Match: XP_031742558.1 (uncharacterized protein LOC116404374 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 4.39e-08
Identity = 30/45 (66.67%), Postives = 35/45 (77.78%), Query Frame = 0 

Query: 151 LGRICKVEIV*NFSEKRQLQQDRQSKNKYNHMISRKGYANLIEEM 195
           + R+C+      F EKR LQQDR+SKNKYNH ISRKGYANLIE+M
Sbjct: 1   MSRLCET-----FQEKRLLQQDRRSKNKYNHRISRKGYANLIEKM 40

[Close]
BLAST of Chy10G174500 vs. NCBI nr
Match: KAA0050004.1 (putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 5.98e-08
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 163 FSEKRQLQQDRQSKNKYNHMISRKGYANLIEEM 195
           F EKRQLQQDR+SKNKYNH ISRKGYANL EEM
Sbjct: 98  FQEKRQLQQDRRSKNKYNHRISRKGYANLKEEM 130

[Close]
BLAST of Chy10G174500 vs. NCBI nr
Match: KAE8648328.1 (hypothetical protein Csa_023122, partial [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 1.29e-07
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 152 GRICKVEIV*NFSEKRQLQQDRQSKNKYNHMISRKGYANLIEEM 195
            R+C+      F EKR LQQDR+SKNKYNH ISRKGY NLIEEM
Sbjct: 5   SRLCET-----FQEKRLLQQDRRSKNKYNHRISRKGYVNLIEEM 43

[Close]
BLAST of Chy10G174500 vs. NCBI nr
Match: KAA0062148.1 (putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 1.99e-07
Identity = 30/33 (90.91%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 163 FSEKRQLQQDRQSKNKYNHMISRKGYANLIEEM 195
           F EKRQLQQDRQSKNKYNH ISRKGYANL EEM
Sbjct: 144 FQEKRQLQQDRQSKNKYNHRISRKGYANLKEEM 176

The following BLAST results are available for this feature:
BLAST of Chy10G174500 vs.
Match NameE-valueIdentityDescription
BLAST of Chy10G174500 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VQR73.2e-0690.91Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7V3I13.2e-0690.91Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3DGP63.2e-0690.91Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TJM67.1e-0672.09Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7U4409.2e-0687.88Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of Chy10G174500 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8648270.11.58e-0870.45hypothetical protein Csa_017799, partial [Cucumis sativus][more]
XP_031742558.14.39e-0866.67uncharacterized protein LOC116404374 [Cucumis sativus][more]
KAA0050004.15.98e-0887.88putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa][more]
KAE8648328.11.29e-0768.18hypothetical protein Csa_023122, partial [Cucumis sativus][more]
KAA0062148.11.99e-0790.91putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa][more]
BLAST of Chy10G174500 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy10G174500.1Chy10G174500.1mRNA