Carg23406 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg23406
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr06: 3159504 .. 3160399 (-)
RNA-Seq Expression	Carg23406
Synteny	Carg23406

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGAGAAAATTGGGAAGGATTGAAGTTCGGAGAAGAAGTGGAAAATGGGAAGATCGGAAGAGGGATGCAGGAGGAGGACGATGAGGATGGTCGTACGGAATCACTGTCTCTCTCTCTCTCTCTCTTTCTCGAAGAAAAGTTGCGAAATCGCCGTCTCGCTCCTCAGCCTCAGGGCATGAGCCACTCCATTTTCTCTCTCTCATGGTTTCGGCATGACTGCGACTCATGGGCCGAAGCCCAAATCTGTTTTCTTGTGAGCCCAAATTAATGGGCCTGGCCCATCATTATATGAAAATTGTGTAACTGAGGGTATTTATCGGCCCAACCAATTATTTTGATTATAATTTTTTTAAAATACTTATTAAAAATATTTTAGTTTAATTAATTCGAGTTATTTTAGTTATTTATTTAATTTTTTAAAAATAAAAATATATGTAAAAAATATTACATTAAGTTTTGCAACTCAAATTAAATATATATATATATTATATATATATTAATATATATATATTTATTTATTTATTTATTTATTTATTTATTTATTTTAGTTACGATAAAAAAATTTATAAACTTTCTTTTAAGAGCTTTTAGCATAAATAATCGAAAAAATAGTTTTAAAATATAAAAATTTAAAGTAAATAATTTTAAACTATAAAAAAAATTAAAATTAATAAATGTATATATAATTATATAATAAACAAATTTTTTATTGAGTTCAAATTAATTTTTAAAAAATTCTTAAACTAATTGAAAATTTCAATTATTTGAATTTAATTTAATTCAAATAAGTTCTGTATAAATAAATAAATAAAATGAAATTGGAAATTGGAAATTGGAATTGTAGCGCTGAAGCTCGTCTTCGAGCTTGAAATTGCAGGAAGCAGTGCTTAG

mRNA sequence

ATGAAAGGAGAAAATTGGGAAGGATTGAAGTTCGGAGAAGAAGTGGAAAATGGGAAGATCGGAAGAGGGATGCAGGAGGAGGACGATGAGGATGGTCGTACGGAATCACTGTCTCTCTCTCTCTCTCTCTTTCTCGAAGAAAAGTTGCGAAATCGCCGTCTCGCTCCTCAGCCTCAGGGCATGAGCCACTCCATTTTCTCTCTCTCATGGTTTCGGCATGACTGCGACTCATGGGCCGAAGCCCAAATCTCGCTGAAGCTCGTCTTCGAGCTTGAAATTGCAGGAAGCAGTGCTTAG

Coding sequence (CDS)

ATGAAAGGAGAAAATTGGGAAGGATTGAAGTTCGGAGAAGAAGTGGAAAATGGGAAGATCGGAAGAGGGATGCAGGAGGAGGACGATGAGGATGGTCGTACGGAATCACTGTCTCTCTCTCTCTCTCTCTTTCTCGAAGAAAAGTTGCGAAATCGCCGTCTCGCTCCTCAGCCTCAGGGCATGAGCCACTCCATTTTCTCTCTCTCATGGTTTCGGCATGACTGCGACTCATGGGCCGAAGCCCAAATCTCGCTGAAGCTCGTCTTCGAGCTTGAAATTGCAGGAAGCAGTGCTTAG

Protein sequence

MKGENWEGLKFGEEVENGKIGRGMQEEDDEDGRTESLSLSLSLFLEEKLRNRRLAPQPQGMSHSIFSLSWFRHDCDSWAEAQISLKLVFELEIAGSSA

Homology

[Close]

BLAST of Carg23406 vs. NCBI nr
Match: KAG7028248.1 (hypothetical protein SDJN02_09429, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 197.2 bits (500), Expect = 6.6e-47
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MKGENWEGLKFGEEVENGKIGRGMQEEDDEDGRTESLSLSLSLFLEEKLRNRRLAPQPQG 60
          MKGENWEGLKFGEEVENGKIGRGMQEEDDEDGRTESLSLSLSLFLEEKLRNRRLAPQPQG
Sbjct: 1  MKGENWEGLKFGEEVENGKIGRGMQEEDDEDGRTESLSLSLSLFLEEKLRNRRLAPQPQG 60

Query: 61 MSHSIFSLSWFRHDCDSWAEAQISLKLVFELEIAGSSA 99
          MSHSIFSLSWFRHDCDSWAEAQISLKLVFELEIAGSSA
Sbjct: 61 MSHSIFSLSWFRHDCDSWAEAQISLKLVFELEIAGSSA 98

[Close]

BLAST of Carg23406 vs. NCBI nr
Match: KAG6596712.1 (hypothetical protein SDJN03_09892, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 171.4 bits (433), Expect = 3.9e-39
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MKGENWEGLKFGEEVENGKIGRGMQEEDDEDGRTESLSLSLSLFLEEKLRNRRLAPQPQG 60
          MKGENWEGLKFGEEVENGKIGRGMQEEDDEDGRTESLSLSLSLFLEEKLRNRRLAPQPQG
Sbjct: 1  MKGENWEGLKFGEEVENGKIGRGMQEEDDEDGRTESLSLSLSLFLEEKLRNRRLAPQPQG 60

Query: 61 MSHSIFSLSWFRHDCDSWAEAQI 84
          MSHSIFSLSWFRHDCDSWAEAQI
Sbjct: 61 MSHSIFSLSWFRHDCDSWAEAQI 83

The following BLAST results are available for this feature:

BLAST of Carg23406 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028248.1	6.6e-47	100.00	hypothetical protein SDJN02_09429, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6596712.1	3.9e-39	100.00	hypothetical protein SDJN03_09892, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Carg23406 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg23406 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg23406 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23406-RA	Carg23406-RA	mRNA