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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGAAAGGAGAAAATTGGGAAGGATTGAAGTTCGGAGAAGAAGTGGAAAATGGGAAGATCGGAAGAGGGATGCAGGAGGAGGACGATGAGGATGGTCGTACGGAATCACTGTCTCTCTCTCTCTCTCTCTTTCTCGAAGAAAAGTTGCGAAATCGCCGTCTCGCTCCTCAGCCTCAGGGCATGAGCCACTCCATTTTCTCTCTCTCATGGTTTCGGCATGACTGCGACTCATGGGCCGAAGCCCAAATCTGTTTTCTTGTGAGCCCAAATTAATGGGCCTGGCCCATCATTATATGAAAATTGTGTAACTGAGGGTATTTATCGGCCCAACCAATTATTTTGATTATAATTTTTTTAAAATACTTATTAAAAATATTTTAGTTTAATTAATTCGAGTTATTTTAGTTATTTATTTAATTTTTTAAAAATAAAAATATATGTAAAAAATATTACATTAAGTTTTGCAACTCAAATTAAATATATATATATATTATATATATATTAATATATATATATTTATTTATTTATTTATTTATTTATTTATTTATTTTAGTTACGATAAAAAAATTTATAAACTTTCTTTTAAGAGCTTTTAGCATAAATAATCGAAAAAATAGTTTTAAAATATAAAAATTTAAAGTAAATAATTTTAAACTATAAAAAAAATTAAAATTAATAAATGTATATATAATTATATAATAAACAAATTTTTTATTGAGTTCAAATTAATTTTTAAAAAATTCTTAAACTAATTGAAAATTTCAATTATTTGAATTTAATTTAATTCAAATAAGTTCTGTATAAATAAATAAATAAAATGAAATTGGAAATTGGAAATTGGAATTGTAGCGCTGAAGCTCGTCTTCGAGCTTGAAATTGCAGGAAGCAGTGCTTAG mRNA sequence ATGAAAGGAGAAAATTGGGAAGGATTGAAGTTCGGAGAAGAAGTGGAAAATGGGAAGATCGGAAGAGGGATGCAGGAGGAGGACGATGAGGATGGTCGTACGGAATCACTGTCTCTCTCTCTCTCTCTCTTTCTCGAAGAAAAGTTGCGAAATCGCCGTCTCGCTCCTCAGCCTCAGGGCATGAGCCACTCCATTTTCTCTCTCTCATGGTTTCGGCATGACTGCGACTCATGGGCCGAAGCCCAAATCTCGCTGAAGCTCGTCTTCGAGCTTGAAATTGCAGGAAGCAGTGCTTAG Coding sequence (CDS) ATGAAAGGAGAAAATTGGGAAGGATTGAAGTTCGGAGAAGAAGTGGAAAATGGGAAGATCGGAAGAGGGATGCAGGAGGAGGACGATGAGGATGGTCGTACGGAATCACTGTCTCTCTCTCTCTCTCTCTTTCTCGAAGAAAAGTTGCGAAATCGCCGTCTCGCTCCTCAGCCTCAGGGCATGAGCCACTCCATTTTCTCTCTCTCATGGTTTCGGCATGACTGCGACTCATGGGCCGAAGCCCAAATCTCGCTGAAGCTCGTCTTCGAGCTTGAAATTGCAGGAAGCAGTGCTTAG Protein sequence MKGENWEGLKFGEEVENGKIGRGMQEEDDEDGRTESLSLSLSLFLEEKLRNRRLAPQPQGMSHSIFSLSWFRHDCDSWAEAQISLKLVFELEIAGSSA
Homology
BLAST of Carg23406-RA vs. NCBI nr
Match: KAG7028248.1 (hypothetical protein SDJN02_09429, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 197.2 bits (500), Expect = 6.6e-47 Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0
Query: 1 MKGENWEGLKFGEEVENGKIGRGMQEEDDEDGRTESLSLSLSLFLEEKLRNRRLAPQPQG 60
MKGENWEGLKFGEEVENGKIGRGMQEEDDEDGRTESLSLSLSLFLEEKLRNRRLAPQPQG
Sbjct: 1 MKGENWEGLKFGEEVENGKIGRGMQEEDDEDGRTESLSLSLSLFLEEKLRNRRLAPQPQG 60
Query: 61 MSHSIFSLSWFRHDCDSWAEAQISLKLVFELEIAGSSA 99
MSHSIFSLSWFRHDCDSWAEAQISLKLVFELEIAGSSA
Sbjct: 61 MSHSIFSLSWFRHDCDSWAEAQISLKLVFELEIAGSSA 98
BLAST of Carg23406-RA vs. NCBI nr
Match: KAG6596712.1 (hypothetical protein SDJN03_09892, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 171.4 bits (433), Expect = 3.9e-39 Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0
Query: 1 MKGENWEGLKFGEEVENGKIGRGMQEEDDEDGRTESLSLSLSLFLEEKLRNRRLAPQPQG 60
MKGENWEGLKFGEEVENGKIGRGMQEEDDEDGRTESLSLSLSLFLEEKLRNRRLAPQPQG
Sbjct: 1 MKGENWEGLKFGEEVENGKIGRGMQEEDDEDGRTESLSLSLSLFLEEKLRNRRLAPQPQG 60
Query: 61 MSHSIFSLSWFRHDCDSWAEAQI 84
MSHSIFSLSWFRHDCDSWAEAQI
Sbjct: 61 MSHSIFSLSWFRHDCDSWAEAQI 83
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG7028248.1 | 6.6e-47 | 100.00 | hypothetical protein SDJN02_09429, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| KAG6596712.1 | 3.9e-39 | 100.00 | hypothetical protein SDJN03_09892, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..34 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..29 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| Carg23406 | Carg23406 | gene |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg23406-RA:2 | Carg23406-RA:2 | exon |
| Carg23406-RA:1 | Carg23406-RA:1 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg23406-RA:cds | Carg23406-RA:cds_2 | CDS |
| Carg23406-RA:cds | Carg23406-RA:cds | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg23406-RA | Carg23406-RA-protein | polypeptide |
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