Carg04987-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04987-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr08: 858088 .. 859760 (+)
Sequence length	369
RNA-Seq Expression	Carg04987-RA
Synteny	Carg04987-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCAATACTTTTGACAAGTTGCAAAGGAGATTTCCTCGCCTTCAGGTCTCCCCAAACAGTATGTTTTATGCAATGAGTGAAGAGATTTATCTCATCTCTTTCCACACAGTACTTCTGCTGCAAAGTTTCAGATTCTTTGGTAATCCGCTGGCTTGGGTGGAATAAGCTAAGGCACATTGAAGACTGGATGTTGTAATCACTAACTGGTTGGAGTCTGAAAGGAAAGGTGAAGATGTTGTTGTGGTCCAACATCGTAAAGGCTATTATGTGGTTGATTTCAAAAGAAAGAAATGCTAGAATTTTTAAAGATATGTACAATCTTTTGCTCACTTTTGTGATCTTGTACAGCTCATGGCCTCTAATTAAAGTAGCCAACACAAATCTTTCGGTAACTACACTACTTTCCTCATCAACTTAGATTGGAAGGTGTTTCTGTAAGCTCTAGCCTTCGGGAAACGGACTTCTTGGCCCTTGGCCTGTTAGGTGTTTCTCTTTTGTTCTTTCTTCTTGAATGAAACACTCATCTCTCATCAACAAACAAAATAAATAAAGGTTTTTCTAGTGCACCGTTGATTCCTTTCAACCCCGAAACAGATAGTAGAGTTTCTTAGATAGAAACTAGTCAAAGAGTTTTGACAGTCTTGGCATTCAGAAGTTCTATTACAAATTTTTTGATGAGATCTCCATCCCACAGTTCCAGAATCATATGTCTATCAGTTCAATTTCATGTTCACTAAATTCATGCTTTGAACGTTTTCCAAATGTGAAACATGTGATGAGAGTACCAAAAGTATAGAGTTGGGGGATTGAGTCTGGTTTGTGACTATTTTCCAGGCATTTGTAACTAAAGATTCTTTGAATTGCCCTTTAGACCTTATTATTTTCTATTTGAGCCTCTTTTGTATATTTAGTTCAAGTTGTGGTTTGGCTTCTATGATTGGACCGCAGTTCATAGGCGCTTTAGTATTCTTTTCCAAGTTACCAATAGGTCACACATAATGTTAGGCTTAAGGACAATGACCAGATTATAGAATTTTGCACACCTGATAGCTGAACTACATTTAAACAGAACTAAGGGATATATTCGATTCGAATAGTGAAACTAAAATTGAACATCAGATGGGGAAAATGCAGCTTAAAAAACCGTTCTAGTTATATGGTATTGCTATCAGATGTATGTCAATGAACTATGCAATTTCAAAAGCAATACTCATTTGCCAAGGGTATAAGTTCACACAACAGATTACAAAGTTAACAAACTGGGTTTGCAATCCTAACCAGCCTTTTAAACAATAAACAATGAAAACTACAAGTGTAAAAAAAAACAAAAATAAGTTGTGTAATATAGAACAATAATAGTAGTTATCTTTGAAGCAAATGGTAAAGGTGAAGTATAATACCTCCGCACACTGCTCCTCGATCTCATGTTTGAGTTTCAAAACGTATTCACTACTCACGTCCATGTTATTCAAAGCTGTTGCGATCTCCGTCCCCGTCTTCTGTACGCCAACACCACCTAAGAATAGTTTCGCACCTAAATTTGGTTCTCGCATTTTCTGCTGTAATGCCTCTTGGTATTCGTTGCTCAATAGACTACTAGCACCACTCAGAACTGCAATCAATGAACTGATATTCGAAGTAGATATTGCACGTCTTAAGCAACTCTGA

mRNA sequence

ATGGCATCAATACTTTTGACAAGTTGCAAAGGAGATTTCCTCGCCTTCAGGTCTCCCCAAACATTATCTTTGAAGCAAATGGTAAAGGTGAAGTATAATACCTCCGCACACTGCTCCTCGATCTCATGTTTGAGTTTCAAAACGTATTCACTACTCACGTCCATGTTATTCAAAGCTGTTGCGATCTCCGTCCCCGTCTTCTGTACGCCAACACCACCTAAGAATAGTTTCGCACCTAAATTTGGTTCTCGCATTTTCTGCTGTAATGCCTCTTGGTATTCGTTGCTCAATAGACTACTAGCACCACTCAGAACTGCAATCAATGAACTGATATTCGAAGTAGATATTGCACGTCTTAAGCAACTCTGA

