Carg01820-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg01820-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr04: 9154123 .. 9157526 (+)
Sequence length	273
RNA-Seq Expression	Carg01820-RA
Synteny	Carg01820-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCGTCCAAGTAGAGCAAATGCAGGTAGATTCTGTCTGCCTAAAGGTTTGCTTTTGTATCAGGATTACTTATCAAGTTGTTTTCATTGATCCATGCTAAGTTGAAGAAACAATTTATTAACTAAAATGCTGAGTAAAAGAAATTGCCGTCCTTGACACAATTTTTGTCGAATGGGTTTCTACTGTATTCTATAATTTACTTGGTCAGTGAGGTTCTTTCCCTCAATTGACTGAACTGTGAACTAAACTTCTAGTGGTCATGCAATAAAAGAGGTAATAGTCTCTGCTGTTGTGTGGACTCGAGAAGAAAGATTAATTTCTTATCTGCACTATGTTAATGTATCAGCCTTTAGCCTCATGGGTGCCCGATCCGTTTAGGTTTCACTTTCGAGGAAAATAAGGAATCGGTGTTCCATGCTAGAGACAGGTTAGATGAAGAGAATACTAAGATTAAGAATATACCACCATCGTCAAGTAGATTATGAGTTGAAGCACAAATGCTTTAGTTTGGGTAGCATGCTTCTATCTGGCACATTTGTTAGACATGCAGCGAACGATTATGCATTTGTTAGACATGCATTGAACAATTGTTAACACACATGCATGACAAAAATAATAAAATTTTGGAGCAAAATACATCAACTAATTTTGTAAGCATATAAATATATGCTTGTTGAGTTTGAATTTATTTCTTGTTGAGTTTGAATTTATTTTTAATAAAATTGTCTTTGTCCATGTTCAATTTTTAAAAAAGATGTGTTCTTTACGTCATATCTATGTCTCATATCTATACCCATGTTTCTTAGGCTAAGATTGTACCAATGTACTTGAGATGACCAGTTGCATCCCTAAGTGAAGACTGTTATATGCCTTTAAGGGGAGGGGAAAGGGAAGGGGTGGGGTGTCACAATCGTACTCTTGCGGCACTTGTTTTAACCTAACGAACAAGTCACTCGTGAGAAATTCAGATTTCGTAGACAGCGTCAACATATATCGAGCCTTGGGTTGTGATTATGAAAAATGTTCTAAGAAACGTGAGCAAGAAAATACATTTGAAAACAATTTGAAAAATAGAAGAAAACAACTTTATATGGTTATAAGCAAATAAAAGAACACCATGACTTAAATAACATATAACTTAGGGTAAGAAGTGAGAACTAGTCATATCTACCTATAATACATTTTGGGACATTTTAACCTTAGCGGGTGTAGACATGATTTTGGTGAACGATCATATACCCTCATACTAACACAACATGAAATAGTAAAAACTTATCTAAAATGAAAAGATGAAATGGACAGGCATGCAGTCATAGATAAGACATCTTGGATAAGCATGATCAGAACATCCGACATGTTGCTATAGACAACATGTCTTGGACAAGCATAACAGTGATACAAGAGTATTATAAATAAACATAAAGAAATTGAATACTATTTAGACGTATAGACAAAATTTGAATTAAGTGAATCCAAGTTAAATATTCGCACACAATGTATGTACTTAGGGTTCTTAACAATAAATGAATCCTACTTATAAAAATTATTATCTTTAAACAGACTCCAATTATGATACAATATATTCAAGCTCCTCAGTGCCTACGGACATCTATTGTCCTATTAACCTCGACTTTCTCCTCAAGAGTTGAACTGCTGCTTTCTCCACTCCCACCATCAACATCACTCTCCTCAAAAACCAAATCCTTCTCCAGCAGATCGGTTATATTCACTGCTTCAATTGGATTCTCATTCTTCTTTAAACTAGAGGAACACACTGGCTGCTTCAATTCCTTGTTATTTGATTCTAATTCTATCTCACTGTTCTTGGATTCATGAATTTCAGTGAATGTTCTTGGTTTTCGGCTCGGATTACTCACATCATCTTGATCAGGTGATTTAGATTGAGCGAGTTCCACAGCAGCTCTGGCTGCAGCTGCTGCACAAGCAGCCGACTCAAATGCTGCCTGGGCAGCGTCTCCCACGTCTTTGTACTTCTTTCTTCCTCTCATCGAATCAGCATACCAACTCTCTTTCTCTATCTCTTCAGGTAAAATCTCATAAACGCCTTCCACTTTGGATTCCTGCATCTATTTTTTAGGCACTCAATAACGCAAGAACTTGTAATGGATCATTAATTTCATTTCCTACCTCAGTTGAAACTTCATAGGCCTCCAAATCTTTCAAAGTACTGCCATTTTCAGAAGCAACTTGTTTAAGTAACTCCAATTTGACCTCTAAGCTTGGTGGCCTCGCTGACAGCTTCTTTACTATCTGAAAACCCCAAGATTACCACATCACTCAGTGAAAACAGCAAGGGAAAATTGGCATATAAACTTGAGCAAACACTGCTTAAAAGTTGAGATCTCATTATCGGTAGAAGAGGAGAATGAAACATTCTTTACAAGGGTATGAAACCTTTTTCTAGCAAACGCATTTTAAAAACTTTGAGGGAAAACCCGAAAAAGAAAACCCAAAAAAACAGTATCTGCTAGCGGTGGCTTGGACCGCTACAAACGGTATCATAGCCAGACATCGGGCCATGTGCCAGTGAGGAGGCTGAGCCCCGAAGGTGATGGACATGAGGTGGTGTGCCAGTAAGGACATTGGGGCTCAAAAGGAGTGGACACGAGGCAGTGTGCCAGCAAAGATGCTGGGCCCGAAGGAGGTGGATTGGAGAGTCCTACATCGATAGGATAAGAAACTAGTGCCAGCGAGGACGCTGGGCACCAAAGGAGGTTGATTGTGAGATCGTATATCGATTGGGGAGGAGAACGAAACATCCTTTATAATATTTGTTAGCCGTGGATTTAGGCCAAATAACGAGAACATAGAGCAAAGCATACCATTGGACCAACAGCACAATTGTTGCGCAACTCCATAGCACGAGCAGTAAACTCCTTGCCAAAACGACTGGTAATGGCTGAACGAATCTCTATTAGCTCAGGGAAATCCCCACATCTTGAAGATGCAAAAATCAAACCTGAAATTGCCTCCTTCAGTTCTTCTGGACATTCCCTACATAATCAAAAACAAAATTATCAGAATCAGACCAAATCCATCTCTTTATGTTCACATTTACAGGTTCATTTACCGACCTCTGTTGTTCAAGTAGCCTGATTCTTTCAAGTACAGCCTCACAGTAACTCTCTATAATCACATATGCATCCAGCAGTTTCTGGTCCTTAATCACTTGCTCAACCTGTCAAAGACTCCTATTATAAGCTTTGAAGGTTATGGAGCCGAAACCGATGTTTAAAAGTACTTAAAAAATGATCTTACACGAAGGAGGGCTCTCTCTTGGTGGCCAAGCTGCAGCAACTGAACTACGTCAGAACGAGCCTGGGAGGATCTCACCTGGCGCTGGTTTGCAAGGACAGCGAGCCGAGAGATGGCCAGATTAA

