Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCAAACAAGGTATTCGTGAAATTGCTGGACCACTAATACTGTTACAAATATGAGCTTGGGAACGATTCCCAATAGTGGTTCCACAACTCCTACATGTCAATGCCCATCAATTACATGATCGAGCTTATGGTTCAAGGTATGTTATTTCAACTTAACTTAAATTAACAACTTTTTATATGTAATAGATTTAAAATCTACAATATTACTTGAACAATACAGATGGAGAGATCAATTTTGTGTAACCCGATCGGCTACACATGTAGTCTCTTAGTGTAGGTATATGTCTGATCTTCTTCAACCTGATCAGGTACGTCGTGCTAAACTTGAATTTTAAGTTTTATATTATTTGTTTCATACAATATGTTGTGTTTTAGATTATCTAGGAGTCGTACAAAGTCATCATAATTTGCCACATTTCTGTACCAACGGTCAAGACATATGGATGACGGTTAGTCCTCTCATATGTTTCTACATTGGTGAGTGGCATCAACCTGACAGAACACTTAGACAATTTGGTATTCAACAAGGTGTTCCACGTGGCTGTAATACTGAACCACTTTTGCACGACATTGACCTAAGAACTGCTGATTGGTCAAATAGAGTTGCTCATTTAGTGATGCAATGGCTAAATCGCATAAGGTTTATTGCTGAGGGACCTCCAATTGGGCAATTTCATATGGATGTAACTCCAGAATACATCCATTGGTACAAAAACATCACCAGGCTCTATATCACCTGACCAGAAGCTGTTATGGGTCATCTGGTACACATTTAAATACTGTCTAATTATTTTAGTATAAATTTATTTTCAATGCTTTCTAATTTATTTTAATATTTAACAGACATCGTCGAACAATAGTAGACTTCAAGATGTTTCACATGATCCACAACAGGTCCTAAATATATGTAGTGATAACGAGCAGTACATGGAGAACATTCACTATATGTACGATGTCCCTATTGTACCTGATCCAGTTCAAATGAGACGTGCTCGCGGGCAAGAGTCTGATCAATTGGAAGAAGTTAACCAACACATGGAAGAAGTGCCTCCCGTGACACAGACACAGAGCAAGCATGGTTACGTTAGTCCAATAATGATGATGCCAGCATTTGGAACAACATATTATGATTCAGGATTCGGTCAATTGTTAAACTTTGGAACATGATATTATAATTCAGAGGCAAGTCCATCATCATCAAACTTTGGGCAACAATACTATGATTTAGGGAGTGATCCATCATCTTCATACATGCATGGTCACAGATGCGGTCATGGAGAACATTATGAATATTTGTACTACGAAATGCCTGCAACAGTACCTGAGCAACTAGATGAGCAACAA
mRNA sequence
ATCCAAACAAGGTATTCGTGAAATTGCTGGACCACTAATACTGTTACAAATATGAGCTTGGGAACGATTCCCAATAGTGGTTCCACAACTCCTACATGTCAATGCCCATCAATTACATGATCGAGCTTATGGTTCAAGATGGAGAGATCAATTTTGTGTAACCCGATCGGCTACACATGTAGTCTCTTAGTGTAGGTATATGTCTGATCTTCTTCAACCTGATCAGGTACGTCGTGCTAAACTTGAATTTTAAGTTTTATATTATTTGTTTCATACAATATGTTGTGTTTTAGATTATCTAGGAGTCGTACAAAGTCATCATAATTTGCCACATTTCTGTACCAACGGTCAAGACATATGGATGACGGTTAGTCCTCTCATATGTTTCTACATTGGTGAGTGGCATCAACCTGACAGAACACTTAGACAATTTGGTATTCAACAAGGTGTTCCACGTGGCTGTAATACTGAACCACTTTTGCACGACATTGACCTAAGAACTGCTGATTGGTCAAATAGAGTTGCTCATTTAGTGATGCAATGGCTAAATCGCATAAGGTTTATTGCTGAGGGACCTCCAATTGGGCAATTTCATATGGATGTAACTCCAGAATACATCCATTGGTACAAAAACATCACCAGGCTCTATATCACCTGACCAGAAGCTGTTATGGGTCATCTGACATCGTCGAACAATAGTAGACTTCAAGATGTTTCACATGATCCACAACAGGTCCTAAATATATGTAGTGATAACGAGCAGTACATGGAGAACATTCACTATATGTACGATGTCCCTATTGTACCTGATCCAGTTCAAATGAGACGTGCTCGCGGGCAAGAGTCTGATCAATTGGAAGAAGTTAACCAACACATGGAAGAAGTGCCTCCCGTGACACAGACACAGAGCAAGCATGGTTACGTTAGTCCAATAATGATGATGCCAGCATTTGGAACAACATATTATGATTCAGGATTCGGTCAATTGTTAAACTTTGGAACATGATATTATAATTCAGAGGCAATGATCCATCATCTTCATACATGCATGGTCACAGATGCGGTCATGGAGAACATTATGAATATTTGTACTACGAAATGCCTGCAACAGTACCTGAGCAACTAGATGAGCAACAA