Coding sequence (CDS)

ATGGCATCAATACTTTTGACAAGTTGCAAAGGAGATTTCCTCGCCTTCAGGTCTCCCCAAACATTATCTTTGAAGCAAATGGTAAAGGTGAAGTATAATACCTCCGCACACTGCTCCTCGATCTCATGTTTGAGTTTCAAAACGTATTCACTACTCACGTCCATGTTATTCAAAGCTGTTGCGATCTCCGTCCCCGTCTTCTGTACGCCAACACCACCTAAGAATAGTTTCGCACCTAAATTTGGTTCTCGCATTTTCTGCTGTAATGCCTCTTGGTATTCGTTGCTCAATAGACTACTAGCACCACTCAGAACTGCAATCAATGAACTGATATTCGAAGTAGATATTGCACGTCTTAAGCAACTCTGA

Protein sequence

MASILLTSCKGDFLAFRSPQTLSLKQMVKVKYNTSAHCSSISCLSFKTYSLLTSMLFKAVAISVPVFCTPTPPKNSFAPKFGSRIFCCNASWYSLLNRLLAPLRTAINELIFEVDIARLKQL

Homology

[Close]

BLAST of Carg04987-RA vs. NCBI nr
Match: KAG7025358.1 (hypothetical protein SDJN02_11853, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 241.1 bits (614), Expect = 4.9e-60
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MASILLTSCKGDFLAFRSPQTLSLKQMVKVKYNTSAHCSSISCLSFKTYSLLTSMLFKAV 60
           MASILLTSCKGDFLAFRSPQTLSLKQMVKVKYNTSAHCSSISCLSFKTYSLLTSMLFKAV
Sbjct: 1   MASILLTSCKGDFLAFRSPQTLSLKQMVKVKYNTSAHCSSISCLSFKTYSLLTSMLFKAV 60

Query: 61  AISVPVFCTPTPPKNSFAPKFGSRIFCCNASWYSLLNRLLAPLRTAINELIFEVDIARLK 120
           AISVPVFCTPTPPKNSFAPKFGSRIFCCNASWYSLLNRLLAPLRTAINELIFEVDIARLK
Sbjct: 61  AISVPVFCTPTPPKNSFAPKFGSRIFCCNASWYSLLNRLLAPLRTAINELIFEVDIARLK 120

Query: 121 QL 123
           QL
Sbjct: 121 QL 122

[Close]

BLAST of Carg04987-RA vs. ExPASy TrEMBL
Match: A0A0A9QHZ7 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-15
Identity = 48/68 (70.59%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 55  MLFKAVAISVPVFCTPTPPKNSFAPKFGSRIFCCNASWYSLLNRLLAPLRTAINELIFEV 114
           MLFKAVAIS PVF TPTPP+ SFAPKFGSRI  C+ASWYSLL RL+ P  TA  E I  V
Sbjct: 1   MLFKAVAISSPVFWTPTPPRKSFAPKFGSRILHCSASWYSLLRRLVDPPSTARTEFILAV 60

Query: 115 DIARLKQL 123
           D AR +QL
Sbjct: 61  DAARWQQL 68

The following BLAST results are available for this feature:

BLAST of Carg04987-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025358.1	4.9e-60	100.00	hypothetical protein SDJN02_11853, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg04987-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg04987-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A9QHZ7	1.1e-15	70.59	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]

BLAST of Carg04987-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg04987	Carg04987	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg04987-RA:1	Carg04987-RA:1	exon
Carg04987-RA:2	Carg04987-RA:2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg04987-RA:cds	Carg04987-RA:cds	CDS
Carg04987-RA:cds	Carg04987-RA:cds_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg04987-RA	Carg04987-RA-protein	polypeptide