Carg24193 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg24193
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RNA-binding KH domain-containing protein PEPPER-like
Location	Carg_Chr12: 8465722 .. 8470753 (+)
RNA-Seq Expression	Carg24193
Synteny	Carg24193

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAAAATTTTATTATTTCAATAATTTACAAAAATAAAAAGAAAAAAAGAAAAAAGAAAAAAGAAAAAAAAAACCTGCATTTCCTTACTTTCTTCCTCTCTTCCTTCGTCCTCTTTAAACCTCTGAAAATCTTAACCCTAACTTCTTCCTCCTTCTTCATCCTTCTTCATCTTCCTCCATGGCCACCAACACAACTACAGAGAATGGCTCCACTGATGCCGACGCCCTCAATTCAAGCCCCCAACTTGCCTTTGAAGCTGCTCCCGAACCGGACTCTACGGAAGCCGGTGGCGCCGAATCCGACATTGATCCCTCTAACCAAGACTATTTATCGGCACCCGCTTCGGATTCTGTACCTCACGAAAGTCCCAATCATGCTGGCGCTTCCGATAAAAAGTGGCCTGGATGGCCCGGAGACTGCGTCTTCCGGCTTATTGTACCGGTCGTTAAAGTCGGCAGCATTATTGGGCGCAGGGGCGATCTTATCAAGAAGATCTGTGAGGAAACTAGGGCTAGAATTCGTGTTCTTGATGGTGCTGTTGGCACTCCTGATCGCGTCGTGAGTGTTTTTTTTTATTTTTAATTAATTAATTTATTTAGCAATGGAAATGGCTTTGTTACTCATGGTTACGTAGGGATGACGAGTTGAATCTCTATCTTTATATTGGTTTAAACTGGATTAAATGATTCATAGTCTAAAAATATCTCCATTTTCGTGCCCTCAGGTTTCCAGAAAACCAAGGCCGTTCTTCCATCTTTGGCTGGTTCCATCAAATACTAGTTAGTCATAAAAACTATTTCCCACTTCTTTCACAGCTGCCGTCCGATAATAGGTCAAGTAGTTGTATAAATGGAGCTTCTTGTGGTCGAAAGGAACATATATTATAGAATTGAGGTCTGTTCCATGGTGGCGCAATGCTCTTATCACTTAGAACTAGAGTTAGATTTGGGAGGCAAAAGGGTTTTTTTTTTTTACTATATAATTATTTGTTAGGCTTAGTTATTATGGAGTTTTTTCCCCAAATAGTTTAGGTTTTATTTGAGCTCTTTTTGTGGGTTCTTTTTCTTTGCATGCCCTTGTATTTTCTTTAAAATTTTCAAGGAAACCCCGGTTTTCAATTGAAAAAAAACAAAGACTTGAGGCAAAATATCACAGCGATCTGTCTATTAACTTCCATAATCTTGTTGTTTTTGGATAGGCTGCTTTTACATTATTTTGTTTACTGTTTATTTAAGATTATGCACCTTATACTTAGAGGAGTGCCCAAGTGATTGTGACTAGGTTCATTGAAGAACTGTAATATATATAGATCAGAGGTATAAACTTTCCTTTTAGAAGGTTGTTGCAATACCATTTTTGGATGCTTCACTTTGATTTGAAAGAAAATTTTGGATGCATTCTTGTACAATTTCTTTTGAGTAGGAGATCTTGTTTTATCTTGTTCGTTCAGCTTTTAATGTTTAGTTTTTACTTCAGGTGCTAATTTCAGGAAAGGAAGAGCCTGAGGCACCCCTTTCCCCTGCAATGGATGCAGTTTTAAGAATCTTTAAACGTGTGTCTGGATTTTCTGAGAATGAAGATGAGGCTAAAGCTTCATTCTGTTCGGTCCGGTTACTGGTGGCATCAACTCAAGCAATCAATCTAATTGGAAAGCAGGGTTCATTAATCAAATCCATACAGGAGAGTACAGGGGCTTCTGTGAGAGTTTTATCAGGAGGTATGCTTTCGTTCTCTGTATTTCAATTCACTTGTCAGGCTCTTTTACTGATCGGTTTTGGACTTAGCTACATGAAATCTACCTGATAGCTAAATTTTAGAGACATCAGGAAGGCTATTGTTGAGGGAAAGACTATTAAGCACACACTTAAAAACCTCACATTAAGGGAAGGATTATTTAAAAGAATAATAATGTCAGAAACCTGGAGATCAATAGAAAACTCCCATCATTGTGAGAAATGCAAATGGGTCTAAGAATTGATCCACCTTACTAAGCTTCGGTTTGGCAGTGTTTACGATAAGGTACATTGTTGTTATTCTTTAACCCTTTTGATCTCACTCCAATTTTATATTGATCAACTATTCGACCAGAGGGGTGATTCCGTTAGGAAAATTCGATCAAACGTTTGTAAGAAGTGGAAATTTGGGATGCCTCATTGCAAGATTGCAACCTCACAAGTTGTTCTATATTAGAGTTTAGAATTGGATAGTTCGTAGAGACAGAATACTGAAAGACCAGTGTTAGGCCACCCTTCCACATAAACAGTTAGACTCCAATTGTGGCCAAGTTAGGAGTTCAAGTTTAAAGTAAGTACTCATCTCATTGACTATGAGTCCTTGAAAATACTAATATCCAAGGGGATCATTTGTGTCGATGGGGATTACAACTTTACCTTTTAAGGTTCCTTTTGGTTAAAAGAAACCCCTTCTCATGGTTGTCTGATTGAGCTTCCTTACTGGTAAGAGCTTACCATGTTTCTCCCCAAAGGAGAGGGGTCCTTGAGGTCAAAACCCCCTTTATTCATTAGCCCATTGAAAAGCCTTCCAGTGAAGGCATCTATCGTGTTATTTTGACATGTTTGATTTGAAGGATTAGAGTTGGTAATTAAAGTGAAGAAGAATTTCCATGATCTATCGTAGGTGTCTTTTGTTCAAATCAAACAACAAAACAAAATCAATTGGGTAGAAACTACCGGGTGAAAGGGAGTATTCGTACAAGTCTATTGTCAACTAGCGAAAGACCAATGGCAGTTGAATCTATTGAGAACAAAGTGTAGCTCTGATACCAACTGTCAAGCTTATTGGTCGTTAGGGGAATGGATTCACAATTTGTTCTCAATAAAATTGTGAACCCATTCCCCTAACGGCCAATAAACTTGAGAAAAATTTCAGTCCCAATTCATCCCTAGGAATGTTTCTCAGTAGTCAGTTCTATTCCGATATGCTAGTGATATTTCCATGAAGACTACAATGTAGTACTTAGGCTGCCATGTACCGTTTCTATGATGGGCAACCATAAGTCATTCCCCAGTTAAGAGAATCATAATGCTCGAATCTATTTTAACGTTGTTAACCAAGTTTTCGTCATTGGAAATAGCAGACAGGTAGTTTATGTGGGGTTAATTGTTGGAGCAGGATCGGGTTCTTTCTTTTTTCTTTTTTGATTGAAAGTGGAAATAGAACTACATTGCTCAGCTTAGTATCATGGTTGCTCACATGCCTTTCCCTAGCTGCAAGCTACTTGTCTCATTACTCATTGCGCTTGGTGACGGTCACCCCCATAACATTGATCTTTGGAATGATTTAACTTGCACATACACTTCGTCACTTACAACCGTTGTCTTCAACAATACGTAGATGTTGATGTTCAAATATTTGACCATTTGTGTCGATGTTTCCTTGACTAGTTGAGCTATGCTTAGATCGATGGTAGATAGTAGTCTTGTCACCACATTTGAACTTGTTGGTATAGGTGGCATGTCAACCTATTGTGAGCTAACCTTAGAGAAGCTTACTTAATCTCTGATTCACTAACATCTTTCTGTTGCTGATACATGGTAAAGATGACCTAAAACTAAAAGTACATGACAATAGCTAGATAAATTAAGTGTTATTTCTTTCCTCAATTATGCTGTGATAAATCAAAGTAACCAAGTATGATGACTATTAACTTCAAGCCTTGAGATTCAGTCGACAGCTGCAAGCAAATACATTTCCTACTATAGTCATTCGTCTATGAGTACTCTCTGAATGTTCCCTTACTCATCTACATTCGATGCTTGCAGATGAGATGCCATTCTATGCTGGTCCGGATGAGAGAATGGTGGAACTTGCAGGGAGAAACCTTAAAGGTTCTCAAGGCTCTAGAGGCAGTGGTGGGCCACCTAAGGAAGTTTTTAGTTGATCATAGTGTTCTTCCTCTGTTTGAAAAGAGTGTAAGTTTTTTCCTCTTAGGTTATGTTCAACCTCCTCTTTTACCATACTTTAGGACTGCCAATGAATTGTTGCAACTTTTTTTTAATAGTTCAATACACCTGCCTCACAAGATCGCCAAACGGATGCCTGGGCTGACAAGTCCTCACTTCTTTCTGCATCTCAAAGTGTAATTTCCACCGAGTATCCTCCATCTTCAAAAAGAGAATCTCTGTTTCTTGACCGAGAAACTCATCTTGATTCTCATATTTCATCCTCTGGTATTTCTCTCTATGGACCAGATCGAGTGCTTCCTGCAATTCGATCATCAGGTGTTGGTCGCTCCGGTGTGCCTATTGTCACTCAGGTTGGTATATGTAGTTATTGGTTGAAGGAAATGGTCTATGTTGACTCAGGCCTTGTGAGGCTGCAAACTATACCATCATTGCATGTCCATTTTTCTTTTTCCAGTCTTGATGTCCAGACAAGCTGGAAGCTTGTTAGCTTTACATGTCCATCGTGCCTTGGAAACACTATGTCCAAAATGTTTGGCATATTGCATACAAATATTATTTAGCATAATGCTGAATGGAGGCCGTGGGGTCACACAGTAGTTACCGAGTTCGTCTTTATCATCTTTGACCGAGTCACCTCTTTGTGGTTCCTGTCAGGTCACGCAGACAATGCAAATCCCGTTATCTTATGCTGAGGACATCATTGGGGTTGGAGGAGCAAATATCGCATTCATCCGTCGCAATAGTGGTGCAATCTTAACCATACAAGAGAGCAGGGGATTACCGGATGAAATCACTGTGGAAATAAAAGGCACTTCCTCACAAGTTCAGATGGCTCAACAATTAATTCAGGTAATATTTAATTTCCCCGTTTGACTATTAACTTTCTGGTTATTGCTTGTTACGGTCCATAGCGTTGCGCTGCGATACTCTGTTTCCCATGTCATGCAAAAAGTTACTTATATTTCATTGTACAACTGTAACGGCCCAGATCCACCGCTAGCAGATATTGTCATCTTTGGGCTTTCCCTTTCGGGCTTCCCCTCAAGGCTTTAAAACGCGTCTGCTAGGGAAAGGTTTCCACTCTCTTATAAGGGTGTTTTGTTCT

