CcUC02G030910.1 (mRNA) Watermelon (PI 537277) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTCAACCAAGTTGACCTCCTTAGCGCCCTTGTAGAGGGTGGAGTAATACCTGACGGGAGGATGAAATCTTGGCAAGCCGTTCATAATGCTGCGTTTGCACGATTTGGGGTAGAGCCAATTCTTCGTTGTAAAGGAGGTTGGTTGCTTGAGATCGTCATGTGTTTTTATGTTGATTGA ATGTTCAACCAAGTTGACCTCCTTAGCGCCCTTGTAGAGGGTGGAGTAATACCTGACGGGAGGATGAAATCTTGGCAAGCCGTTCATAATGCTGCGTTTGCACGATTTGGGGTAGAGCCAATTCTTCGTTGTAAAGGAGGTTGGTTGCTTGAGATCGTCATGTGTTTTTATGTTGATTGA ATGTTCAACCAAGTTGACCTCCTTAGCGCCCTTGTAGAGGGTGGAGTAATACCTGACGGGAGGATGAAATCTTGGCAAGCCGTTCATAATGCTGCGTTTGCACGATTTGGGGTAGAGCCAATTCTTCGTTGTAAAGGAGGTTGGTTGCTTGAGATCGTCATGTGTTTTTATGTTGATTGA MFNQVDLLSALVEGGVIPDGRMKSWQAVHNAAFARFGVEPILRCKGGWLLEIVMCFYVD Homology
BLAST of CcUC02G030910.1 vs. NCBI nr
Match: BAA10891.1 (ribonuclease (RNase LC1) [Luffa aegyptiaca]) HSP 1 Score: 67.4 bits (163), Expect = 4.7e-08 Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 0
BLAST of CcUC02G030910.1 vs. NCBI nr
Match: XP_022142280.1 (ribonuclease MC-like [Momordica charantia]) HSP 1 Score: 62.4 bits (150), Expect = 1.5e-06 Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 0
BLAST of CcUC02G030910.1 vs. NCBI nr
Match: XP_022155091.1 (ribonuclease MC-like [Momordica charantia]) HSP 1 Score: 60.8 bits (146), Expect = 4.4e-06 Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 0
BLAST of CcUC02G030910.1 vs. NCBI nr
Match: XP_038905534.1 (ribonuclease MC-like [Benincasa hispida]) HSP 1 Score: 56.2 bits (134), Expect = 1.1e-04 Identity = 28/61 (45.90%), Postives = 37/61 (60.66%), Query Frame = 0
BLAST of CcUC02G030910.1 vs. NCBI nr
Match: XP_004147499.1 (ribonuclease MC [Cucumis sativus] >KGN59560.1 hypothetical protein Csa_002553 [Cucumis sativus]) HSP 1 Score: 54.7 bits (130), Expect = 3.2e-04 Identity = 30/61 (49.18%), Postives = 36/61 (59.02%), Query Frame = 0
BLAST of CcUC02G030910.1 vs. ExPASy TrEMBL
Match: Q40115 (Ribonuclease (RNase LC1) OS=Luffa aegyptiaca OX=3670 PE=2 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 2.3e-08 Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 0
BLAST of CcUC02G030910.1 vs. ExPASy TrEMBL
Match: A0A6J1CKH7 (Ribonuclease T(2) OS=Momordica charantia OX=3673 GN=LOC111012440 PE=3 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 7.4e-07 Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 0
BLAST of CcUC02G030910.1 vs. ExPASy TrEMBL
Match: A0A6J1DQN7 (ribonuclease MC-like OS=Momordica charantia OX=3673 GN=LOC111022224 PE=3 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 2.1e-06 Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 0
BLAST of CcUC02G030910.1 vs. ExPASy TrEMBL
Match: A0A0A0LC37 (Ribonuclease T(2) OS=Cucumis sativus OX=3659 GN=Csa_3G825050 PE=3 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 1.5e-04 Identity = 30/61 (49.18%), Postives = 36/61 (59.02%), Query Frame = 0
BLAST of CcUC02G030910.1 vs. ExPASy TrEMBL
Match: A0A5A7UJY4 (Ribonuclease MC-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007930 PE=3 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 2.6e-04 Identity = 27/61 (44.26%), Postives = 36/61 (59.02%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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