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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGGTCATAGCTTCCAGGTATTTAAAATCAAAGCATCTTGGGATAAACTTCTACCACCAAGGTCAGCTCGACGTAGGTGATCACAGAGCACCTAGTCGAGCCCACCCATTTGACCATCAGGGCTCCATGTAGCCTCGGTATTTATCTTCCAAGCGTTATGGGGGAGAAGGTATCATCCAAAGGGAGTCATGATGCGACTAGACTTACCACTCCCCATTGGGGCCTTATCAGAAAAGCATGGGAGTAGCCAAATCCAGATGTCTAGCAATATTACCACTCCCCATTGGGGCCTTAGAAGGGTCTTTTTTGTAGCCTATCTGCCAAGCAATAAGAACACCCTTATCCCTATCTTAGATTGTAAAAAAGCCATGCCCAAAAATCTTGATCACTCTAACAAATCCTGATATCACATAAAACATCAATCTTAGTGGCAAGAAAATGAGGCCAAATCTCCTAAAAAACAGGACATTTCCACAAAAGAGTGGTTAGTTGATTCCTCGCCCCTTCTGCATAACACACATTTAAAACATCGATGTCCTTTTTAGCTAAATTAGTCTTATTTGGAACAAAATCATGAATAAGTTTCCAAAAACAAATCTTTGCCTTTTGTGGGGTCTTAACCCTCCAAAAAGCTTTCCATAATTACTTTTACCTATCATCGTTAGAAGAACATGCATCGTTCATACAATCAATCTGCAAGTAAAGAAAATAAGCACTTTTAACCGTAAATGCTCCCTTTGGATTTAGACCTCAAATAATTTCATTGTAGCGATGCTTTGGTAAAGAAATTTGAAAATTGGCAAGGGAATGCCTCAACATCCTCTTAACATCTTTATGTTTTAGTCCATATATTTAAAGTTTTAATATAAAGTCTAATGTATTGGAAAAGTTTTAAAAGTTCAAGGAAAAAGACAAAGCAAGAGACTAAAGTAGGTTTAACCTATTTGGCTAAAACTGAAATTAAAGATAAAATGAATACCTTAAAAGTATACATCACTTTAAAAACATACGATAAACAAAACCTGAAATGTAAACAAAACCTGACAAGTGCAAAGTAATACATTTAGATGACGACAGTAATTCAAGAAAATAAAGGGAAAAAAATATCCATTTTTGTCTCTAAGCTCTGGGACCACTCGATAACGACTTATGATTATTTTTCGGTTAAAAAACAAACTCAATATCATATAAATAAAATTATTCTAATCCCGATAAAGTAGAAATTAATATATAATTTCCTAAACAAGTAAAGGAAAAATAGAAGTTAGACAAAAAGATAAAAAAGAATCCATGCAAGTCGTTAAAAAACACTACTATTCATTTTGATTTCACCATTCCTTGTCAATATACATTAGCTTTTGCATTTAAATAAGTCTTATACACGTGTAAAAAATTGGATTTTTTTAAAAACAATTTTATAATAGGATTTTAGTAGAAAATTTCAAATTGAATCTTGATATTTTAATCCAGTTTTGGTGCAGAAATTGATTTTTTCTCAAGAAAGAAGGAAAAAAAAAAAAAGAAAAAAAAAAAAGAAAAAGAAAAATGGGCTTCTTCCTCATGCTCTTAGTCTGTGGTGGGCTTTCCAAAGGAAACGGACTACCATTTATAAGCAAAACCAAAAACACTATGATTAAGTTACCATAAAAATTCACCAATGGCAGAGCAAGCAGAGTCGCTGAAAAACCCTGCAAACTCTACACTCTGGACAACCCCTGCTCCCAAAATCCCTTCTTTGCAGACTCTACTTCTCTACCTACGGATTCTTCTCTGCCATTGTCTCTTCTTCAAACCCTCTTTTCACTTTCTTCTTCCGTTTCCCTTTCTGCACTCATTTTGACCTCAAATCTTCCTCACTTTTTCCCCACTCACCGACGCCGTTTCTGGTTTTCAAACGAGGAGGACTCCCTCCAGAGTAGTCTTTCCATGTATGGTTTCTGCCCTTCATCGCTTTGTTTCCTTAAACATTAGTTTTGGTTTTGCTGAGAATTTGAACTTTTAGCTTCTTTATTTGTTCTTCTAAGTGTATTTTGGAAAATGGGTATGTTCTTATTAGCGAAAAGTTCAATGAATTTGGGTGGTTGTTGCTGTTAGCTTGATGTACTGGGTATTTTCTGTTCTGTTCTTGTTTATTGGAAACCAATCTGCAGATTAGAATCAGTTTGAGGATGTAGTAGAACGTTATGTGGGTGTTTTTTGTTTGTTGTTTTTACTCTTTCTTCTCTCTAGAAATTCTCTTTGGCGTTGAGTTTTGGTTGTTTTGTAGCTACGGTATGATTCTATCTAATTGAGTTGTTGTTTTTCCTTCCTTTACCAACATGGGACTTTGGTGATGTTTTGTGAATCAATATATTTTTTGTGAGGATACGGAACTTTTTGGATGAAAAAAGACTATTGCTCCGAGATACATAGGGATACAATGAAACGAAACGTTAATAGACCATAATAAGGGAGTTAAAACATAAGCAGTAATTTAAAGCAGAAACAGAAAAGAAATTTTGTGATTCAATATTTTGATGTGTTCTTTTTTTCTTTTATGAAGGTGCATGCATTCTTTTGGAGGTGTTAATTATGTTGTTCTTAATAGTTACCTCATACCATGGCAGGCTACAGATCAAATAGAGTTCTCAATTTGAACTTAGAACTTCTTGATAGTTACATTTGAGCCACGACAGAGGCTAGATATCAAGTAGAGTTAGCGTTCAACTTAAAACTCCCTGCTACCTAAGCACTTCTTGATTGTGATCACCAAGCCGGTGAGGGTGTTGTCATGATTTTTTCTCCACAACAATAGGCATTAGACCTTCTGAACGGTTCCTGCCATTCTTATTTGTCTGATAACCTTATTATTTTCTAAATTCATATTAGAAACTCCAAACTTTTGTTCTGCAGAAGTTTTACCACTTGGGTATTTGTCATTTTTTCAAGATCTTTACAAAAATCTAATTTGTGTCCCGTCATCTCTAGTTGTACTTGTTCTATCCTTGATGGATTGTTAGGAAAGAGCTTTGAAATCTCATTTTCCTTTCGTTTGTCAAATATAATGGCATGTTGATTATTTTTATTCGAAGAAAAAATAAATTGATGATATTCCCATACTTTGGCTGCAGAGTTTAA mRNA sequence ATGGTCATAGCTTCCAGAGCAAGCAGAGTCGCTGAAAAACCCTGCAAACTCTACACTCTGGACAACCCCTGCTCCCAAAATCCCTTCTTTGCAGACTCTACTTCTCTACCTACGGATTCTTCTCTGCCATTGTCTCTTCTTCAAACCCTCTTTTCACTTTCTTCTTCCGTTTCCCTTTCTGCACTCATTTTGACCTCAAATCTTCCTCACTTTTTCCCCACTCACCGACGCCGTTTCTGGTTTTCAAACGAGGAGGACTCCCTCCAGAGTAGTCTTTCCATAGTTTAA Coding sequence (CDS) ATGGTCATAGCTTCCAGAGCAAGCAGAGTCGCTGAAAAACCCTGCAAACTCTACACTCTGGACAACCCCTGCTCCCAAAATCCCTTCTTTGCAGACTCTACTTCTCTACCTACGGATTCTTCTCTGCCATTGTCTCTTCTTCAAACCCTCTTTTCACTTTCTTCTTCCGTTTCCCTTTCTGCACTCATTTTGACCTCAAATCTTCCTCACTTTTTCCCCACTCACCGACGCCGTTTCTGGTTTTCAAACGAGGAGGACTCCCTCCAGAGTAGTCTTTCCATAGTTTAA Protein sequence MVIASRASRVAEKPCKLYTLDNPCSQNPFFADSTSLPTDSSLPLSLLQTLFSLSSSVSLSALILTSNLPHFFPTHRRRFWFSNEEDSLQSSLSIV
Homology
BLAST of CaUC04G076550 vs. NCBI nr
Match: XP_022924204.1 (putative nuclease HARBI1 isoform X1 [Cucurbita moschata]) HSP 1 Score: 97.4 bits (241), Expect = 6.9e-17 Identity = 57/85 (67.06%), Postives = 64/85 (75.29%), Query Frame = 0