mRNA sequence

TTTAAAATTTTATTATTTCAATAATTTACAAAAATAAAAAGAAAAAAAGAAAAAAGAAAAAAGAAAAAAAAAACCTGCATTTCCTTACTTTCTTCCTCTCTTCCTTCGTCCTCTTTAAACCTCTGAAAATCTTAACCCTAACTTCTTCCTCCTTCTTCATCCTTCTTCATCTTCCTCCATGGCCACCAACACAACTACAGAGAATGGCTCCACTGATGCCGACGCCCTCAATTCAAGCCCCCAACTTGCCTTTGAAGCTGCTCCCGAACCGGACTCTACGGAAGCCGGTGGCGCCGAATCCGACATTGATCCCTCTAACCAAGACTATTTATCGGCACCCGCTTCGGATTCTGTACCTCACGAAAGTCCCAATCATGCTGGCGCTTCCGATAAAAAGTGGCCTGGATGGCCCGGAGACTGCGTCTTCCGGCTTATTGTACCGGTCGTTAAAGTCGGCAGCATTATTGGGCGCAGGGGCGATCTTATCAAGAAGATCTGTGAGGAAACTAGGGCTAGAATTCGTGTTCTTGATGGTGCTGTTGGCACTCCTGATCGCGTCGTGCTAATTTCAGGAAAGGAAGAGCCTGAGGCACCCCTTTCCCCTGCAATGGATGCAGTTTTAAGAATCTTTAAACGTGTGTCTGGATTTTCTGAGAATGAAGATGAGGCTAAAGCTTCATTCTGTTCGGTCCGGTTACTGGTGGCATCAACTCAAGCAATCAATCTAATTGGAAAGCAGGGTTCATTAATCAAATCCATACAGGAGAGTACAGGGGCTTCTGTGAGAGTTTTATCAGGAGATGAGATGCCATTCTATGCTGGTCCGGATGAGAGAATGGTGGAACTTGCAGGGAGAAACCTTAAAGGTTCTCAAGGCTCTAGAGGCAGTGGTGGGCCACCTAAGGAAGTTTTTAGTTGATCATAGTGTTCTTCCTCTGTTTGAAAAGAGTTTCAATACACCTGCCTCACAAGATCGCCAAACGGATGCCTGGGCTGACAAGTCCTCACTTCTTTCTGCATCTCAAAGTGTAATTTCCACCGAGTATCCTCCATCTTCAAAAAGAGAATCTCTGTTTCTTGACCGAGAAACTCATCTTGATTCTCATATTTCATCCTCTGGTATTTCTCTCTATGGACCAGATCGAGTGCTTCCTGCAATTCGATCATCAGGTGTTGGTCGCTCCGGTGTGCCTATTGTCACTCAGGTCACGCAGACAATGCAAATCCCGTTATCTTATGCTGAGGACATCATTGGGGTTGGAGGAGCAAATATCGCATTCATCCGTCGCAATAGTGGTGCAATCTTAACCATACAAGAGAGCAGGGGATTACCGGATGAAATCACTGTGGAAATAAAAGGCACTTCCTCACAAGTTCAGATGGCTCAACAATTAATTCAGGTAATATTTAATTTCCCCGTTTGACTATTAACTTTCTGGTTATTGCTTGTTACGGTCCATAGCGTTGCGCTGCGATACTCTGTTTCCCATGTCATGCAAAAAGTTACTTATATTTCATTGTACAACTGTAACGGCCCAGATCCACCGCTAGCAGATATTGTCATCTTTGGGCTTTCCCTTTCGGGCTTCCCCTCAAGGCTTTAAAACGCGTCTGCTAGGGAAAGGTTTCCACTCTCTTATAAGGGTGTTTTGTTCT

Coding sequence (CDS)

ATGGCCACCAACACAACTACAGAGAATGGCTCCACTGATGCCGACGCCCTCAATTCAAGCCCCCAACTTGCCTTTGAAGCTGCTCCCGAACCGGACTCTACGGAAGCCGGTGGCGCCGAATCCGACATTGATCCCTCTAACCAAGACTATTTATCGGCACCCGCTTCGGATTCTGTACCTCACGAAAGTCCCAATCATGCTGGCGCTTCCGATAAAAAGTGGCCTGGATGGCCCGGAGACTGCGTCTTCCGGCTTATTGTACCGGTCGTTAAAGTCGGCAGCATTATTGGGCGCAGGGGCGATCTTATCAAGAAGATCTGTGAGGAAACTAGGGCTAGAATTCGTGTTCTTGATGGTGCTGTTGGCACTCCTGATCGCGTCGTGCTAATTTCAGGAAAGGAAGAGCCTGAGGCACCCCTTTCCCCTGCAATGGATGCAGTTTTAAGAATCTTTAAACGTGTGTCTGGATTTTCTGAGAATGAAGATGAGGCTAAAGCTTCATTCTGTTCGGTCCGGTTACTGGTGGCATCAACTCAAGCAATCAATCTAATTGGAAAGCAGGGTTCATTAATCAAATCCATACAGGAGAGTACAGGGGCTTCTGTGAGAGTTTTATCAGGAGATGAGATGCCATTCTATGCTGGTCCGGATGAGAGAATGGTGGAACTTGCAGGGAGAAACCTTAAAGGTTCTCAAGGCTCTAGAGGCAGTGGTGGGCCACCTAAGGAAGTTTTTAGTTGA

