CcUC02G030910 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G030910
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Ribonuclease T(2)
Location	CicolChr02: 26357507 .. 26357686 (-)
RNA-Seq Expression	CcUC02G030910
Synteny	CcUC02G030910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCAACCAAGTTGACCTCCTTAGCGCCCTTGTAGAGGGTGGAGTAATACCTGACGGGAGGATGAAATCTTGGCAAGCCGTTCATAATGCTGCGTTTGCACGATTTGGGGTAGAGCCAATTCTTCGTTGTAAAGGAGGTTGGTTGCTTGAGATCGTCATGTGTTTTTATGTTGATTGA

mRNA sequence

ATGTTCAACCAAGTTGACCTCCTTAGCGCCCTTGTAGAGGGTGGAGTAATACCTGACGGGAGGATGAAATCTTGGCAAGCCGTTCATAATGCTGCGTTTGCACGATTTGGGGTAGAGCCAATTCTTCGTTGTAAAGGAGGTTGGTTGCTTGAGATCGTCATGTGTTTTTATGTTGATTGA

Coding sequence (CDS)

ATGTTCAACCAAGTTGACCTCCTTAGCGCCCTTGTAGAGGGTGGAGTAATACCTGACGGGAGGATGAAATCTTGGCAAGCCGTTCATAATGCTGCGTTTGCACGATTTGGGGTAGAGCCAATTCTTCGTTGTAAAGGAGGTTGGTTGCTTGAGATCGTCATGTGTTTTTATGTTGATTGA

Protein sequence

MFNQVDLLSALVEGGVIPDGRMKSWQAVHNAAFARFGVEPILRCKGGWLLEIVMCFYVD

Homology

[Close]

BLAST of CcUC02G030910 vs. NCBI nr
Match: BAA10891.1 (ribonuclease (RNase LC1) [Luffa aegyptiaca])

HSP 1 Score: 67.4 bits (163), Expect = 4.7e-08
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 1   MFNQVDLLSALVEGGVIPDGRMKSWQAVHNAAFARFGVEPILRCKG----GWLLEIVMCF 57
           M N +DLLSAL  GGV+P+GR K+ Q V +A  A+ G EP+LRC+G      LLEIVMCF
Sbjct: 132 MRNSIDLLSALRVGGVVPNGRSKARQRVQSAIRAQLGKEPVLRCRGTGRQSRLLEIVMCF 191

[Close]

BLAST of CcUC02G030910 vs. NCBI nr
Match: XP_022142280.1 (ribonuclease MC-like [Momordica charantia])

HSP 1 Score: 62.4 bits (150), Expect = 1.5e-06
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 1   MFNQVDLLSALVEGGVIPDGRMKSWQAVHNAAFARFGVEPILRCKGGW----LLEIVMCF 57
           M + +DL++AL  GG+ P+GR KS Q V +A  A+FG EP+LRC+G      L+EIVMCF
Sbjct: 138 MRDSLDLMNALRVGGLAPNGRTKSRQRVQSAIRAQFGKEPVLRCRGTGRNVRLIEIVMCF 197

[Close]

BLAST of CcUC02G030910 vs. NCBI nr
Match: XP_022155091.1 (ribonuclease MC-like [Momordica charantia])

HSP 1 Score: 60.8 bits (146), Expect = 4.4e-06
Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 1   MFNQVDLLSALVEGGVIPDGRMKSWQAVHNAAFARFGVEPILRCKGGW----LLEIVMCF 57
           M N +DL++AL  GG+ P+G  KS Q V +A    FG EP+LRC+G      L+EIVMCF
Sbjct: 134 MRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCRGTGSNIRLIEIVMCF 193

[Close]

BLAST of CcUC02G030910 vs. NCBI nr
Match: XP_038905534.1 (ribonuclease MC-like [Benincasa hispida])

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-04
Identity = 28/61 (45.90%), Postives = 37/61 (60.66%), Query Frame = 0


Query: 1   MFNQVDLLSALVEGGVIPDGRMKSWQAVHNAAFARFGVEPILRCKGG-----WLLEIVMC 57
           M + +DLLS +  GGVIP+G  K+ Q V +   + FG +PILRCK        L E+VMC
Sbjct: 133 MRHSIDLLSVMRTGGVIPNGASKAKQRVESVISSHFGKDPILRCKTASNGQVLLTEVVMC 192

[Close]

BLAST of CcUC02G030910 vs. NCBI nr
Match: XP_004147499.1 (ribonuclease MC [Cucumis sativus] >KGN59560.1 hypothetical protein Csa_002553 [Cucumis sativus])

HSP 1 Score: 54.7 bits (130), Expect = 3.2e-04
Identity = 30/61 (49.18%), Postives = 36/61 (59.02%), Query Frame = 0


Query: 1   MFNQVDLLSALVEGGVIPDGRMKSWQAVHNAAFARFGVEPILRCKGG-----WLLEIVMC 57
           M + +DLLS L  GGV P+G  K+ Q V  A  + FG +PILRCK        L EIVMC
Sbjct: 134 MRHGIDLLSVLRTGGVGPNGASKAKQRVETAISSHFGKDPILRCKKASNGQVLLTEIVMC 193

[Close]

