Carg20792 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg20792
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr15: 9759753 .. 9760344 (+)
RNA-Seq ExpressionCarg20792
SyntenyCarg20792
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TATATTTATCCTCGGTCGTTGCTTCCAATGGGAGCCTAAACCATGTCGTAGTTGTAGCCATGGCTGTTCATCTTCTTGTCGATGGGATATGCGGAGGGGAAATGGTATTACTAACCACAAAATTTGGTACTCAATTTCCATTTCTTTGCGTTGTTTATTTCATTGAAGGATCTTTTGATCGCATTTACATTTCTGAATCTCATATCTTTCTGCGCAAACATTTTCTTAGCAACAATGTTCTTGTAAAGTTTCGCATCTTTCTGTAGAGTTTGATTTCATGTTGAATTCCAAAATAGAAGCTAGAAATTAGAGTAGGATGAGGATGAACTGAATCGCTGGAATGTTTTTCAGTCTTTTTCTCCCATGCCCGCCAACTGTTTGTTAAAATTCCCAGAAGAACCCAACTCACAATCCTTGTCTCCAAGGTCCTTGTAGTAATCCAGCAACTGATTCAAGCTATCCTCTGAGGAATGTGGTCCAAAATCAGTGTAGGATTCACTGCCCCATGTTGAGAAATTGGACCATGAAGCATCTTGAAGAGCCTCCATCCAAATTTGGCTTGTTAATGGCTGATCTTTTGCAGGGAAATTAG

mRNA sequence

TATATTTATCCTCGGTCGTTGCTTCCAATGGGAGCCTAAACCATGTCGTAGTTGTAGCCATGGCTGTTCATCTTCTTGTCGATGGGATATGCGGAGGGGAAATGAAGAACCCAACTCACAATCCTTGTCTCCAAGGTCCTTGTAGTAATCCAGCAACTGATTCAAGCTATCCTCTGAGGAATGTGGTCCAAAATCAGTGTAGGATTCACTGCCCCATGTTGAGAAATTGGACCATGAAGCATCTTGAAGAGCCTCCATCCAAATTTGGCTTGTTAATGGCTGATCTTTTGCAGGGAAATTAG

Coding sequence (CDS)

ATGGCTGTTCATCTTCTTGTCGATGGGATATGCGGAGGGGAAATGAAGAACCCAACTCACAATCCTTGTCTCCAAGGTCCTTGTAGTAATCCAGCAACTGATTCAAGCTATCCTCTGAGGAATGTGGTCCAAAATCAGTGTAGGATTCACTGCCCCATGTTGAGAAATTGGACCATGAAGCATCTTGAAGAGCCTCCATCCAAATTTGGCTTGTTAATGGCTGATCTTTTGCAGGGAAATTAG

Protein sequence

MAVHLLVDGICGGEMKNPTHNPCLQGPCSNPATDSSYPLRNVVQNQCRIHCPMLRNWTMKHLEEPPSKFGLLMADLLQGN
Homology
[Close]
BLAST of Carg20792 vs. NCBI nr
Match: KAG7017111.1 (hypothetical protein SDJN02_22223 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179.9 bits (455), Expect = 8.9e-42
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MAVHLLVDGICGGEMKNPTHNPCLQGPCSNPATDSSYPLRNVVQNQCRIHCPMLRNWTMK 60
          MAVHLLVDGICGGEMKNPTHNPCLQGPCSNPATDSSYPLRNVVQNQCRIHCPMLRNWTMK
Sbjct: 1  MAVHLLVDGICGGEMKNPTHNPCLQGPCSNPATDSSYPLRNVVQNQCRIHCPMLRNWTMK 60

Query: 61 HLEEPPSKFGLLMADLLQGN 81
          HLEEPPSKFGLLMADLLQGN
Sbjct: 61 HLEEPPSKFGLLMADLLQGN 80

The following BLAST results are available for this feature:
BLAST of Carg20792 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7017111.18.9e-42100.00hypothetical protein SDJN02_22223 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Carg20792 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20792 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20792 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20792-RACarg20792-RAmRNA