Chy10G172600.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy10G172600.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	GATA zinc finger domain-containing protein 10-like isoform X2
Location	chrH10: 1696918 .. 1698262 (-)
Sequence length	1137
RNA-Seq Expression	Chy10G172600.1
Synteny	Chy10G172600.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCAAACAAGGTATTCGTGAAATTGCTGGACCACTAATACTGTTACAAATATGAGCTTGGGAACGATTCCCAATAGTGGTTCCACAACTCCTACATGTCAATGCCCATCAATTACATGATCGAGCTTATGGTTCAAGGTATGTTATTTCAACTTAACTTAAATTAACAACTTTTTATATGTAATAGATTTAAAATCTACAATATTACTTGAACAATACAGATGGAGAGATCAATTTTGTGTAACCCGATCGGCTACACATGTAGTCTCTTAGTGTAGGTATATGTCTGATCTTCTTCAACCTGATCAGGTACGTCGTGCTAAACTTGAATTTTAAGTTTTATATTATTTGTTTCATACAATATGTTGTGTTTTAGATTATCTAGGAGTCGTACAAAGTCATCATAATTTGCCACATTTCTGTACCAACGGTCAAGACATATGGATGACGGTTAGTCCTCTCATATGTTTCTACATTGGTGAGTGGCATCAACCTGACAGAACACTTAGACAATTTGGTATTCAACAAGGTGTTCCACGTGGCTGTAATACTGAACCACTTTTGCACGACATTGACCTAAGAACTGCTGATTGGTCAAATAGAGTTGCTCATTTAGTGATGCAATGGCTAAATCGCATAAGGTTTATTGCTGAGGGACCTCCAATTGGGCAATTTCATATGGATGTAACTCCAGAATACATCCATTGGTACAAAAACATCACCAGGCTCTATATCACCTGACCAGAAGCTGTTATGGGTCATCTGGTACACATTTAAATACTGTCTAATTATTTTAGTATAAATTTATTTTCAATGCTTTCTAATTTATTTTAATATTTAACAGACATCGTCGAACAATAGTAGACTTCAAGATGTTTCACATGATCCACAACAGGTCCTAAATATATGTAGTGATAACGAGCAGTACATGGAGAACATTCACTATATGTACGATGTCCCTATTGTACCTGATCCAGTTCAAATGAGACGTGCTCGCGGGCAAGAGTCTGATCAATTGGAAGAAGTTAACCAACACATGGAAGAAGTGCCTCCCGTGACACAGACACAGAGCAAGCATGGTTACGTTAGTCCAATAATGATGATGCCAGCATTTGGAACAACATATTATGATTCAGGATTCGGTCAATTGTTAAACTTTGGAACATGATATTATAATTCAGAGGCAAGTCCATCATCATCAAACTTTGGGCAACAATACTATGATTTAGGGAGTGATCCATCATCTTCATACATGCATGGTCACAGATGCGGTCATGGAGAACATTATGAATATTTGTACTACGAAATGCCTGCAACAGTACCTGAGCAACTAGATGAGCAACAA

