Carg05645-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg05645-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr16: 3540196 .. 3541489 (-)
Sequence length336
RNA-Seq ExpressionCarg05645-RA
SyntenyCarg05645-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCGGACTTTGGCTGACTACAACATTCAGAAGTCTACCCTCCGCCTTGTCCTCCACCTGCACGGTGGCTTTTAGGTGGCTCCGATATGTCGATGACTTCCTATTATTACTGGATTTGTGGTGTCTTCGTATGCCCTCCTGGATGGTTTAGTAATAATAAGTACGTACAATTTCATTCTTTCTGTTACAGACAGCTGAATGAATGTACCGTTTTTTCCCCTTGGATATTATGTAAATTATGAAATAGCAAATTAATAATTATTATTTCGGATGAATAAAGAAATAAAGAGATTGCACTTGTATAAATATTTCTACCTTCGATTTATGAATTTTATGTTCAATAATTAAATACCAATTATTTTAGAAGAAGCAAAAACAAAATTTAAAAAAGAAAACCATAAATCTCTTTTTTTTTTAATTAATTAATTAGTTAATTATTAATTTTTTTTTTTCTCAAGGTCAATTACTTAAAAGAAAACCATTATTTTTTTAAGGTCAATTACTTAAAAGAAAAATATAAATCTCTTTTTTTTTTCTTTTTTTTTTAAAAATTAATTAATTAGTTAATTATTATTATTATTTCAAGTCAATTACTTATATTTGCTATGGATACAATGTTGAATGGCTTTGGTGCATTCCTTTACGACCCAAATATCGAACGAACTGCTACCGATGGCCAAACCCCTAGCAGGGTTCCCAAGAGCTATCTCATCTCGTCTGTTTTTTTAATCATTCCAACTCATGTAATCATCATAATTATAAGACTTCCGACTACTACGATATTAGGCGTAACTCTGTTAATTGAGACAAGTTTGTTAATTGAGACAAGTTTATTGCCCCAAACAAACTCTACGTAATAACACACATATCATCTATAATATATAAAAAGTCTAATTTTATATTTAAATATTTAAAATATATTATTTGTATTTAAATATAATTTTATATTTAAACATTTTATTTGTAGATAAAATTCTAGTATTTAAAATCAAATAAATTAAATTCTAATTTTCTTACTAAATTTGTAATATATATATAAAAAGTCTAGGTCAGCATGGCATATCTGAAAATATGGCTTCAACGCAGGGCATTTTCATAAGGCTATAGTCGAAAAAACCTTATCCGACCGGAGGAAACACGGTTCGGCCCGGTTTTTGATATATAGAAGACTTGCAGAAAGCTCTAACGGCGTCGTATTCGCCGCACCTCCGACTTCTTCTTCATTACTGTTTCGTTCGCGTTCTTTGTTCATTCTCCTCGGCGATCTTCAGTTCCCAAGCACCAATTTCTAA

mRNA sequence

ATGGTCGGACTTTGGCTGACTACAACATTCAGAAGTCTACCCTCCGCCTTGTCCTCCACCTGCACGGTGGCTTTTAGGTGGCTCCGATATGTCGATGACTTCCTATTATTACTGGATTTGTGGTGTCTTCGGCATTTTCATAAGGCTATAGTCGAAAAAACCTTATCCGACCGGAGGAAACACGGTTCGGCCCGGTTTTTGATATATAGAAGACTTGCAGAAAGCTCTAACGGCGTCGTATTCGCCGCACCTCCGACTTCTTCTTCATTACTGTTTCGTTCGCGTTCTTTGTTCATTCTCCTCGGCGATCTTCAGTTCCCAAGCACCAATTTCTAA

Coding sequence (CDS)

ATGGTCGGACTTTGGCTGACTACAACATTCAGAAGTCTACCCTCCGCCTTGTCCTCCACCTGCACGGTGGCTTTTAGGTGGCTCCGATATGTCGATGACTTCCTATTATTACTGGATTTGTGGTGTCTTCGGCATTTTCATAAGGCTATAGTCGAAAAAACCTTATCCGACCGGAGGAAACACGGTTCGGCCCGGTTTTTGATATATAGAAGACTTGCAGAAAGCTCTAACGGCGTCGTATTCGCCGCACCTCCGACTTCTTCTTCATTACTGTTTCGTTCGCGTTCTTTGTTCATTCTCCTCGGCGATCTTCAGTTCCCAAGCACCAATTTCTAA

Protein sequence

MVGLWLTTTFRSLPSALSSTCTVAFRWLRYVDDFLLLLDLWCLRHFHKAIVEKTLSDRRKHGSARFLIYRRLAESSNGVVFAAPPTSSSLLFRSRSLFILLGDLQFPSTNF
Homology
[Close]
BLAST of Carg05645-RA vs. NCBI nr
Match: KAG7015215.1 (hypothetical protein SDJN02_22848, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 223.0 bits (567), Expect = 1.3e-54
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MVGLWLTTTFRSLPSALSSTCTVAFRWLRYVDDFLLLLDLWCLRHFHKAIVEKTLSDRRK 60
           MVGLWLTTTFRSLPSALSSTCTVAFRWLRYVDDFLLLLDLWCLRHFHKAIVEKTLSDRRK
Sbjct: 1   MVGLWLTTTFRSLPSALSSTCTVAFRWLRYVDDFLLLLDLWCLRHFHKAIVEKTLSDRRK 60

Query: 61  HGSARFLIYRRLAESSNGVVFAAPPTSSSLLFRSRSLFILLGDLQFPSTNF 112
           HGSARFLIYRRLAESSNGVVFAAPPTSSSLLFRSRSLFILLGDLQFPSTNF
Sbjct: 61  HGSARFLIYRRLAESSNGVVFAAPPTSSSLLFRSRSLFILLGDLQFPSTNF 111

The following BLAST results are available for this feature:
BLAST of Carg05645-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7015215.11.3e-54100.00hypothetical protein SDJN02_22848, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg05645-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05645-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05645-RA vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg05645Carg05645gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg05645-RA:1Carg05645-RA:1exon
Carg05645-RA:2Carg05645-RA:2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg05645-RA:cdsCarg05645-RA:cds_2CDS
Carg05645-RA:cdsCarg05645-RA:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg05645-RACarg05645-RA-proteinpolypeptide