Carg20792 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg20792
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr15: 9759753 .. 9760344 (+)
RNA-Seq Expression	Carg20792
Synteny	Carg20792

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TATATTTATCCTCGGTCGTTGCTTCCAATGGGAGCCTAAACCATGTCGTAGTTGTAGCCATGGCTGTTCATCTTCTTGTCGATGGGATATGCGGAGGGGAAATGGTATTACTAACCACAAAATTTGGTACTCAATTTCCATTTCTTTGCGTTGTTTATTTCATTGAAGGATCTTTTGATCGCATTTACATTTCTGAATCTCATATCTTTCTGCGCAAACATTTTCTTAGCAACAATGTTCTTGTAAAGTTTCGCATCTTTCTGTAGAGTTTGATTTCATGTTGAATTCCAAAATAGAAGCTAGAAATTAGAGTAGGATGAGGATGAACTGAATCGCTGGAATGTTTTTCAGTCTTTTTCTCCCATGCCCGCCAACTGTTTGTTAAAATTCCCAGAAGAACCCAACTCACAATCCTTGTCTCCAAGGTCCTTGTAGTAATCCAGCAACTGATTCAAGCTATCCTCTGAGGAATGTGGTCCAAAATCAGTGTAGGATTCACTGCCCCATGTTGAGAAATTGGACCATGAAGCATCTTGAAGAGCCTCCATCCAAATTTGGCTTGTTAATGGCTGATCTTTTGCAGGGAAATTAG

mRNA sequence

TATATTTATCCTCGGTCGTTGCTTCCAATGGGAGCCTAAACCATGTCGTAGTTGTAGCCATGGCTGTTCATCTTCTTGTCGATGGGATATGCGGAGGGGAAATGAAGAACCCAACTCACAATCCTTGTCTCCAAGGTCCTTGTAGTAATCCAGCAACTGATTCAAGCTATCCTCTGAGGAATGTGGTCCAAAATCAGTGTAGGATTCACTGCCCCATGTTGAGAAATTGGACCATGAAGCATCTTGAAGAGCCTCCATCCAAATTTGGCTTGTTAATGGCTGATCTTTTGCAGGGAAATTAG

Coding sequence (CDS)

ATGGCTGTTCATCTTCTTGTCGATGGGATATGCGGAGGGGAAATGAAGAACCCAACTCACAATCCTTGTCTCCAAGGTCCTTGTAGTAATCCAGCAACTGATTCAAGCTATCCTCTGAGGAATGTGGTCCAAAATCAGTGTAGGATTCACTGCCCCATGTTGAGAAATTGGACCATGAAGCATCTTGAAGAGCCTCCATCCAAATTTGGCTTGTTAATGGCTGATCTTTTGCAGGGAAATTAG

Protein sequence

MAVHLLVDGICGGEMKNPTHNPCLQGPCSNPATDSSYPLRNVVQNQCRIHCPMLRNWTMKHLEEPPSKFGLLMADLLQGN

Homology

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BLAST of Carg20792 vs. NCBI nr
Match: KAG7017111.1 (hypothetical protein SDJN02_22223 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179.9 bits (455), Expect = 8.9e-42
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MAVHLLVDGICGGEMKNPTHNPCLQGPCSNPATDSSYPLRNVVQNQCRIHCPMLRNWTMK 60
          MAVHLLVDGICGGEMKNPTHNPCLQGPCSNPATDSSYPLRNVVQNQCRIHCPMLRNWTMK
Sbjct: 1  MAVHLLVDGICGGEMKNPTHNPCLQGPCSNPATDSSYPLRNVVQNQCRIHCPMLRNWTMK 60

Query: 61 HLEEPPSKFGLLMADLLQGN 81
          HLEEPPSKFGLLMADLLQGN
Sbjct: 61 HLEEPPSKFGLLMADLLQGN 80

The following BLAST results are available for this feature:

BLAST of Carg20792 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7017111.1	8.9e-42	100.00	hypothetical protein SDJN02_22223 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Carg20792 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg20792 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg20792 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20792-RA	Carg20792-RA	mRNA