mRNA sequence

ATCCAAACAAGGTATTCGTGAAATTGCTGGACCACTAATACTGTTACAAATATGAGCTTGGGAACGATTCCCAATAGTGGTTCCACAACTCCTACATGTCAATGCCCATCAATTACATGATCGAGCTTATGGTTCAAGATGGAGAGATCAATTTTGTGTAACCCGATCGGCTACACATGTAGTCTCTTAGTGTAGGTATATGTCTGATCTTCTTCAACCTGATCAGGTACGTCGTGCTAAACTTGAATTTTAAGTTTTATATTATTTGTTTCATACAATATGTTGTGTTTTAGATTATCTAGGAGTCGTACAAAGTCATCATAATTTGCCACATTTCTGTACCAACGGTCAAGACATATGGATGACGGTTAGTCCTCTCATATGTTTCTACATTGGTGAGTGGCATCAACCTGACAGAACACTTAGACAATTTGGTATTCAACAAGGTGTTCCACGTGGCTGTAATACTGAACCACTTTTGCACGACATTGACCTAAGAACTGCTGATTGGTCAAATAGAGTTGCTCATTTAGTGATGCAATGGCTAAATCGCATAAGGTTTATTGCTGAGGGACCTCCAATTGGGCAATTTCATATGGATGTAACTCCAGAATACATCCATTGGTACAAAAACATCACCAGGCTCTATATCACCTGACCAGAAGCTGTTATGGGTCATCTGACATCGTCGAACAATAGTAGACTTCAAGATGTTTCACATGATCCACAACAGGTCCTAAATATATGTAGTGATAACGAGCAGTACATGGAGAACATTCACTATATGTACGATGTCCCTATTGTACCTGATCCAGTTCAAATGAGACGTGCTCGCGGGCAAGAGTCTGATCAATTGGAAGAAGTTAACCAACACATGGAAGAAGTGCCTCCCGTGACACAGACACAGAGCAAGCATGGTTACGTTAGTCCAATAATGATGATGCCAGCATTTGGAACAACATATTATGATTCAGGATTCGGTCAATTGTTAAACTTTGGAACATGATATTATAATTCAGAGGCAATGATCCATCATCTTCATACATGCATGGTCACAGATGCGGTCATGGAGAACATTATGAATATTTGTACTACGAAATGCCTGCAACAGTACCTGAGCAACTAGATGAGCAACAA

Coding sequence (CDS)

ATCCAAACAAGGTATTCGTGAAATTGCTGGACCACTAATACTGTTACAAATATGAGCTTGGGAACGATTCCCAATAGTGGTTCCACAACTCCTACATGTCAATGCCCATCAATTACATGATCGAGCTTATGGTTCAAGATGGAGAGATCAATTTTGTGTAACCCGATCGGCTACACATGTAGTCTCTTAGTGTAGGTATATGTCTGATCTTCTTCAACCTGATCAGGTACGTCGTGCTAAACTTGAATTTTAAGTTTTATATTATTTGTTTCATACAATATGTTGTGTTTTAGATTATCTAGGAGTCGTACAAAGTCATCATAATTTGCCACATTTCTGTACCAACGGTCAAGACATATGGATGACGGTTAGTCCTCTCATATGTTTCTACATTGGTGAGTGGCATCAACCTGACAGAACACTTAGACAATTTGGTATTCAACAAGGTGTTCCACGTGGCTGTAATACTGAACCACTTTTGCACGACATTGACCTAAGAACTGCTGATTGGTCAAATAGAGTTGCTCATTTAGTGATGCAATGGCTAAATCGCATAAGGTTTATTGCTGAGGGACCTCCAATTGGGCAATTTCATATGGATGTAACTCCAGAATACATCCATTGGTACAAAAACATCACCAGGCTCTATATCACCTGACCAGAAGCTGTTATGGGTCATCTGACATCGTCGAACAATAGTAGACTTCAAGATGTTTCACATGATCCACAACAGGTCCTAAATATATGTAGTGATAACGAGCAGTACATGGAGAACATTCACTATATGTACGATGTCCCTATTGTACCTGATCCAGTTCAAATGAGACGTGCTCGCGGGCAAGAGTCTGATCAATTGGAAGAAGTTAACCAACACATGGAAGAAGTGCCTCCCGTGACACAGACACAGAGCAAGCATGGTTACGTTAGTCCAATAATGATGATGCCAGCATTTGGAACAACATATTATGATTCAGGATTCGGTCAATTGTTAAACTTTGGAACATGATATTATAATTCAGAGGCAATGATCCATCATCTTCATACATGCATGGTCACAGATGCGGTCATGGAGAACATTATGAATATTTGTACTACGAAATGCCTGCAACAGTACCTGAGCAACTAGATGAGCAACAA