Protein sequence

MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASDSVPHESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGAVGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQAINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLKGSQGSRGSGGPPKEVFS

Homology

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BLAST of Carg24193 vs. NCBI nr
Match: KAG7020933.1 (RNA-binding KH domain-containing protein PEPPER [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 480.3 bits (1235), Expect = 9.7e-132
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0


Query: 1   MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASDSVP 60
           MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASDSVP
Sbjct: 1   MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASDSVP 60

Query: 61  HESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120
           HESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA
Sbjct: 61  HESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120

Query: 121 VGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQA 180
           VGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQA
Sbjct: 121 VGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQA 180

Query: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLKGSQGSRGSGGP 240
           INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLKGSQGSRGSGGP
Sbjct: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLKGSQGSRGSGGP 240

Query: 241 PKEVFS 247
           PKEVFS
Sbjct: 241 PKEVFS 246

[Close]

BLAST of Carg24193 vs. NCBI nr
Match: KAG6586109.1 (RNA-binding KH domain-containing protein PEPPER, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 440.7 bits (1132), Expect = 8.6e-120
Identity = 226/229 (98.69%), Postives = 226/229 (98.69%), Query Frame = 0


Query: 1   MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASDSVP 60
           MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASDSVP
Sbjct: 1   MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASDSVP 60

Query: 61  HESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120
           HESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA
Sbjct: 61  HESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120

Query: 121 VGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQA 180
           VGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQA
Sbjct: 121 VGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQA 180

Query: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLK 230
           INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVEL G  LK
Sbjct: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELQGETLK 229

[Close]

BLAST of Carg24193 vs. NCBI nr
Match: XP_022965514.1 (RNA-binding KH domain-containing protein PEPPER-like [Cucurbita maxima])

HSP 1 Score: 432.2 bits (1110), Expect = 3.0e-117
Identity = 222/229 (96.94%), Postives = 224/229 (97.82%), Query Frame = 0


Query: 1   MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASDSVP 60
           MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQ YLSAPASDSVP
Sbjct: 1   MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQVYLSAPASDSVP 60

Query: 61  HESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120
           HESPNHA ASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA
Sbjct: 61  HESPNHAVASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120

Query: 121 VGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQA 180
           VGTPDRVVLISGKEEPEAPLSPAMDAVLR+FKRVSGFSENEDEAKASFCSVRLLVASTQA
Sbjct: 121 VGTPDRVVLISGKEEPEAPLSPAMDAVLRVFKRVSGFSENEDEAKASFCSVRLLVASTQA 180

Query: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLK 230
           INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERM+EL G  LK
Sbjct: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMLELQGETLK 229

[Close]

BLAST of Carg24193 vs. NCBI nr
Match: XP_023538336.1 (RNA-binding KH domain-containing protein PEPPER-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 429.5 bits (1103), Expect = 2.0e-116
Identity = 221/229 (96.51%), Postives = 222/229 (96.94%), Query Frame = 0


Query: 1   MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASDSVP 60
           MATN TTENGSTDADALNSSPQLA EAA EPDSTEAGGAESDIDPSNQDYLSAPASD VP
Sbjct: 1   MATNATTENGSTDADALNSSPQLACEAAAEPDSTEAGGAESDIDPSNQDYLSAPASDYVP 60

Query: 61  HESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120
           HESPNHAGASDKKWPGWPGDCVFR+IVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA
Sbjct: 61  HESPNHAGASDKKWPGWPGDCVFRIIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120

Query: 121 VGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQA 180
           VGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQA
Sbjct: 121 VGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQA 180

Query: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLK 230
           INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVEL G  LK
Sbjct: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELQGETLK 229

[Close]

BLAST of Carg24193 vs. NCBI nr
Match: XP_022938096.1 (RNA-binding KH domain-containing protein PEPPER-like [Cucurbita moschata])

HSP 1 Score: 429.5 bits (1103), Expect = 2.0e-116
Identity = 220/229 (96.07%), Postives = 222/229 (96.94%), Query Frame = 0


Query: 1   MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASDSVP 60
           MATNTTTENGSTDADALNSS QLAFEAAPEPDSTEA GAES IDPSNQDYLSAPASDS+P
Sbjct: 1   MATNTTTENGSTDADALNSSAQLAFEAAPEPDSTEASGAESGIDPSNQDYLSAPASDSLP 60

Query: 61  HESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120
           HESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA
Sbjct: 61  HESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120

Query: 121 VGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQA 180
           VGTPDRVVLISGKEEPEAP SPAMDAVLR+FKRVSGFSENEDEAKASFCSVRLLVASTQA
Sbjct: 121 VGTPDRVVLISGKEEPEAPFSPAMDAVLRVFKRVSGFSENEDEAKASFCSVRLLVASTQA 180

Query: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLK 230
           INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVEL G  LK
Sbjct: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELQGETLK 229

[Close]

BLAST of Carg24193 vs. ExPASy Swiss-Prot
Match: Q9SZH4 (RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana OX=3702 GN=PEP PE=1 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.5e-63
Identity = 120/170 (70.59%), Postives = 145/170 (85.29%), Query Frame = 0


Query: 64  PNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGAVGT 123
           P+   +++++WPGWPGDCVFR+IVPV KVG+IIGR+GD IKK+CEETRARI+VLDG V T
Sbjct: 57  PDTNDSAEERWPGWPGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNT 116