Coding sequence (CDS)
ATCCAAACAAGGTATTCGTGAAATTGCTGGACCACTAATACTGTTACAAATATGAGCTTGGGAACGATTCCCAATAGTGGTTCCACAACTCCTACATGTCAATGCCCATCAATTACATGATCGAGCTTATGGTTCAAGATGGAGAGATCAATTTTGTGTAACCCGATCGGCTACACATGTAGTCTCTTAGTGTAGGTATATGTCTGATCTTCTTCAACCTGATCAGGTACGTCGTGCTAAACTTGAATTTTAAGTTTTATATTATTTGTTTCATACAATATGTTGTGTTTTAGATTATCTAGGAGTCGTACAAAGTCATCATAATTTGCCACATTTCTGTACCAACGGTCAAGACATATGGATGACGGTTAGTCCTCTCATATGTTTCTACATTGGTGAGTGGCATCAACCTGACAGAACACTTAGACAATTTGGTATTCAACAAGGTGTTCCACGTGGCTGTAATACTGAACCACTTTTGCACGACATTGACCTAAGAACTGCTGATTGGTCAAATAGAGTTGCTCATTTAGTGATGCAATGGCTAAATCGCATAAGGTTTATTGCTGAGGGACCTCCAATTGGGCAATTTCATATGGATGTAACTCCAGAATACATCCATTGGTACAAAAACATCACCAGGCTCTATATCACCTGACCAGAAGCTGTTATGGGTCATCTGACATCGTCGAACAATAGTAGACTTCAAGATGTTTCACATGATCCACAACAGGTCCTAAATATATGTAGTGATAACGAGCAGTACATGGAGAACATTCACTATATGTACGATGTCCCTATTGTACCTGATCCAGTTCAAATGAGACGTGCTCGCGGGCAAGAGTCTGATCAATTGGAAGAAGTTAACCAACACATGGAAGAAGTGCCTCCCGTGACACAGACACAGAGCAAGCATGGTTACGTTAGTCCAATAATGATGATGCCAGCATTTGGAACAACATATTATGATTCAGGATTCGGTCAATTGTTAAACTTTGGAACATGATATTATAATTCAGAGGCAATGATCCATCATCTTCATACATGCATGGTCACAGATGCGGTCATGGAGAACATTATGAATATTTGTACTACGAAATGCCTGCAACAGTACCTGAGCAACTAGATGAGCAACAA
Protein sequence
IQTRYS*NCWTTNTVTNMSLGTIPNSGSTTPTCQCPSIT*SSLWFKMERSILCNPIGYTCSLLV*VYV*SSST*SGTSC*T*ILSFILFVSYNMLCFRLSRSRTKSS*FATFLYQRSRHMDDG*SSHMFLHW*VAST*QNT*TIWYSTRCSTWL*Y*TTFARH*PKNC*LVK*SCSFSDAMAKSHKVYC*GTSNWAISYGCNSRIHPLVQKHHQALYHLTRSCYGSSDIVEQ**TSRCFT*STTGPKYM***RAVHGEHSLYVRCPYCT*SSSNETCSRARV*SIGRS*PTHGRSASRDTDTEQAWLR*SNNDDASIWNNIL*FRIRSIVKLWNMIL*FRGNDPSSSYMHGHRCGHGEHYEYLYYEMPATVPEQLDEQQ
Homology
BLAST of Chy10G172600 vs. ExPASy TrEMBL
Match:
A0A5A7U558 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00220 PE=4 SV=1)
HSP 1 Score: 71.2 bits (173), Expect = 1.0e-08
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0
Query: 341 GNDPSSSYMHGHRCGHGEHYEYLYYEMPATVPEQLDEQQ 380
G+DPSSSYMHGH GHGEH EYLYY++PA VPEQ DEQQ
Sbjct: 241 GSDPSSSYMHGHGRGHGEHNEYLYYKVPAAVPEQSDEQQ 279
BLAST of Chy10G172600 vs. ExPASy TrEMBL
Match:
A0A5D3BUX8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00210 PE=4 SV=1)
HSP 1 Score: 70.9 bits (172), Expect = 1.3e-08
