Carg01820 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg01820
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr04: 9154123 .. 9157526 (+)
RNA-Seq Expression	Carg01820
Synteny	Carg01820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCGTCCAAGTAGAGCAAATGCAGGTAGATTCTGTCTGCCTAAAGGTTTGCTTTTGTATCAGGATTACTTATCAAGTTGTTTTCATTGATCCATGCTAAGTTGAAGAAACAATTTATTAACTAAAATGCTGAGTAAAAGAAATTGCCGTCCTTGACACAATTTTTGTCGAATGGGTTTCTACTGTATTCTATAATTTACTTGGTCAGTGAGGTTCTTTCCCTCAATTGACTGAACTGTGAACTAAACTTCTAGTGGTCATGCAATAAAAGAGGTAATAGTCTCTGCTGTTGTGTGGACTCGAGAAGAAAGATTAATTTCTTATCTGCACTATGTTAATGTATCAGCCTTTAGCCTCATGGGTGCCCGATCCGTTTAGGTTTCACTTTCGAGGAAAATAAGGAATCGGTGTTCCATGCTAGAGACAGGTTAGATGAAGAGAATACTAAGATTAAGAATATACCACCATCGTCAAGTAGATTATGAGTTGAAGCACAAATGCTTTAGTTTGGGTAGCATGCTTCTATCTGGCACATTTGTTAGACATGCAGCGAACGATTATGCATTTGTTAGACATGCATTGAACAATTGTTAACACACATGCATGACAAAAATAATAAAATTTTGGAGCAAAATACATCAACTAATTTTGTAAGCATATAAATATATGCTTGTTGAGTTTGAATTTATTTCTTGTTGAGTTTGAATTTATTTTTAATAAAATTGTCTTTGTCCATGTTCAATTTTTAAAAAAGATGTGTTCTTTACGTCATATCTATGTCTCATATCTATACCCATGTTTCTTAGGCTAAGATTGTACCAATGTACTTGAGATGACCAGTTGCATCCCTAAGTGAAGACTGTTATATGCCTTTAAGGGGAGGGGAAAGGGAAGGGGTGGGGTGTCACAATCGTACTCTTGCGGCACTTGTTTTAACCTAACGAACAAGTCACTCGTGAGAAATTCAGATTTCGTAGACAGCGTCAACATATATCGAGCCTTGGGTTGTGATTATGAAAAATGTTCTAAGAAACGTGAGCAAGAAAATACATTTGAAAACAATTTGAAAAATAGAAGAAAACAACTTTATATGGTTATAAGCAAATAAAAGAACACCATGACTTAAATAACATATAACTTAGGGTAAGAAGTGAGAACTAGTCATATCTACCTATAATACATTTTGGGACATTTTAACCTTAGCGGGTGTAGACATGATTTTGGTGAACGATCATATACCCTCATACTAACACAACATGAAATAGTAAAAACTTATCTAAAATGAAAAGATGAAATGGACAGGCATGCAGTCATAGATAAGACATCTTGGATAAGCATGATCAGAACATCCGACATGTTGCTATAGACAACATGTCTTGGACAAGCATAACAGTGATACAAGAGTATTATAAATAAACATAAAGAAATTGAATACTATTTAGACGTATAGACAAAATTTGAATTAAGTGAATCCAAGTTAAATATTCGCACACAATGTATGTACTTAGGGTTCTTAACAATAAATGAATCCTACTTATAAAAATTATTATCTTTAAACAGACTCCAATTATGATACAATATATTCAAGCTCCTCAGTGCCTACGGACATCTATTGTCCTATTAACCTCGACTTTCTCCTCAAGAGTTGAACTGCTGCTTTCTCCACTCCCACCATCAACATCACTCTCCTCAAAAACCAAATCCTTCTCCAGCAGATCGGTTATATTCACTGCTTCAATTGGATTCTCATTCTTCTTTAAACTAGAGGAACACACTGGCTGCTTCAATTCCTTGTTATTTGATTCTAATTCTATCTCACTGTTCTTGGATTCATGAATTTCAGTGAATGTTCTTGGTTTTCGGCTCGGATTACTCACATCATCTTGATCAGGTGATTTAGATTGAGCGAGTTCCACAGCAGCTCTGGCTGCAGCTGCTGCACAAGCAGCCGACTCAAATGCTGCCTGGGCAGCGTCTCCCACGTCTTTGTACTTCTTTCTTCCTCTCATCGAATCAGCATACCAACTCTCTTTCTCTATCTCTTCAGGTAAAATCTCATAAACGCCTTCCACTTTGGATTCCTGCATCTATTTTTTAGGCACTCAATAACGCAAGAACTTGTAATGGATCATTAATTTCATTTCCTACCTCAGTTGAAACTTCATAGGCCTCCAAATCTTTCAAAGTACTGCCATTTTCAGAAGCAACTTGTTTAAGTAACTCCAATTTGACCTCTAAGCTTGGTGGCCTCGCTGACAGCTTCTTTACTATCTGAAAACCCCAAGATTACCACATCACTCAGTGAAAACAGCAAGGGAAAATTGGCATATAAACTTGAGCAAACACTGCTTAAAAGTTGAGATCTCATTATCGGTAGAAGAGGAGAATGAAACATTCTTTACAAGGGTATGAAACCTTTTTCTAGCAAACGCATTTTAAAAACTTTGAGGGAAAACCCGAAAAAGAAAACCCAAAAAAACAGTATCTGCTAGCGGTGGCTTGGACCGCTACAAACGGTATCATAGCCAGACATCGGGCCATGTGCCAGTGAGGAGGCTGAGCCCCGAAGGTGATGGACATGAGGTGGTGTGCCAGTAAGGACATTGGGGCTCAAAAGGAGTGGACACGAGGCAGTGTGCCAGCAAAGATGCTGGGCCCGAAGGAGGTGGATTGGAGAGTCCTACATCGATAGGATAAGAAACTAGTGCCAGCGAGGACGCTGGGCACCAAAGGAGGTTGATTGTGAGATCGTATATCGATTGGGGAGGAGAACGAAACATCCTTTATAATATTTGTTAGCCGTGGATTTAGGCCAAATAACGAGAACATAGAGCAAAGCATACCATTGGACCAACAGCACAATTGTTGCGCAACTCCATAGCACGAGCAGTAAACTCCTTGCCAAAACGACTGGTAATGGCTGAACGAATCTCTATTAGCTCAGGGAAATCCCCACATCTTGAAGATGCAAAAATCAAACCTGAAATTGCCTCCTTCAGTTCTTCTGGACATTCCCTACATAATCAAAAACAAAATTATCAGAATCAGACCAAATCCATCTCTTTATGTTCACATTTACAGGTTCATTTACCGACCTCTGTTGTTCAAGTAGCCTGATTCTTTCAAGTACAGCCTCACAGTAACTCTCTATAATCACATATGCATCCAGCAGTTTCTGGTCCTTAATCACTTGCTCAACCTGTCAAAGACTCCTATTATAAGCTTTGAAGGTTATGGAGCCGAAACCGATGTTTAAAAGTACTTAAAAAATGATCTTACACGAAGGAGGGCTCTCTCTTGGTGGCCAAGCTGCAGCAACTGAACTACGTCAGAACGAGCCTGGGAGGATCTCACCTGGCGCTGGTTTGCAAGGACAGCGAGCCGAGAGATGGCCAGATTAA