Query: 124 PDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDE----AKASFCSVRLLVASTQ 183
           PDR+VLISGKEEPEA +SPAMDAVLR+F+RVSG  +N+D+    A + F SVRLLVASTQ
Sbjct: 117 PDRIVLISGKEEPEAYMSPAMDAVLRVFRRVSGLPDNDDDDVQNAGSVFSSVRLLVASTQ 176

Query: 184 AINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLK 230
           AINLIGKQGSLIKSI E++GASVR+LS +E PFYA  DER+V+L G  LK
Sbjct: 177 AINLIGKQGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDLQGEALK 226

[Close]

BLAST of Carg24193 vs. ExPASy Swiss-Prot
Match: Q9SR13 (Flowering locus K homology domain OS=Arabidopsis thaliana OX=3702 GN=FLK PE=1 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.8e-41
Identity = 101/237 (42.62%), Postives = 138/237 (58.23%), Query Frame = 0


Query: 4   NTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASD------ 63
           N   ++ S D        Q  F+   E        A+ D+   N D +     D      
Sbjct: 98  NEDVQDHSQDDLQYQPQNQEQFQLQDEAHDQAQYQAQGDVQDHNGDEVQDKVEDEEGIPE 157

Query: 64  -------SVPHESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEET 123
                  S P E     G  +K+WPGWPG+ VFR++VP  KVGSIIGR+GD+IKKI EET
Sbjct: 158 HLESLQKSEPEEDAT-VGGEEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEET 217

Query: 124 RARIRVLDGAVGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKR-VSGFSENEDEA-KASF 183
           RARI++LDG  GT +R V++SGKEEPE+ L P+MD +LR+  R V G      +A   S 
Sbjct: 218 RARIKILDGPPGTTERAVMVSGKEEPESSLPPSMDGLLRVHMRIVDGLDGEASQAPPPSK 277

Query: 184 CSVRLLVASTQAINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAG 226
            S RLLV ++QA +LIGKQG  +K+IQE++   VRVL  +++P +A  D+R+VE+ G
Sbjct: 278 VSTRLLVPASQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVVG 333

[Close]

BLAST of Carg24193 vs. ExPASy Swiss-Prot
Match: F4KDN0 (KH domain-containing protein HEN4 OS=Arabidopsis thaliana OX=3702 GN=HEN4 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.9e-14
Identity = 40/148 (27.03%), Postives = 83/148 (56.08%), Query Frame = 0


Query: 80  DCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGAVGTPDRVVLISGKEEPEAP 139
           D VF+++      G +IG  G +++ +  ET A I V +      +R++ ++  E PE  
Sbjct: 451 DVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQ 510

Query: 140 LSPAMDAVLRIFKRVSGFSENE--DEAKASFCSVRLLVASTQAINLIGKQGSLIKSIQES 199
            SPA  A++ IF R+   + N+  D    S  + RL+V ++Q   ++GK G ++  ++++
Sbjct: 511 SSPAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRKT 570

Query: 200 TGASVRVLSGDEMPFYAGPDERMVELAG 226
           TGA++++L  ++ P     ++++V++ G
Sbjct: 571 TGAAIQILKVEQNPKCISENDQVVQITG 598

[Close]

BLAST of Carg24193 vs. ExPASy Swiss-Prot
Match: Q5E9A3 (Poly(rC)-binding protein 1 OS=Bos taurus OX=9913 GN=PCBP1 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.5e-13
Identity = 51/143 (35.66%), Postives = 86/143 (60.14%), Query Frame = 0


Query: 84  RLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGAVGTPDRVVLISGKEEPEAPLSPA 143
           RL++   +VGSIIG++G+ +K+I EE+ ARI + +G    P+R++ ++G   P   +  A
Sbjct: 17  RLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTG---PTNAIFKA 76

Query: 144 MDAVL-RIFKRVSGFSENEDEAKASFCSVRLLVASTQAINLIGKQGSLIKSIQESTGASV 203
              ++ ++ + ++    N   A     ++RL+V +TQ  +LIGK G  IK I+ESTGA V
Sbjct: 77  FAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQV 136

Query: 204 RVLSGDEMPFYAGPDERMVELAG 226
           +V +GD +P      ER + +AG
Sbjct: 137 QV-AGDMLP---NSTERAITIAG 150

[Close]

BLAST of Carg24193 vs. ExPASy Swiss-Prot
Match: Q15365 (Poly(rC)-binding protein 1 OS=Homo sapiens OX=9606 GN=PCBP1 PE=1 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 1.5e-13
Identity = 51/143 (35.66%), Postives = 86/143 (60.14%), Query Frame = 0


Query: 84  RLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGAVGTPDRVVLISGKEEPEAPLSPA 143
           RL++   +VGSIIG++G+ +K+I EE+ ARI + +G    P+R++ ++G   P   +  A
Sbjct: 17  RLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTG---PTNAIFKA 76

Query: 144 MDAVL-RIFKRVSGFSENEDEAKASFCSVRLLVASTQAINLIGKQGSLIKSIQESTGASV 203
              ++ ++ + ++    N   A     ++RL+V +TQ  +LIGK G  IK I+ESTGA V
Sbjct: 77  FAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQV 136

Query: 204 RVLSGDEMPFYAGPDERMVELAG 226
           +V +GD +P      ER + +AG
Sbjct: 137 QV-AGDMLP---NSTERAITIAG 150

[Close]

BLAST of Carg24193 vs. ExPASy TrEMBL
Match: A0A6J1HR76 (RNA-binding KH domain-containing protein PEPPER-like OS=Cucurbita maxima OX=3661 GN=LOC111465395 PE=4 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 1.5e-117
Identity = 222/229 (96.94%), Postives = 224/229 (97.82%), Query Frame = 0