BLAST of CcUC02G030910 vs. ExPASy TrEMBL
Match: Q40115 (Ribonuclease (RNase LC1) OS=Luffa aegyptiaca OX=3670 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.3e-08
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 1   MFNQVDLLSALVEGGVIPDGRMKSWQAVHNAAFARFGVEPILRCKG----GWLLEIVMCF 57
           M N +DLLSAL  GGV+P+GR K+ Q V +A  A+ G EP+LRC+G      LLEIVMCF
Sbjct: 132 MRNSIDLLSALRVGGVVPNGRSKARQRVQSAIRAQLGKEPVLRCRGTGRQSRLLEIVMCF 191

[Close]

BLAST of CcUC02G030910 vs. ExPASy TrEMBL
Match: A0A6J1CKH7 (Ribonuclease T(2) OS=Momordica charantia OX=3673 GN=LOC111012440 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.4e-07
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 1   MFNQVDLLSALVEGGVIPDGRMKSWQAVHNAAFARFGVEPILRCKGGW----LLEIVMCF 57
           M + +DL++AL  GG+ P+GR KS Q V +A  A+FG EP+LRC+G      L+EIVMCF
Sbjct: 138 MRDSLDLMNALRVGGLAPNGRTKSRQRVQSAIRAQFGKEPVLRCRGTGRNVRLIEIVMCF 197

[Close]

BLAST of CcUC02G030910 vs. ExPASy TrEMBL
Match: A0A6J1DQN7 (ribonuclease MC-like OS=Momordica charantia OX=3673 GN=LOC111022224 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.1e-06
Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 1   MFNQVDLLSALVEGGVIPDGRMKSWQAVHNAAFARFGVEPILRCKGGW----LLEIVMCF 57
           M N +DL++AL  GG+ P+G  KS Q V +A    FG EP+LRC+G      L+EIVMCF
Sbjct: 134 MRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCRGTGSNIRLIEIVMCF 193

[Close]

BLAST of CcUC02G030910 vs. ExPASy TrEMBL
Match: A0A0A0LC37 (Ribonuclease T(2) OS=Cucumis sativus OX=3659 GN=Csa_3G825050 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-04
Identity = 30/61 (49.18%), Postives = 36/61 (59.02%), Query Frame = 0


Query: 1   MFNQVDLLSALVEGGVIPDGRMKSWQAVHNAAFARFGVEPILRCKGG-----WLLEIVMC 57
           M + +DLLS L  GGV P+G  K+ Q V  A  + FG +PILRCK        L EIVMC
Sbjct: 134 MRHGIDLLSVLRTGGVGPNGASKAKQRVETAISSHFGKDPILRCKKASNGQVLLTEIVMC 193

[Close]

BLAST of CcUC02G030910 vs. ExPASy TrEMBL
Match: A0A5A7UJY4 (Ribonuclease MC-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007930 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.6e-04
Identity = 27/61 (44.26%), Postives = 36/61 (59.02%), Query Frame = 0


Query: 1   MFNQVDLLSALVEGGVIPDGRMKSWQAVHNAAFARFGVEPILRCKGG-----WLLEIVMC 57
           M + +DLLS L  GG++P+G  K+ Q V  A  + F  +PILRCK        L EIV+C
Sbjct: 63  MRHSIDLLSVLRTGGIVPNGASKAKQRVETAISSHFAKDPILRCKTASNGQVLLTEIVIC 122

The following BLAST results are available for this feature:

BLAST of CcUC02G030910 vs. NCBI nr


Match Name	E-value	Identity	Description
BAA10891.1	4.7e-08	56.67	ribonuclease (RNase LC1) [Luffa aegyptiaca]	[more]
XP_022142280.1	1.5e-06	51.67	ribonuclease MC-like [Momordica charantia]	[more]
XP_022155091.1	4.4e-06	50.00	ribonuclease MC-like [Momordica charantia]	[more]
XP_038905534.1	1.1e-04	45.90	ribonuclease MC-like [Benincasa hispida]	[more]
XP_004147499.1	3.2e-04	49.18	ribonuclease MC [Cucumis sativus] >KGN59560.1 hypothetical protein Csa_002553 [C...	[more]

BLAST of CcUC02G030910 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC02G030910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q40115	2.3e-08	56.67	Ribonuclease (RNase LC1) OS=Luffa aegyptiaca OX=3670 PE=2 SV=1	[more]
A0A6J1CKH7	7.4e-07	51.67	Ribonuclease T(2) OS=Momordica charantia OX=3673 GN=LOC111012440 PE=3 SV=1	[more]
A0A6J1DQN7	2.1e-06	50.00	ribonuclease MC-like OS=Momordica charantia OX=3673 GN=LOC111022224 PE=3 SV=1	[more]
A0A0A0LC37	1.5e-04	49.18	Ribonuclease T(2) OS=Cucumis sativus OX=3659 GN=Csa_3G825050 PE=3 SV=1	[more]
A0A5A7UJY4	2.6e-04	44.26	Ribonuclease MC-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352...	[more]

BLAST of CcUC02G030910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036430	Ribonuclease T2-like superfamily	GENE3D	3.90.730.10		coord: 1..59 e-value: 3.6E-6 score: 29.0
IPR036430	Ribonuclease T2-like superfamily	SUPERFAMILY	55895	Ribonuclease Rh-like	coord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G030910.1	CcUC02G030910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016070	RNA metabolic process
molecular_function	GO:0033897	ribonuclease T2 activity
molecular_function	GO:0003723	RNA binding