Carg05645 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg05645
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr16: 3540196 .. 3541489 (-)
RNA-Seq ExpressionCarg05645
SyntenyCarg05645
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCGGACTTTGGCTGACTACAACATTCAGAAGTCTACCCTCCGCCTTGTCCTCCACCTGCACGGTGGCTTTTAGGTGGCTCCGATATGTCGATGACTTCCTATTATTACTGGATTTGTGGTGTCTTCGTATGCCCTCCTGGATGGTTTAGTAATAATAAGTACGTACAATTTCATTCTTTCTGTTACAGACAGCTGAATGAATGTACCGTTTTTTCCCCTTGGATATTATGTAAATTATGAAATAGCAAATTAATAATTATTATTTCGGATGAATAAAGAAATAAAGAGATTGCACTTGTATAAATATTTCTACCTTCGATTTATGAATTTTATGTTCAATAATTAAATACCAATTATTTTAGAAGAAGCAAAAACAAAATTTAAAAAAGAAAACCATAAATCTCTTTTTTTTTTAATTAATTAATTAGTTAATTATTAATTTTTTTTTTTCTCAAGGTCAATTACTTAAAAGAAAACCATTATTTTTTTAAGGTCAATTACTTAAAAGAAAAATATAAATCTCTTTTTTTTTTCTTTTTTTTTTAAAAATTAATTAATTAGTTAATTATTATTATTATTTCAAGTCAATTACTTATATTTGCTATGGATACAATGTTGAATGGCTTTGGTGCATTCCTTTACGACCCAAATATCGAACGAACTGCTACCGATGGCCAAACCCCTAGCAGGGTTCCCAAGAGCTATCTCATCTCGTCTGTTTTTTTAATCATTCCAACTCATGTAATCATCATAATTATAAGACTTCCGACTACTACGATATTAGGCGTAACTCTGTTAATTGAGACAAGTTTGTTAATTGAGACAAGTTTATTGCCCCAAACAAACTCTACGTAATAACACACATATCATCTATAATATATAAAAAGTCTAATTTTATATTTAAATATTTAAAATATATTATTTGTATTTAAATATAATTTTATATTTAAACATTTTATTTGTAGATAAAATTCTAGTATTTAAAATCAAATAAATTAAATTCTAATTTTCTTACTAAATTTGTAATATATATATAAAAAGTCTAGGTCAGCATGGCATATCTGAAAATATGGCTTCAACGCAGGGCATTTTCATAAGGCTATAGTCGAAAAAACCTTATCCGACCGGAGGAAACACGGTTCGGCCCGGTTTTTGATATATAGAAGACTTGCAGAAAGCTCTAACGGCGTCGTATTCGCCGCACCTCCGACTTCTTCTTCATTACTGTTTCGTTCGCGTTCTTTGTTCATTCTCCTCGGCGATCTTCAGTTCCCAAGCACCAATTTCTAA

mRNA sequence

ATGGTCGGACTTTGGCTGACTACAACATTCAGAAGTCTACCCTCCGCCTTGTCCTCCACCTGCACGGTGGCTTTTAGGTGGCTCCGATATGTCGATGACTTCCTATTATTACTGGATTTGTGGTGTCTTCGGCATTTTCATAAGGCTATAGTCGAAAAAACCTTATCCGACCGGAGGAAACACGGTTCGGCCCGGTTTTTGATATATAGAAGACTTGCAGAAAGCTCTAACGGCGTCGTATTCGCCGCACCTCCGACTTCTTCTTCATTACTGTTTCGTTCGCGTTCTTTGTTCATTCTCCTCGGCGATCTTCAGTTCCCAAGCACCAATTTCTAA

Coding sequence (CDS)

ATGGTCGGACTTTGGCTGACTACAACATTCAGAAGTCTACCCTCCGCCTTGTCCTCCACCTGCACGGTGGCTTTTAGGTGGCTCCGATATGTCGATGACTTCCTATTATTACTGGATTTGTGGTGTCTTCGGCATTTTCATAAGGCTATAGTCGAAAAAACCTTATCCGACCGGAGGAAACACGGTTCGGCCCGGTTTTTGATATATAGAAGACTTGCAGAAAGCTCTAACGGCGTCGTATTCGCCGCACCTCCGACTTCTTCTTCATTACTGTTTCGTTCGCGTTCTTTGTTCATTCTCCTCGGCGATCTTCAGTTCCCAAGCACCAATTTCTAA

Protein sequence

MVGLWLTTTFRSLPSALSSTCTVAFRWLRYVDDFLLLLDLWCLRHFHKAIVEKTLSDRRKHGSARFLIYRRLAESSNGVVFAAPPTSSSLLFRSRSLFILLGDLQFPSTNF
Homology
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BLAST of Carg05645 vs. NCBI nr
Match: KAG7015215.1 (hypothetical protein SDJN02_22848, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 223.0 bits (567), Expect = 1.3e-54
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MVGLWLTTTFRSLPSALSSTCTVAFRWLRYVDDFLLLLDLWCLRHFHKAIVEKTLSDRRK 60
           MVGLWLTTTFRSLPSALSSTCTVAFRWLRYVDDFLLLLDLWCLRHFHKAIVEKTLSDRRK
Sbjct: 1   MVGLWLTTTFRSLPSALSSTCTVAFRWLRYVDDFLLLLDLWCLRHFHKAIVEKTLSDRRK 60

Query: 61  HGSARFLIYRRLAESSNGVVFAAPPTSSSLLFRSRSLFILLGDLQFPSTNF 112
           HGSARFLIYRRLAESSNGVVFAAPPTSSSLLFRSRSLFILLGDLQFPSTNF
Sbjct: 61  HGSARFLIYRRLAESSNGVVFAAPPTSSSLLFRSRSLFILLGDLQFPSTNF 111

The following BLAST results are available for this feature:
BLAST of Carg05645 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7015215.11.3e-54100.00hypothetical protein SDJN02_22848, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg05645 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05645 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05645 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05645-RACarg05645-RAmRNA