Query: 1   MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASDSVP 60
           MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQ YLSAPASDSVP
Sbjct: 1   MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQVYLSAPASDSVP 60

Query: 61  HESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120
           HESPNHA ASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA
Sbjct: 61  HESPNHAVASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120

Query: 121 VGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQA 180
           VGTPDRVVLISGKEEPEAPLSPAMDAVLR+FKRVSGFSENEDEAKASFCSVRLLVASTQA
Sbjct: 121 VGTPDRVVLISGKEEPEAPLSPAMDAVLRVFKRVSGFSENEDEAKASFCSVRLLVASTQA 180

Query: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLK 230
           INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERM+EL G  LK
Sbjct: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMLELQGETLK 229

[Close]

BLAST of Carg24193 vs. ExPASy TrEMBL
Match: A0A6J1FC72 (RNA-binding KH domain-containing protein PEPPER-like OS=Cucurbita moschata OX=3662 GN=LOC111444285 PE=4 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 9.6e-117
Identity = 220/229 (96.07%), Postives = 222/229 (96.94%), Query Frame = 0


Query: 1   MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASDSVP 60
           MATNTTTENGSTDADALNSS QLAFEAAPEPDSTEA GAES IDPSNQDYLSAPASDS+P
Sbjct: 1   MATNTTTENGSTDADALNSSAQLAFEAAPEPDSTEASGAESGIDPSNQDYLSAPASDSLP 60

Query: 61  HESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120
           HESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA
Sbjct: 61  HESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120

Query: 121 VGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQA 180
           VGTPDRVVLISGKEEPEAP SPAMDAVLR+FKRVSGFSENEDEAKASFCSVRLLVASTQA
Sbjct: 121 VGTPDRVVLISGKEEPEAPFSPAMDAVLRVFKRVSGFSENEDEAKASFCSVRLLVASTQA 180

Query: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLK 230
           INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVEL G  LK
Sbjct: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELQGETLK 229

[Close]

BLAST of Carg24193 vs. ExPASy TrEMBL
Match: A0A6J1K7W7 (RNA-binding KH domain-containing protein PEPPER-like OS=Cucurbita maxima OX=3661 GN=LOC111491969 PE=4 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 3.5e-103
Identity = 200/233 (85.84%), Postives = 213/233 (91.42%), Query Frame = 0


Query: 1   MATNTTTENGSTDADALNSSPQ---LAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASD 60
           MATNT T+NGSTDA+ALN +P+   LA  AA EPDS EAGGAESD+DPSNQDYLSAPASD
Sbjct: 1   MATNTATDNGSTDANALNFNPESSPLASVAAAEPDSMEAGGAESDLDPSNQDYLSAPASD 60

Query: 61  SVPH-ESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRV 120
           S  H ESPNH  ASDKKWPGWPGDCVFRLIVPVVKVGSIIGR+GDLIKK+CEETRARIRV
Sbjct: 61  SADHDESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV 120

Query: 121 LDGAVGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVA 180
           LDGAVGTPDRVVLISGKE+PEAPLSPAMDAV+R+FKRV  FSENEDEAK SFCS+RLLVA
Sbjct: 121 LDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTSFCSIRLLVA 180

Query: 181 STQAINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLK 230
           STQAINLIGKQGSLIKSIQESTGAS+RVLSGDEMPFYAG DERMVEL G +LK
Sbjct: 181 STQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGADERMVELQGESLK 233

[Close]

BLAST of Carg24193 vs. ExPASy TrEMBL
Match: A0A6J1EV22 (RNA-binding KH domain-containing protein PEPPER-like OS=Cucurbita moschata OX=3662 GN=LOC111436202 PE=4 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 3.5e-103
Identity = 200/233 (85.84%), Postives = 213/233 (91.42%), Query Frame = 0


Query: 1   MATNTTTENGSTDADALNSSPQ---LAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASD 60
           MATNT T+NGSTDA+ALN +P+   LA  AA EPDS EAGGAESD+DPSNQDYLSAPASD
Sbjct: 1   MATNTATDNGSTDANALNFNPESSPLASVAAAEPDSMEAGGAESDLDPSNQDYLSAPASD 60

Query: 61  SVPH-ESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRV 120
           S  H ESPNH  ASDKKWPGWPGDCVFRLIVPVVKVGSIIGR+GDLIKK+CEETRARIRV
Sbjct: 61  SADHDESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV 120

Query: 121 LDGAVGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVA 180
           LDGAVGTPDRVVLISGKE+PEAPLSPAMDAV+R+FKRV  FSENEDEAK SFCS+RLLVA
Sbjct: 121 LDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTSFCSIRLLVA 180

Query: 181 STQAINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLK 230
           STQAINLIGKQGSLIKSIQESTGAS+RVLSGDEMPFYAG DERMVEL G +LK
Sbjct: 181 STQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGADERMVELQGESLK 233

[Close]

BLAST of Carg24193 vs. ExPASy TrEMBL
Match: A0A6J1D9V1 (RNA-binding KH domain-containing protein PEPPER OS=Momordica charantia OX=3673 GN=LOC111018213 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 1.5e-101
Identity = 196/232 (84.48%), Postives = 209/232 (90.09%), Query Frame = 0