Identity = 51/126 (40.48%), Postives = 64/126 (50.79%), Query Frame = 0
Query: 275 ETCSRARV*SIGRS*PTHGRSAS---RDTDTEQAW------------------LR*SNND 334
ET S ARV SIGRS PT GRSAS T +E ++ + S++
Sbjct: 21 ETSSSARVQSIGRSCPTRGRSASVTQTQTQSEHSYVSPVMMMPTFGTTYYDSGVNQSSDF 80
Query: 335 DASIWNNIL*FRIRSIVKLWNMIL*FRGNDPSSSYMHGHRCGHGEHYEYLYYEMPATVPE 380
+N+ + + + G+DPSS YMHGH G GEH EYLYYE+ A VPE
Sbjct: 81 GRGYYNSEAGPSSTDFGQQYYDL----GSDPSSLYMHGHGRGRGEHNEYLYYEVLAAVPE 140
BLAST of Chy10G172600 vs. ExPASy TrEMBL
Match:
A0A5A7TEE9 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold744G00760 PE=4 SV=1)
HSP 1 Score: 70.5 bits (171), Expect = 1.7e-08
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 0
Query: 341 GNDPSSSYMHGHRCGHGEHYEYLYYEMPATVPEQLDEQQ 380
G+DPSSSYMHGHR G GEH EYLYYE+PATV EQ DEQQ
Sbjct: 359 GSDPSSSYMHGHRRGRGEHNEYLYYEVPATVLEQSDEQQ 397
BLAST of Chy10G172600 vs. ExPASy TrEMBL
Match:
A0A5D3E0V4 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold54211G00010 PE=4 SV=1)
HSP 1 Score: 70.5 bits (171), Expect = 1.7e-08
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 0
Query: 341 GNDPSSSYMHGHRCGHGEHYEYLYYEMPATVPEQLDEQQ 380
G+DPSSSYMHGHR G GEH EYLYYE+PATV EQ DEQQ
Sbjct: 78 GSDPSSSYMHGHRRGRGEHNEYLYYEVPATVLEQSDEQQ 116
BLAST of Chy10G172600 vs. ExPASy TrEMBL
Match:
A0A5D3CWX5 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001770 PE=4 SV=1)
HSP 1 Score: 70.1 bits (170), Expect = 2.3e-08
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 0
Query: 342 NDPSSSYMHGHRCGHGEHYEYLYYEMPATVPEQLDEQQ 380
+DPSSSY+HGH GHGEH EYLYYE+PA VPEQ DEQQ
Sbjct: 46 SDPSSSYLHGHEHGHGEHIEYLYYEVPAAVPEQSDEQQ 83
BLAST of Chy10G172600 vs. NCBI nr
Match:
TYK16383.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 68.9 bits (167), Expect = 2.50e-10
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 0
Query: 342 NDPSSSYMHGHRCGHGEHYEYLYYEMPATVPEQLDEQQ 379
+DPSSSY+HGH GHGEH EYLYYE+PA VPEQ DEQQ
Sbjct: 46 SDPSSSYLHGHEHGHGEHIEYLYYEVPAAVPEQSDEQQ 83
BLAST of Chy10G172600 vs. NCBI nr
Match:
KAA0050314.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK03531.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 70.5 bits (171), Expect = 2.71e-10
Identity = 51/126 (40.48%), Postives = 64/126 (50.79%), Query Frame = 0
Query: 275 ETCSRARV*SIGRS*PTHGRSAS---RDTDTEQAWL------------------R*SNND 334
ET S ARV SIGRS PT GRSAS T +E +++ S++
Sbjct: 21 ETSSSARVQSIGRSCPTRGRSASVTQTQTQSEHSYVSPVMMMPTFGTTYYDSGVNQSSDF 80
