Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. TATATTTATCCTCGGTCGTTGCTTCCAATGGGAGCCTAAACCATGTCGTAGTTGTAGCCATGGCTGTTCATCTTCTTGTCGATGGGATATGCGGAGGGGAAATGGTATTACTAACCACAAAATTTGGTACTCAATTTCCATTTCTTTGCGTTGTTTATTTCATTGAAGGATCTTTTGATCGCATTTACATTTCTGAATCTCATATCTTTCTGCGCAAACATTTTCTTAGCAACAATGTTCTTGTAAAGTTTCGCATCTTTCTGTAGAGTTTGATTTCATGTTGAATTCCAAAATAGAAGCTAGAAATTAGAGTAGGATGAGGATGAACTGAATCGCTGGAATGTTTTTCAGTCTTTTTCTCCCATGCCCGCCAACTGTTTGTTAAAATTCCCAGAAGAACCCAACTCACAATCCTTGTCTCCAAGGTCCTTGTAGTAATCCAGCAACTGATTCAAGCTATCCTCTGAGGAATGTGGTCCAAAATCAGTGTAGGATTCACTGCCCCATGTTGAGAAATTGGACCATGAAGCATCTTGAAGAGCCTCCATCCAAATTTGGCTTGTTAATGGCTGATCTTTTGCAGGGAAATTAG mRNA sequence TATATTTATCCTCGGTCGTTGCTTCCAATGGGAGCCTAAACCATGTCGTAGTTGTAGCCATGGCTGTTCATCTTCTTGTCGATGGGATATGCGGAGGGGAAATGAAGAACCCAACTCACAATCCTTGTCTCCAAGGTCCTTGTAGTAATCCAGCAACTGATTCAAGCTATCCTCTGAGGAATGTGGTCCAAAATCAGTGTAGGATTCACTGCCCCATGTTGAGAAATTGGACCATGAAGCATCTTGAAGAGCCTCCATCCAAATTTGGCTTGTTAATGGCTGATCTTTTGCAGGGAAATTAG Coding sequence (CDS) ATGGCTGTTCATCTTCTTGTCGATGGGATATGCGGAGGGGAAATGAAGAACCCAACTCACAATCCTTGTCTCCAAGGTCCTTGTAGTAATCCAGCAACTGATTCAAGCTATCCTCTGAGGAATGTGGTCCAAAATCAGTGTAGGATTCACTGCCCCATGTTGAGAAATTGGACCATGAAGCATCTTGAAGAGCCTCCATCCAAATTTGGCTTGTTAATGGCTGATCTTTTGCAGGGAAATTAG Protein sequence MAVHLLVDGICGGEMKNPTHNPCLQGPCSNPATDSSYPLRNVVQNQCRIHCPMLRNWTMKHLEEPPSKFGLLMADLLQGN
Homology
BLAST of Carg20792-RA vs. NCBI nr
Match: KAG7017111.1 (hypothetical protein SDJN02_22223 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 179.9 bits (455), Expect = 8.9e-42 Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0
Query: 1 MAVHLLVDGICGGEMKNPTHNPCLQGPCSNPATDSSYPLRNVVQNQCRIHCPMLRNWTMK 60
MAVHLLVDGICGGEMKNPTHNPCLQGPCSNPATDSSYPLRNVVQNQCRIHCPMLRNWTMK
Sbjct: 1 MAVHLLVDGICGGEMKNPTHNPCLQGPCSNPATDSSYPLRNVVQNQCRIHCPMLRNWTMK 60
Query: 61 HLEEPPSKFGLLMADLLQGN 81
HLEEPPSKFGLLMADLLQGN
Sbjct: 61 HLEEPPSKFGLLMADLLQGN 80
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG7017111.1 | 8.9e-42 | 100.00 | hypothetical protein SDJN02_22223 [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
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Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| Carg20792 | Carg20792 | gene |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg20792-RA:1 | Carg20792-RA:1 | exon |
| Carg20792-RA:2 | Carg20792-RA:2 | exon |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg20792-RA:five_prime_utr | Carg20792-RA:five_prime_utr | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg20792-RA:cds | Carg20792-RA:cds | CDS |
| Carg20792-RA:cds | Carg20792-RA:cds_2 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg20792-RA | Carg20792-RA-protein | polypeptide |
|
