Carg01820 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg01820
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 9154123 .. 9157526 (+)
RNA-Seq ExpressionCarg01820
SyntenyCarg01820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCGTCCAAGTAGAGCAAATGCAGGTAGATTCTGTCTGCCTAAAGGTTTGCTTTTGTATCAGGATTACTTATCAAGTTGTTTTCATTGATCCATGCTAAGTTGAAGAAACAATTTATTAACTAAAATGCTGAGTAAAAGAAATTGCCGTCCTTGACACAATTTTTGTCGAATGGGTTTCTACTGTATTCTATAATTTACTTGGTCAGTGAGGTTCTTTCCCTCAATTGACTGAACTGTGAACTAAACTTCTAGTGGTCATGCAATAAAAGAGGTAATAGTCTCTGCTGTTGTGTGGACTCGAGAAGAAAGATTAATTTCTTATCTGCACTATGTTAATGTATCAGCCTTTAGCCTCATGGGTGCCCGATCCGTTTAGGTTTCACTTTCGAGGAAAATAAGGAATCGGTGTTCCATGCTAGAGACAGGTTAGATGAAGAGAATACTAAGATTAAGAATATACCACCATCGTCAAGTAGATTATGAGTTGAAGCACAAATGCTTTAGTTTGGGTAGCATGCTTCTATCTGGCACATTTGTTAGACATGCAGCGAACGATTATGCATTTGTTAGACATGCATTGAACAATTGTTAACACACATGCATGACAAAAATAATAAAATTTTGGAGCAAAATACATCAACTAATTTTGTAAGCATATAAATATATGCTTGTTGAGTTTGAATTTATTTCTTGTTGAGTTTGAATTTATTTTTAATAAAATTGTCTTTGTCCATGTTCAATTTTTAAAAAAGATGTGTTCTTTACGTCATATCTATGTCTCATATCTATACCCATGTTTCTTAGGCTAAGATTGTACCAATGTACTTGAGATGACCAGTTGCATCCCTAAGTGAAGACTGTTATATGCCTTTAAGGGGAGGGGAAAGGGAAGGGGTGGGGTGTCACAATCGTACTCTTGCGGCACTTGTTTTAACCTAACGAACAAGTCACTCGTGAGAAATTCAGATTTCGTAGACAGCGTCAACATATATCGAGCCTTGGGTTGTGATTATGAAAAATGTTCTAAGAAACGTGAGCAAGAAAATACATTTGAAAACAATTTGAAAAATAGAAGAAAACAACTTTATATGGTTATAAGCAAATAAAAGAACACCATGACTTAAATAACATATAACTTAGGGTAAGAAGTGAGAACTAGTCATATCTACCTATAATACATTTTGGGACATTTTAACCTTAGCGGGTGTAGACATGATTTTGGTGAACGATCATATACCCTCATACTAACACAACATGAAATAGTAAAAACTTATCTAAAATGAAAAGATGAAATGGACAGGCATGCAGTCATAGATAAGACATCTTGGATAAGCATGATCAGAACATCCGACATGTTGCTATAGACAACATGTCTTGGACAAGCATAACAGTGATACAAGAGTATTATAAATAAACATAAAGAAATTGAATACTATTTAGACGTATAGACAAAATTTGAATTAAGTGAATCCAAGTTAAATATTCGCACACAATGTATGTACTTAGGGTTCTTAACAATAAATGAATCCTACTTATAAAAATTATTATCTTTAAACAGACTCCAATTATGATACAATATATTCAAGCTCCTCAGTGCCTACGGACATCTATTGTCCTATTAACCTCGACTTTCTCCTCAAGAGTTGAACTGCTGCTTTCTCCACTCCCACCATCAACATCACTCTCCTCAAAAACCAAATCCTTCTCCAGCAGATCGGTTATATTCACTGCTTCAATTGGATTCTCATTCTTCTTTAAACTAGAGGAACACACTGGCTGCTTCAATTCCTTGTTATTTGATTCTAATTCTATCTCACTGTTCTTGGATTCATGAATTTCAGTGAATGTTCTTGGTTTTCGGCTCGGATTACTCACATCATCTTGATCAGGTGATTTAGATTGAGCGAGTTCCACAGCAGCTCTGGCTGCAGCTGCTGCACAAGCAGCCGACTCAAATGCTGCCTGGGCAGCGTCTCCCACGTCTTTGTACTTCTTTCTTCCTCTCATCGAATCAGCATACCAACTCTCTTTCTCTATCTCTTCAGGTAAAATCTCATAAACGCCTTCCACTTTGGATTCCTGCATCTATTTTTTAGGCACTCAATAACGCAAGAACTTGTAATGGATCATTAATTTCATTTCCTACCTCAGTTGAAACTTCATAGGCCTCCAAATCTTTCAAAGTACTGCCATTTTCAGAAGCAACTTGTTTAAGTAACTCCAATTTGACCTCTAAGCTTGGTGGCCTCGCTGACAGCTTCTTTACTATCTGAAAACCCCAAGATTACCACATCACTCAGTGAAAACAGCAAGGGAAAATTGGCATATAAACTTGAGCAAACACTGCTTAAAAGTTGAGATCTCATTATCGGTAGAAGAGGAGAATGAAACATTCTTTACAAGGGTATGAAACCTTTTTCTAGCAAACGCATTTTAAAAACTTTGAGGGAAAACCCGAAAAAGAAAACCCAAAAAAACAGTATCTGCTAGCGGTGGCTTGGACCGCTACAAACGGTATCATAGCCAGACATCGGGCCATGTGCCAGTGAGGAGGCTGAGCCCCGAAGGTGATGGACATGAGGTGGTGTGCCAGTAAGGACATTGGGGCTCAAAAGGAGTGGACACGAGGCAGTGTGCCAGCAAAGATGCTGGGCCCGAAGGAGGTGGATTGGAGAGTCCTACATCGATAGGATAAGAAACTAGTGCCAGCGAGGACGCTGGGCACCAAAGGAGGTTGATTGTGAGATCGTATATCGATTGGGGAGGAGAACGAAACATCCTTTATAATATTTGTTAGCCGTGGATTTAGGCCAAATAACGAGAACATAGAGCAAAGCATACCATTGGACCAACAGCACAATTGTTGCGCAACTCCATAGCACGAGCAGTAAACTCCTTGCCAAAACGACTGGTAATGGCTGAACGAATCTCTATTAGCTCAGGGAAATCCCCACATCTTGAAGATGCAAAAATCAAACCTGAAATTGCCTCCTTCAGTTCTTCTGGACATTCCCTACATAATCAAAAACAAAATTATCAGAATCAGACCAAATCCATCTCTTTATGTTCACATTTACAGGTTCATTTACCGACCTCTGTTGTTCAAGTAGCCTGATTCTTTCAAGTACAGCCTCACAGTAACTCTCTATAATCACATATGCATCCAGCAGTTTCTGGTCCTTAATCACTTGCTCAACCTGTCAAAGACTCCTATTATAAGCTTTGAAGGTTATGGAGCCGAAACCGATGTTTAAAAGTACTTAAAAAATGATCTTACACGAAGGAGGGCTCTCTCTTGGTGGCCAAGCTGCAGCAACTGAACTACGTCAGAACGAGCCTGGGAGGATCTCACCTGGCGCTGGTTTGCAAGGACAGCGAGCCGAGAGATGGCCAGATTAA