Protein sequence

IQTRYS*NCWTTNTVTNMSLGTIPNSGSTTPTCQCPSIT*SSLWFKMERSILCNPIGYTCSLLV*VYV*SSST*SGTSC*T*ILSFILFVSYNMLCFRLSRSRTKSS*FATFLYQRSRHMDDG*SSHMFLHW*VAST*QNT*TIWYSTRCSTWL*Y*TTFARH*PKNC*LVK*SCSFSDAMAKSHKVYC*GTSNWAISYGCNSRIHPLVQKHHQALYHLTRSCYGSSDIVEQ**TSRCFT*STTGPKYM***RAVHGEHSLYVRCPYCT*SSSNETCSRARV*SIGRS*PTHGRSASRDTDTEQAWLR*SNNDDASIWNNIL*FRIRSIVKLWNMIL*FRGNDPSSSYMHGHRCGHGEHYEYLYYEMPATVPEQLDEQQ

Homology

[Close]

BLAST of Chy10G172600.1 vs. ExPASy TrEMBL
Match: A0A5A7U558 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00220 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.0e-08
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 341 GNDPSSSYMHGHRCGHGEHYEYLYYEMPATVPEQLDEQQ 380
           G+DPSSSYMHGH  GHGEH EYLYY++PA VPEQ DEQQ
Sbjct: 241 GSDPSSSYMHGHGRGHGEHNEYLYYKVPAAVPEQSDEQQ 279

[Close]

BLAST of Chy10G172600.1 vs. ExPASy TrEMBL
Match: A0A5D3BUX8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00210 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-08
Identity = 51/126 (40.48%), Postives = 64/126 (50.79%), Query Frame = 0


Query: 275 ETCSRARV*SIGRS*PTHGRSAS---RDTDTEQAW------------------LR*SNND 334
           ET S ARV SIGRS PT GRSAS     T +E ++                  +  S++ 
Sbjct: 21  ETSSSARVQSIGRSCPTRGRSASVTQTQTQSEHSYVSPVMMMPTFGTTYYDSGVNQSSDF 80

Query: 335 DASIWNNIL*FRIRSIVKLWNMIL*FRGNDPSSSYMHGHRCGHGEHYEYLYYEMPATVPE 380
               +N+          + +  +    G+DPSS YMHGH  G GEH EYLYYE+ A VPE
Sbjct: 81  GRGYYNSEAGPSSTDFGQQYYDL----GSDPSSLYMHGHGRGRGEHNEYLYYEVLAAVPE 140

[Close]

BLAST of Chy10G172600.1 vs. ExPASy TrEMBL
Match: A0A5A7TEE9 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold744G00760 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.7e-08
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 341 GNDPSSSYMHGHRCGHGEHYEYLYYEMPATVPEQLDEQQ 380
           G+DPSSSYMHGHR G GEH EYLYYE+PATV EQ DEQQ
Sbjct: 359 GSDPSSSYMHGHRRGRGEHNEYLYYEVPATVLEQSDEQQ 397

[Close]

BLAST of Chy10G172600.1 vs. ExPASy TrEMBL
Match: A0A5D3E0V4 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold54211G00010 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.7e-08
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 341 GNDPSSSYMHGHRCGHGEHYEYLYYEMPATVPEQLDEQQ 380
           G+DPSSSYMHGHR G GEH EYLYYE+PATV EQ DEQQ
Sbjct: 78  GSDPSSSYMHGHRRGRGEHNEYLYYEVPATVLEQSDEQQ 116

[Close]

BLAST of Chy10G172600.1 vs. ExPASy TrEMBL
Match: A0A5D3CWX5 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001770 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.3e-08
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 342 NDPSSSYMHGHRCGHGEHYEYLYYEMPATVPEQLDEQQ 380
           +DPSSSY+HGH  GHGEH EYLYYE+PA VPEQ DEQQ
Sbjct: 46  SDPSSSYLHGHEHGHGEHIEYLYYEVPAAVPEQSDEQQ 83

[Close]

BLAST of Chy10G172600.1 vs. NCBI nr
Match: TYK16383.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 2.50e-10
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 342 NDPSSSYMHGHRCGHGEHYEYLYYEMPATVPEQLDEQQ 379
           +DPSSSY+HGH  GHGEH EYLYYE+PA VPEQ DEQQ
Sbjct: 46  SDPSSSYLHGHEHGHGEHIEYLYYEVPAAVPEQSDEQQ 83