Query: 1   MATNTTTENGSTDADALNSSPQ---LAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASD 60
           MATN   ENGSTDA A+NS+PQ   L   AA E DSTEAGGAESD+DPSN DYLS PASD
Sbjct: 1   MATNKIAENGSTDASAINSNPQSSTLDSVAAAELDSTEAGGAESDLDPSNSDYLSVPASD 60

Query: 61  SVPHESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVL 120
           S   E+ NH G+SDKKWPGWPGDCVFRLIVPVVKVGSIIGR+GDLIKK+CEET+ARIRVL
Sbjct: 61  SGAQEASNHTGSSDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETKARIRVL 120

Query: 121 DGAVGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVAS 180
           DGAVGTPDRVVLISGKEEPEAPLSPAMDAV+R+FKRVSGFSENED+ KASFCS+RLLVAS
Sbjct: 121 DGAVGTPDRVVLISGKEEPEAPLSPAMDAVIRVFKRVSGFSENEDDTKASFCSIRLLVAS 180

Query: 181 TQAINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLK 230
           TQAINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAG DERMVEL G +LK
Sbjct: 181 TQAINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGADERMVELQGESLK 232

[Close]

BLAST of Carg24193 vs. TAIR 10
Match: AT4G26000.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 244.2 bits (622), Expect = 1.1e-64
Identity = 120/170 (70.59%), Postives = 145/170 (85.29%), Query Frame = 0


Query: 64  PNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGAVGT 123
           P+   +++++WPGWPGDCVFR+IVPV KVG+IIGR+GD IKK+CEETRARI+VLDG V T
Sbjct: 57  PDTNDSAEERWPGWPGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNT 116

Query: 124 PDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDE----AKASFCSVRLLVASTQ 183
           PDR+VLISGKEEPEA +SPAMDAVLR+F+RVSG  +N+D+    A + F SVRLLVASTQ
Sbjct: 117 PDRIVLISGKEEPEAYMSPAMDAVLRVFRRVSGLPDNDDDDVQNAGSVFSSVRLLVASTQ 176

Query: 184 AINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLK 230
           AINLIGKQGSLIKSI E++GASVR+LS +E PFYA  DER+V+L G  LK
Sbjct: 177 AINLIGKQGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDLQGEALK 226

[Close]

BLAST of Carg24193 vs. TAIR 10
Match: AT3G04610.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 170.2 bits (430), Expect = 2.0e-42
Identity = 101/237 (42.62%), Postives = 138/237 (58.23%), Query Frame = 0


Query: 4   NTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASD------ 63
           N   ++ S D        Q  F+   E        A+ D+   N D +     D      
Sbjct: 98  NEDVQDHSQDDLQYQPQNQEQFQLQDEAHDQAQYQAQGDVQDHNGDEVQDKVEDEEGIPE 157

Query: 64  -------SVPHESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEET 123
                  S P E     G  +K+WPGWPG+ VFR++VP  KVGSIIGR+GD+IKKI EET
Sbjct: 158 HLESLQKSEPEEDAT-VGGEEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEET 217

Query: 124 RARIRVLDGAVGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKR-VSGFSENEDEA-KASF 183
           RARI++LDG  GT +R V++SGKEEPE+ L P+MD +LR+  R V G      +A   S 
Sbjct: 218 RARIKILDGPPGTTERAVMVSGKEEPESSLPPSMDGLLRVHMRIVDGLDGEASQAPPPSK 277

Query: 184 CSVRLLVASTQAINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAG 226
            S RLLV ++QA +LIGKQG  +K+IQE++   VRVL  +++P +A  D+R+VE+ G
Sbjct: 278 VSTRLLVPASQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVVG 333

[Close]

BLAST of Carg24193 vs. TAIR 10
Match: AT1G51580.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 87.0 bits (214), Expect = 2.2e-17
Identity = 62/201 (30.85%), Postives = 98/201 (48.76%), Query Frame = 0


Query: 60  PHESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDG 119
           P+  P   G  ++  P    +  FRL+ P  KVGS+IG+ G +++ +  E+ A I+V D 
Sbjct: 257 PNPMPEDVGPFNR--PVVEEEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDP 316

Query: 120 AVGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQ 179
              + +R+++IS +E  E   S A D V+R+  R+         A  +    RLLV S  
Sbjct: 317 THDSEERIIVISARENLERRHSLAQDGVMRVHNRIVEIGFEPSAAVVA----RLLVHSPY 376

Query: 180 AINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLKGSQGS----- 239
              L+GK G LI  ++ +TGAS+RV + D+   Y    + +V++ G NLK  Q +     
Sbjct: 377 IGRLLGKGGHLISEMRRATGASIRVFAKDQATKYESQHDEIVQVIG-NLKTVQDALFQIL 436

Query: 240 --------------RGSGGPP 242
                         +G GGPP
Sbjct: 437 CRLREAMFPGRLPFQGMGGPP 450

[Close]

BLAST of Carg24193 vs. TAIR 10
Match: AT5G15270.2 (RNA-binding KH domain-containing protein )

HSP 1 Score: 85.9 bits (211), Expect = 5.0e-17
Identity = 50/142 (35.21%), Postives = 84/142 (59.15%), Query Frame = 0


Query: 84  RLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGAVGTPDRVVLISGKEEPEAPLSPA 143
           RL+ PV  + S+IG+ G LI ++ +ETRA I+V        D ++ IS +E  E   SP 
Sbjct: 287 RLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDAYSPT 346

Query: 144 MDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQAINLIGKQGSLIKSIQESTGASVR 203
           ++AV+R+  + S   E  D    SF + RLLV S++   ++GK G++I  ++  T A++R
Sbjct: 347 IEAVMRLQPKCSDKVE-RDSGLVSF-TTRLLVPSSRIGCILGKGGAIITEMRRMTKANIR 406