mRNA sequence

ATGGAGCGTCCAAGTAGAGCAAATGCAGCAGCTCTGGCTGCAGCTGCTGCACAAGCAGCCGACTCAAATGCTGCCTGGGCAGCGTCTCCCACGTCTTTGTACTTCTTTCTTCCTCTCATCGAATCAGCATACCAACTCTCTTTCTCTATCTCTTCAGGAGGGCTCTCTCTTGGTGGCCAAGCTGCAGCAACTGAACTACGTCAGAACGAGCCTGGGAGGATCTCACCTGGCGCTGGTTTGCAAGGACAGCGAGCCGAGAGATGGCCAGATTAA

Coding sequence (CDS)

ATGGAGCGTCCAAGTAGAGCAAATGCAGCAGCTCTGGCTGCAGCTGCTGCACAAGCAGCCGACTCAAATGCTGCCTGGGCAGCGTCTCCCACGTCTTTGTACTTCTTTCTTCCTCTCATCGAATCAGCATACCAACTCTCTTTCTCTATCTCTTCAGGAGGGCTCTCTCTTGGTGGCCAAGCTGCAGCAACTGAACTACGTCAGAACGAGCCTGGGAGGATCTCACCTGGCGCTGGTTTGCAAGGACAGCGAGCCGAGAGATGGCCAGATTAA

Protein sequence

MERPSRANAAALAAAAAQAADSNAAWAASPTSLYFFLPLIESAYQLSFSISSGGLSLGGQAAATELRQNEPGRISPGAGLQGQRAERWPD
Homology
[Close]
BLAST of Carg01820 vs. NCBI nr
Match: KAG7032098.1 (hypothetical protein SDJN02_06141, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 165.2 bits (417), Expect = 2.5e-37
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 1  MERPSRANAAALAAAAAQAADSNAAWAASPTSLYFFLPLIESAYQLSFSISSGGLSLGGQ 60
          MERPSRANAAALAAAAAQAADSNAAWAASPTSLYFFLPLIESAYQLSFSISSGGLSLGGQ
Sbjct: 1  MERPSRANAAALAAAAAQAADSNAAWAASPTSLYFFLPLIESAYQLSFSISSGGLSLGGQ 60

Query: 61 AAATELRQNEPGRISPGAGLQGQRAERWPD 91
          AAATELRQNEPGRISPGAGLQGQRAERWPD
Sbjct: 61 AAATELRQNEPGRISPGAGLQGQRAERWPD 90

The following BLAST results are available for this feature:
BLAST of Carg01820 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7032098.12.5e-37100.00hypothetical protein SDJN02_06141, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg01820 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01820 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01820 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg01820-RACarg01820-RAmRNA