[Close]

BLAST of Chy10G172600.1 vs. NCBI nr
Match: KAA0050314.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK03531.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 2.71e-10
Identity = 51/126 (40.48%), Postives = 64/126 (50.79%), Query Frame = 0


Query: 275 ETCSRARV*SIGRS*PTHGRSAS---RDTDTEQAWL------------------R*SNND 334
           ET S ARV SIGRS PT GRSAS     T +E +++                    S++ 
Sbjct: 21  ETSSSARVQSIGRSCPTRGRSASVTQTQTQSEHSYVSPVMMMPTFGTTYYDSGVNQSSDF 80

Query: 335 DASIWNNIL*FRIRSIVKLWNMIL*FRGNDPSSSYMHGHRCGHGEHYEYLYYEMPATVPE 379
               +N+          + +  +    G+DPSS YMHGH  G GEH EYLYYE+ A VPE
Sbjct: 81  GRGYYNSEAGPSSTDFGQQYYDL----GSDPSSLYMHGHGRGRGEHNEYLYYEVLAAVPE 140

[Close]

BLAST of Chy10G172600.1 vs. NCBI nr
Match: TYK29727.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 5.03e-10
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 341 GNDPSSSYMHGHRCGHGEHYEYLYYEMPATVPEQLDEQQ 379
           G+DPSSSYMHGHR G GEH EYLYYE+PATV EQ DEQQ
Sbjct: 78  GSDPSSSYMHGHRRGRGEHNEYLYYEVPATVLEQSDEQQ 116

[Close]

BLAST of Chy10G172600.1 vs. NCBI nr
Match: KAA0062959.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 1.21e-09
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 342 NDPSSSYMHGHRCGHGEHYEYLYYEMPATVPEQLDEQQ 379
           +DPSSSYMHGH  G GEH EYLYYE+PA VPEQ DEQQ
Sbjct: 46  SDPSSSYMHGHEHGRGEHIEYLYYEVPAAVPEQSDEQQ 83

[Close]

BLAST of Chy10G172600.1 vs. NCBI nr
Match: KAA0050408.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYJ97999.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 2.66e-09
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 341 GNDPSSSYMHGHRCGHGEHYEYLYYEMPATVPEQLDEQQ 379
           G+DPSSSYMHGH  GHGEH EYLYY++PA VPEQ DEQQ
Sbjct: 241 GSDPSSSYMHGHGRGHGEHNEYLYYKVPAAVPEQSDEQQ 279

The following BLAST results are available for this feature:

BLAST of Chy10G172600.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy10G172600.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U558	1.0e-08	79.49	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3BUX8	1.3e-08	40.48	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7TEE9	1.7e-08	82.05	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5D3E0V4	1.7e-08	82.05	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5D3CWX5	2.3e-08	78.95	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]

BLAST of Chy10G172600.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK16383.1	2.50e-10	78.95	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0050314.1	2.71e-10	40.48	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
TYK29727.1	5.03e-10	82.05	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0062959.1	1.21e-09	78.95	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0050408.1	2.66e-09	79.49	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]

BLAST of Chy10G172600.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy10G172600	Chy10G172600	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy10G172600.1.exon4	Chy10G172600.1.exon4	exon
Chy10G172600.1.exon3	Chy10G172600.1.exon3	exon
Chy10G172600.1.exon2	Chy10G172600.1.exon2	exon
Chy10G172600.1.exon1	Chy10G172600.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy10G172600.1.cds4	Chy10G172600.1.cds4	CDS
Chy10G172600.1.cds3	Chy10G172600.1.cds3	CDS
Chy10G172600.1.cds2	Chy10G172600.1.cds2	CDS
Chy10G172600.1.cds1	Chy10G172600.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy10G172600.1	Chy10G172600.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance
molecular_function	GO:0046983	protein dimerization activity