Query: 204 VLSGDEMPFYAGPDERMVELAG 226
           +L  + +P  A  D+ MV+++G
Sbjct: 407 ILGKENLPKVASDDDEMVQISG 426

[Close]

BLAST of Carg24193 vs. TAIR 10
Match: AT5G15270.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 85.9 bits (211), Expect = 5.0e-17
Identity = 50/142 (35.21%), Postives = 84/142 (59.15%), Query Frame = 0


Query: 84  RLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGAVGTPDRVVLISGKEEPEAPLSPA 143
           RL+ PV  + S+IG+ G LI ++ +ETRA I+V        D ++ IS +E  E   SP 
Sbjct: 287 RLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDAYSPT 346

Query: 144 MDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQAINLIGKQGSLIKSIQESTGASVR 203
           ++AV+R+  + S   E  D    SF + RLLV S++   ++GK G++I  ++  T A++R
Sbjct: 347 IEAVMRLQPKCSDKVE-RDSGLVSF-TTRLLVPSSRIGCILGKGGAIITEMRRMTKANIR 406

Query: 204 VLSGDEMPFYAGPDERMVELAG 226
           +L  + +P  A  D+ MV+++G
Sbjct: 407 ILGKENLPKVASDDDEMVQISG 426

The following BLAST results are available for this feature:

BLAST of Carg24193 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020933.1	9.7e-132	100.00	RNA-binding KH domain-containing protein PEPPER [Cucurbita argyrosperma subsp. a...	[more]
KAG6586109.1	8.6e-120	98.69	RNA-binding KH domain-containing protein PEPPER, partial [Cucurbita argyrosperma...	[more]
XP_022965514.1	3.0e-117	96.94	RNA-binding KH domain-containing protein PEPPER-like [Cucurbita maxima]	[more]
XP_023538336.1	2.0e-116	96.51	RNA-binding KH domain-containing protein PEPPER-like [Cucurbita pepo subsp. pepo...	[more]
XP_022938096.1	2.0e-116	96.07	RNA-binding KH domain-containing protein PEPPER-like [Cucurbita moschata]	[more]

BLAST of Carg24193 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZH4	1.5e-63	70.59	RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9SR13	2.8e-41	42.62	Flowering locus K homology domain OS=Arabidopsis thaliana OX=3702 GN=FLK PE=1 SV...	[more]
F4KDN0	3.9e-14	27.03	KH domain-containing protein HEN4 OS=Arabidopsis thaliana OX=3702 GN=HEN4 PE=1 S...	[more]
Q5E9A3	1.5e-13	35.66	Poly(rC)-binding protein 1 OS=Bos taurus OX=9913 GN=PCBP1 PE=2 SV=1	[more]
Q15365	1.5e-13	35.66	Poly(rC)-binding protein 1 OS=Homo sapiens OX=9606 GN=PCBP1 PE=1 SV=2	[more]

BLAST of Carg24193 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HR76	1.5e-117	96.94	RNA-binding KH domain-containing protein PEPPER-like OS=Cucurbita maxima OX=3661...	[more]
A0A6J1FC72	9.6e-117	96.07	RNA-binding KH domain-containing protein PEPPER-like OS=Cucurbita moschata OX=36...	[more]
A0A6J1K7W7	3.5e-103	85.84	RNA-binding KH domain-containing protein PEPPER-like OS=Cucurbita maxima OX=3661...	[more]
A0A6J1EV22	3.5e-103	85.84	RNA-binding KH domain-containing protein PEPPER-like OS=Cucurbita moschata OX=36...	[more]
A0A6J1D9V1	1.5e-101	84.48	RNA-binding KH domain-containing protein PEPPER OS=Momordica charantia OX=3673 G...	[more]

BLAST of Carg24193 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26000.1	1.1e-64	70.59	RNA-binding KH domain-containing protein	[more]
AT3G04610.1	2.0e-42	42.62	RNA-binding KH domain-containing protein	[more]
AT1G51580.1	2.2e-17	30.85	RNA-binding KH domain-containing protein	[more]
AT5G15270.2	5.0e-17	35.21	RNA-binding KH domain-containing protein	[more]
AT5G15270.1	5.0e-17	35.21	RNA-binding KH domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 167..233 e-value: 0.009 score: 25.2 coord: 79..152 e-value: 6.2E-11 score: 52.3
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 171..227 e-value: 5.2E-9 score: 35.8 coord: 83..135 e-value: 1.8E-11 score: 43.7
None	No IPR available	GENE3D	3.30.310.210		coord: 80..234 e-value: 4.0E-29 score: 103.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 226..246
None	No IPR available	PANTHER	PTHR10288:SF277	RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER	coord: 69..229
None	No IPR available	PANTHER	PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	coord: 69..229
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 168..225 score: 11.594319
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 80..147 score: 14.193756
None	No IPR available	CDD	cd02396	PCBP_like_KH	coord: 170..225 e-value: 2.08047E-14 score: 64.0347
None	No IPR available	CDD	cd02396	PCBP_like_KH	coord: 82..151 e-value: 5.12724E-21 score: 81.3687
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 165..226
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 74..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24193-RA	Carg24193-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048467	gynoecium development
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0048579	negative regulation of long-day photoperiodism, flowering
biological_process	GO:0048577	negative regulation of short-day photoperiodism, flowering
biological_process	GO:0010468	regulation of gene expression
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding