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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCATCAATACTTTTGACAAGTTGCAAAGGAGATTTCCTCGCCTTCAGGTCTCCCCAAACAGTATGTTTTATGCAATGAGTGAAGAGATTTATCTCATCTCTTTCCACACAGTACTTCTGCTGCAAAGTTTCAGATTCTTTGGTAATCCGCTGGCTTGGGTGGAATAAGCTAAGGCACATTGAAGACTGGATGTTGTAATCACTAACTGGTTGGAGTCTGAAAGGAAAGGTGAAGATGTTGTTGTGGTCCAACATCGTAAAGGCTATTATGTGGTTGATTTCAAAAGAAAGAAATGCTAGAATTTTTAAAGATATGTACAATCTTTTGCTCACTTTTGTGATCTTGTACAGCTCATGGCCTCTAATTAAAGTAGCCAACACAAATCTTTCGGTAACTACACTACTTTCCTCATCAACTTAGATTGGAAGGTGTTTCTGTAAGCTCTAGCCTTCGGGAAACGGACTTCTTGGCCCTTGGCCTGTTAGGTGTTTCTCTTTTGTTCTTTCTTCTTGAATGAAACACTCATCTCTCATCAACAAACAAAATAAATAAAGGTTTTTCTAGTGCACCGTTGATTCCTTTCAACCCCGAAACAGATAGTAGAGTTTCTTAGATAGAAACTAGTCAAAGAGTTTTGACAGTCTTGGCATTCAGAAGTTCTATTACAAATTTTTTGATGAGATCTCCATCCCACAGTTCCAGAATCATATGTCTATCAGTTCAATTTCATGTTCACTAAATTCATGCTTTGAACGTTTTCCAAATGTGAAACATGTGATGAGAGTACCAAAAGTATAGAGTTGGGGGATTGAGTCTGGTTTGTGACTATTTTCCAGGCATTTGTAACTAAAGATTCTTTGAATTGCCCTTTAGACCTTATTATTTTCTATTTGAGCCTCTTTTGTATATTTAGTTCAAGTTGTGGTTTGGCTTCTATGATTGGACCGCAGTTCATAGGCGCTTTAGTATTCTTTTCCAAGTTACCAATAGGTCACACATAATGTTAGGCTTAAGGACAATGACCAGATTATAGAATTTTGCACACCTGATAGCTGAACTACATTTAAACAGAACTAAGGGATATATTCGATTCGAATAGTGAAACTAAAATTGAACATCAGATGGGGAAAATGCAGCTTAAAAAACCGTTCTAGTTATATGGTATTGCTATCAGATGTATGTCAATGAACTATGCAATTTCAAAAGCAATACTCATTTGCCAAGGGTATAAGTTCACACAACAGATTACAAAGTTAACAAACTGGGTTTGCAATCCTAACCAGCCTTTTAAACAATAAACAATGAAAACTACAAGTGTAAAAAAAAACAAAAATAAGTTGTGTAATATAGAACAATAATAGTAGTTATCTTTGAAGCAAATGGTAAAGGTGAAGTATAATACCTCCGCACACTGCTCCTCGATCTCATGTTTGAGTTTCAAAACGTATTCACTACTCACGTCCATGTTATTCAAAGCTGTTGCGATCTCCGTCCCCGTCTTCTGTACGCCAACACCACCTAAGAATAGTTTCGCACCTAAATTTGGTTCTCGCATTTTCTGCTGTAATGCCTCTTGGTATTCGTTGCTCAATAGACTACTAGCACCACTCAGAACTGCAATCAATGAACTGATATTCGAAGTAGATATTGCACGTCTTAAGCAACTCTGA mRNA sequence ATGGCATCAATACTTTTGACAAGTTGCAAAGGAGATTTCCTCGCCTTCAGGTCTCCCCAAACATTATCTTTGAAGCAAATGGTAAAGGTGAAGTATAATACCTCCGCACACTGCTCCTCGATCTCATGTTTGAGTTTCAAAACGTATTCACTACTCACGTCCATGTTATTCAAAGCTGTTGCGATCTCCGTCCCCGTCTTCTGTACGCCAACACCACCTAAGAATAGTTTCGCACCTAAATTTGGTTCTCGCATTTTCTGCTGTAATGCCTCTTGGTATTCGTTGCTCAATAGACTACTAGCACCACTCAGAACTGCAATCAATGAACTGATATTCGAAGTAGATATTGCACGTCTTAAGCAACTCTGA Coding sequence (CDS) ATGGCATCAATACTTTTGACAAGTTGCAAAGGAGATTTCCTCGCCTTCAGGTCTCCCCAAACATTATCTTTGAAGCAAATGGTAAAGGTGAAGTATAATACCTCCGCACACTGCTCCTCGATCTCATGTTTGAGTTTCAAAACGTATTCACTACTCACGTCCATGTTATTCAAAGCTGTTGCGATCTCCGTCCCCGTCTTCTGTACGCCAACACCACCTAAGAATAGTTTCGCACCTAAATTTGGTTCTCGCATTTTCTGCTGTAATGCCTCTTGGTATTCGTTGCTCAATAGACTACTAGCACCACTCAGAACTGCAATCAATGAACTGATATTCGAAGTAGATATTGCACGTCTTAAGCAACTCTGA Protein sequence MASILLTSCKGDFLAFRSPQTLSLKQMVKVKYNTSAHCSSISCLSFKTYSLLTSMLFKAVAISVPVFCTPTPPKNSFAPKFGSRIFCCNASWYSLLNRLLAPLRTAINELIFEVDIARLKQL
Homology
BLAST of Carg04987 vs. NCBI nr
Match: KAG7025358.1 (hypothetical protein SDJN02_11853, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 241.1 bits (614), Expect = 4.9e-60 Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0
Query: 1 MASILLTSCKGDFLAFRSPQTLSLKQMVKVKYNTSAHCSSISCLSFKTYSLLTSMLFKAV 60
MASILLTSCKGDFLAFRSPQTLSLKQMVKVKYNTSAHCSSISCLSFKTYSLLTSMLFKAV
Sbjct: 1 MASILLTSCKGDFLAFRSPQTLSLKQMVKVKYNTSAHCSSISCLSFKTYSLLTSMLFKAV 60
Query: 61 AISVPVFCTPTPPKNSFAPKFGSRIFCCNASWYSLLNRLLAPLRTAINELIFEVDIARLK 120
AISVPVFCTPTPPKNSFAPKFGSRIFCCNASWYSLLNRLLAPLRTAINELIFEVDIARLK
Sbjct: 61 AISVPVFCTPTPPKNSFAPKFGSRIFCCNASWYSLLNRLLAPLRTAINELIFEVDIARLK 120
Query: 121 QL 123
QL
Sbjct: 121 QL 122
BLAST of Carg04987 vs. ExPASy TrEMBL
Match: A0A0A9QHZ7 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 1.1e-15 Identity = 48/68 (70.59%), Postives = 52/68 (76.47%), Query Frame = 0
Query: 55 MLFKAVAISVPVFCTPTPPKNSFAPKFGSRIFCCNASWYSLLNRLLAPLRTAINELIFEV 114
MLFKAVAIS PVF TPTPP+ SFAPKFGSRI C+ASWYSLL RL+ P TA E I V
Sbjct: 1 MLFKAVAISSPVFWTPTPPRKSFAPKFGSRILHCSASWYSLLRRLVDPPSTARTEFILAV 60
Query: 115 DIARLKQL 123
D AR +QL
Sbjct: 61 DAARWQQL 68
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG7025358.1 | 4.9e-60 | 100.00 | hypothetical protein SDJN02_11853, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
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| A0A0A9QHZ7 | 1.1e-15 | 70.59 | Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
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