Query: 335 DASIWNNIL*FRIRSIVKLWNMIL*FRGNDPSSSYMHGHRCGHGEHYEYLYYEMPATVPE 379
+N+ + + + G+DPSS YMHGH G GEH EYLYYE+ A VPE
Sbjct: 81 GRGYYNSEAGPSSTDFGQQYYDL----GSDPSSLYMHGHGRGRGEHNEYLYYEVLAAVPE 140
BLAST of Chy10G172600 vs. NCBI nr
Match:
TYK29727.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 68.9 bits (167), Expect = 5.03e-10
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 0
Query: 341 GNDPSSSYMHGHRCGHGEHYEYLYYEMPATVPEQLDEQQ 379
G+DPSSSYMHGHR G GEH EYLYYE+PATV EQ DEQQ
Sbjct: 78 GSDPSSSYMHGHRRGRGEHNEYLYYEVPATVLEQSDEQQ 116
BLAST of Chy10G172600 vs. NCBI nr
Match:
KAA0062959.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 67.0 bits (162), Expect = 1.21e-09
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0
Query: 342 NDPSSSYMHGHRCGHGEHYEYLYYEMPATVPEQLDEQQ 379
+DPSSSYMHGH G GEH EYLYYE+PA VPEQ DEQQ
Sbjct: 46 SDPSSSYMHGHEHGRGEHIEYLYYEVPAAVPEQSDEQQ 83
BLAST of Chy10G172600 vs. NCBI nr
Match:
KAA0050408.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYJ97999.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 69.7 bits (169), Expect = 2.66e-09
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0
Query: 341 GNDPSSSYMHGHRCGHGEHYEYLYYEMPATVPEQLDEQQ 379
G+DPSSSYMHGH GHGEH EYLYY++PA VPEQ DEQQ
Sbjct: 241 GSDPSSSYMHGHGRGHGEHNEYLYYKVPAAVPEQSDEQQ 279
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7U558 | 1.0e-08 | 79.49 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| A0A5D3BUX8 | 1.3e-08 | 40.48 | GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... | [more] |
| A0A5A7TEE9 | 1.7e-08 | 82.05 | Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... | [more] |
| A0A5D3E0V4 | 1.7e-08 | 82.05 | GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... | [more] |
| A0A5D3CWX5 | 2.3e-08 | 78.95 | GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| TYK16383.1 | 2.50e-10 | 78.95 | GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... | [more] |
| KAA0050314.1 | 2.71e-10 | 40.48 | GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... | [more] |
| TYK29727.1 | 5.03e-10 | 82.05 | GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... | [more] |
| KAA0062959.1 | 1.21e-09 | 78.95 | GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... | [more] |
| KAA0050408.1 | 2.66e-09 | 79.49 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