mRNA sequence

ATGGAGCGTCCAAGTAGAGCAAATGCAGCAGCTCTGGCTGCAGCTGCTGCACAAGCAGCCGACTCAAATGCTGCCTGGGCAGCGTCTCCCACGTCTTTGTACTTCTTTCTTCCTCTCATCGAATCAGCATACCAACTCTCTTTCTCTATCTCTTCAGGAGGGCTCTCTCTTGGTGGCCAAGCTGCAGCAACTGAACTACGTCAGAACGAGCCTGGGAGGATCTCACCTGGCGCTGGTTTGCAAGGACAGCGAGCCGAGAGATGGCCAGATTAA

Coding sequence (CDS)

ATGGAGCGTCCAAGTAGAGCAAATGCAGCAGCTCTGGCTGCAGCTGCTGCACAAGCAGCCGACTCAAATGCTGCCTGGGCAGCGTCTCCCACGTCTTTGTACTTCTTTCTTCCTCTCATCGAATCAGCATACCAACTCTCTTTCTCTATCTCTTCAGGAGGGCTCTCTCTTGGTGGCCAAGCTGCAGCAACTGAACTACGTCAGAACGAGCCTGGGAGGATCTCACCTGGCGCTGGTTTGCAAGGACAGCGAGCCGAGAGATGGCCAGATTAA

Protein sequence

MERPSRANAAALAAAAAQAADSNAAWAASPTSLYFFLPLIESAYQLSFSISSGGLSLGGQAAATELRQNEPGRISPGAGLQGQRAERWPD

Homology

[Close]

BLAST of Carg01820 vs. NCBI nr
Match: KAG7032098.1 (hypothetical protein SDJN02_06141, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 165.2 bits (417), Expect = 2.5e-37
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MERPSRANAAALAAAAAQAADSNAAWAASPTSLYFFLPLIESAYQLSFSISSGGLSLGGQ 60
          MERPSRANAAALAAAAAQAADSNAAWAASPTSLYFFLPLIESAYQLSFSISSGGLSLGGQ
Sbjct: 1  MERPSRANAAALAAAAAQAADSNAAWAASPTSLYFFLPLIESAYQLSFSISSGGLSLGGQ 60

Query: 61 AAATELRQNEPGRISPGAGLQGQRAERWPD 91
          AAATELRQNEPGRISPGAGLQGQRAERWPD
Sbjct: 61 AAATELRQNEPGRISPGAGLQGQRAERWPD 90

The following BLAST results are available for this feature:

BLAST of Carg01820 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032098.1	2.5e-37	100.00	hypothetical protein SDJN02_06141, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg01820 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg01820 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg01820 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01820-RA	Carg01820-RA	mRNA