mRNA sequence

ATGGAGCGTCCAAGTAGAGCAAATGCAGCAGCTCTGGCTGCAGCTGCTGCACAAGCAGCCGACTCAAATGCTGCCTGGGCAGCGTCTCCCACGTCTTTGTACTTCTTTCTTCCTCTCATCGAATCAGCATACCAACTCTCTTTCTCTATCTCTTCAGGAGGGCTCTCTCTTGGTGGCCAAGCTGCAGCAACTGAACTACGTCAGAACGAGCCTGGGAGGATCTCACCTGGCGCTGGTTTGCAAGGACAGCGAGCCGAGAGATGGCCAGATTAA

Coding sequence (CDS)

ATGGAGCGTCCAAGTAGAGCAAATGCAGCAGCTCTGGCTGCAGCTGCTGCACAAGCAGCCGACTCAAATGCTGCCTGGGCAGCGTCTCCCACGTCTTTGTACTTCTTTCTTCCTCTCATCGAATCAGCATACCAACTCTCTTTCTCTATCTCTTCAGGAGGGCTCTCTCTTGGTGGCCAAGCTGCAGCAACTGAACTACGTCAGAACGAGCCTGGGAGGATCTCACCTGGCGCTGGTTTGCAAGGACAGCGAGCCGAGAGATGGCCAGATTAA

Protein sequence

MERPSRANAAALAAAAAQAADSNAAWAASPTSLYFFLPLIESAYQLSFSISSGGLSLGGQAAATELRQNEPGRISPGAGLQGQRAERWPD

Homology

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BLAST of Carg01820-RA vs. NCBI nr
Match: KAG7032098.1 (hypothetical protein SDJN02_06141, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 165.2 bits (417), Expect = 2.5e-37
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MERPSRANAAALAAAAAQAADSNAAWAASPTSLYFFLPLIESAYQLSFSISSGGLSLGGQ 60
          MERPSRANAAALAAAAAQAADSNAAWAASPTSLYFFLPLIESAYQLSFSISSGGLSLGGQ
Sbjct: 1  MERPSRANAAALAAAAAQAADSNAAWAASPTSLYFFLPLIESAYQLSFSISSGGLSLGGQ 60

Query: 61 AAATELRQNEPGRISPGAGLQGQRAERWPD 91
          AAATELRQNEPGRISPGAGLQGQRAERWPD
Sbjct: 61 AAATELRQNEPGRISPGAGLQGQRAERWPD 90

The following BLAST results are available for this feature:

BLAST of Carg01820-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032098.1	2.5e-37	100.00	hypothetical protein SDJN02_06141, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg01820-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg01820-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg01820-RA vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..90

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg01820	Carg01820	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg01820-RA:3	Carg01820-RA:3	exon
Carg01820-RA:2	Carg01820-RA:2	exon
Carg01820-RA:1	Carg01820-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg01820-RA:cds	Carg01820-RA:cds	CDS
Carg01820-RA:cds	Carg01820-RA:cds_2	CDS
Carg01820-RA:cds	Carg01820-RA:cds_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg01820-RA	Carg01820-RA-protein	polypeptide