CcUC10G190540 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G190540
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr10: 5599685 .. 5600430 (+)
RNA-Seq Expression	CcUC10G190540
Synteny	CcUC10G190540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAGTTTGCTATTGTAGGAGCTTATGTTCCTGATACTCGCAGTGTTGATATTATTGAGCTTCATAGACTACATAGAATATTAAATAGTTATATTGCAATATGTACATATTTTGGAGTTGCATTTTAAATAAATGTATAGGAGATGATCATGTAAACACTTTCATTGTTAACCTAACAAATAACTCTTATTTTCAAATAAAGAAAAAATTAACTCCTGTGCAATCCAACTCTTATACCAAAGAAAAAAGACTTGATTGTTAGGTGGTCGACTGTAACGTAACAGGTCTCCTTTTACTGCATGAGAGAAAAGCAACTACAGGGCACTATGTGATTGGGTGGCTAGATTGGGCTATATCGAAGTATTGATAGTAAAAATTCTCTAAAATATCCTCAAATAGAAATTTGAGATAAAATGAAATAGAAACAAAGACAACAAAATGAGCAATCCATTCAAAAAAATAAATTTTAAGTGCTCTCCCAAACATACACTAAATATAATGTTAGGTTTATTGTTAGTAATGGAAAACAAAAAGATGAACTTACAACGGGACGGTTAGCAACGTTGTAAGACCAAGCAGTAGAACCACTGCCATTCAAGCGGCCCGAACCGTCGATGAACAAGTTGTTGACTTGGTTGATACTGAGCCAGTAGTCTCCGGTGGCGAATTGCTTACCGGCAGGAGCCAACAGTTCTCCATCAAGTTGTATACGAATGACGCCATGGCATGGACCTTGAAGTAG

mRNA sequence

ATGGAAGATAATGGAAAACAAAAAGATGAACTTACAACGGGACGGTTAGCAACGTTTAGAACCACTGCCATTCAAGCGGCCCGAACCGTCGATGAACAAGTTGTTGACTTGGTTGATACTGAGCCAGTAGTCTCCGGTGGCGAATTGCTTACCGGCAGGAGCCAACAGTTCTCCATCAAGTTGTATACGAATGACGCCATGGCATGGACCTTGAAGTAG

Coding sequence (CDS)

ATGGAAGATAATGGAAAACAAAAAGATGAACTTACAACGGGACGGTTAGCAACGTTTAGAACCACTGCCATTCAAGCGGCCCGAACCGTCGATGAACAAGTTGTTGACTTGGTTGATACTGAGCCAGTAGTCTCCGGTGGCGAATTGCTTACCGGCAGGAGCCAACAGTTCTCCATCAAGTTGTATACGAATGACGCCATGGCATGGACCTTGAAGTAG

Protein sequence

MEDNGKQKDELTTGRLATFRTTAIQAARTVDEQVVDLVDTEPVVSGGELLTGRSQQFSIKLYTNDAMAWTLK

Homology

[Close]

BLAST of CcUC10G190540 vs. NCBI nr
Match: KAE8650114.1 (hypothetical protein Csa_010527, partial [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 4.3e-11
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 21 TTAIQAARTVDEQVVDLVDTEPVVSGGELLTGRSQQFSIKLYTNDAMAWTLK 73
          TTA QA +TVDEQVVD+ DT+P+V+ G+LL   SQQF+IKLYTNDAMAWTLK
Sbjct: 22 TTAGQATQTVDEQVVDIFDTKPMVADGKLLIRGSQQFAIKLYTNDAMAWTLK 73

[Close]

BLAST of CcUC10G190540 vs. ExPASy TrEMBL
Match: A0A0A0L2V8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G063630 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.1e-11
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 21 TTAIQAARTVDEQVVDLVDTEPVVSGGELLTGRSQQFSIKLYTNDAMAWTLK 73
          TTA QA +TVDEQVVD+ DT+P+V+ G+LL   SQQF+IKLYTNDAMAWTLK
Sbjct: 22 TTAGQATQTVDEQVVDIFDTKPMVADGKLLIRGSQQFAIKLYTNDAMAWTLK 73

The following BLAST results are available for this feature:

BLAST of CcUC10G190540 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650114.1	4.3e-11	73.08	hypothetical protein Csa_010527, partial [Cucumis sativus]	[more]

BLAST of CcUC10G190540 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC10G190540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2V8	2.1e-11	73.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G063630 PE=4 SV=1	[more]

BLAST of CcUC10G190540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G190540.1	CcUC10G190540.1	mRNA