Query: 14 PCKLYTLDNPCSQNPFF----ADSTSLPTDSSLPLSLLQTLFSLSSSVSLSALILTSNLP 73
P KL TLDNPC QNP F A STSLPTD +L LSLLQT FSLSSS+SL+ALILTS L
Sbjct: 11 PAKLNTLDNPCFQNPSFTQNIAGSTSLPTDYTLSLSLLQTPFSLSSSISLNALILTSTLS 70
Query: 74 HFFPTHRRRFWFSNEEDSLQSSLSI 95
F THRRRFWF ED+L S+L++
Sbjct: 71 P-FATHRRRFWFPKHEDALHSTLTL 94
BLAST of CaUC04G076550 vs. NCBI nr
Match: KAG6584315.1 (Vacuolar protein sorting-associated protein 26C, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 87.4 bits (215), Expect = 7.1e-14 Identity = 51/71 (71.83%), Postives = 57/71 (80.28%), Query Frame = 0
Query: 2 VIASRASRVAEKPCKLYTLDNPCSQNPFF----ADSTSLPTDSSLPLSLLQTLFSLSSSV 61
++ RA+RVAEKPCKL TLDNPC QNP F A STSLPTD +L LSLLQT FSLSSS+
Sbjct: 312 LLRCRANRVAEKPCKLNTLDNPCFQNPSFTQNIAGSTSLPTDYTLSLSLLQTPFSLSSSI 371
Query: 62 SLSALILTSNL 69
SL+ALILTS L
Sbjct: 372 SLNALILTSTL 382
BLAST of CaUC04G076550 vs. ExPASy TrEMBL
Match: A0A6J1E8H3 (putative nuclease HARBI1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111431723 PE=3 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 3.3e-17 Identity = 57/85 (67.06%), Postives = 64/85 (75.29%), Query Frame = 0
Query: 14 PCKLYTLDNPCSQNPFF----ADSTSLPTDSSLPLSLLQTLFSLSSSVSLSALILTSNLP 73
P KL TLDNPC QNP F A STSLPTD +L LSLLQT FSLSSS+SL+ALILTS L
Sbjct: 11 PAKLNTLDNPCFQNPSFTQNIAGSTSLPTDYTLSLSLLQTPFSLSSSISLNALILTSTLS 70
Query: 74 HFFPTHRRRFWFSNEEDSLQSSLSI 95
F THRRRFWF ED+L S+L++
Sbjct: 71 P-FATHRRRFWFPKHEDALHSTLTL 94
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022924204.1 | 6.9e-17 | 67.06 | putative nuclease HARBI1 isoform X1 [Cucurbita moschata] | [more] |
| KAG6584315.1 | 7.1e-14 | 71.83 | Vacuolar protein sorting-associated protein 26C, partial [Cucurbita argyrosperma... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1E8H3 | 3.3e-17 | 67.06 | putative nuclease HARBI1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11143172... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
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