CaUC04G076550.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G076550.1
Type	mRNA
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Unknown protein
Location	Ciama_Chr04: 25865003 .. 25868119 (-)
Sequence length	288
RNA-Seq Expression	CaUC04G076550.1
Synteny	CaUC04G076550.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCATAGCTTCCAGGTATTTAAAATCAAAGCATCTTGGGATAAACTTCTACCACCAAGGTCAGCTCGACGTAGGTGATCACAGAGCACCTAGTCGAGCCCACCCATTTGACCATCAGGGCTCCATGTAGCCTCGGTATTTATCTTCCAAGCGTTATGGGGGAGAAGGTATCATCCAAAGGGAGTCATGATGCGACTAGACTTACCACTCCCCATTGGGGCCTTATCAGAAAAGCATGGGAGTAGCCAAATCCAGATGTCTAGCAATATTACCACTCCCCATTGGGGCCTTAGAAGGGTCTTTTTTGTAGCCTATCTGCCAAGCAATAAGAACACCCTTATCCCTATCTTAGATTGTAAAAAAGCCATGCCCAAAAATCTTGATCACTCTAACAAATCCTGATATCACATAAAACATCAATCTTAGTGGCAAGAAAATGAGGCCAAATCTCCTAAAAAACAGGACATTTCCACAAAAGAGTGGTTAGTTGATTCCTCGCCCCTTCTGCATAACACACATTTAAAACATCGATGTCCTTTTTAGCTAAATTAGTCTTATTTGGAACAAAATCATGAATAAGTTTCCAAAAACAAATCTTTGCCTTTTGTGGGGTCTTAACCCTCCAAAAAGCTTTCCATAATTACTTTTACCTATCATCGTTAGAAGAACATGCATCGTTCATACAATCAATCTGCAAGTAAAGAAAATAAGCACTTTTAACCGTAAATGCTCCCTTTGGATTTAGACCTCAAATAATTTCATTGTAGCGATGCTTTGGTAAAGAAATTTGAAAATTGGCAAGGGAATGCCTCAACATCCTCTTAACATCTTTATGTTTTAGTCCATATATTTAAAGTTTTAATATAAAGTCTAATGTATTGGAAAAGTTTTAAAAGTTCAAGGAAAAAGACAAAGCAAGAGACTAAAGTAGGTTTAACCTATTTGGCTAAAACTGAAATTAAAGATAAAATGAATACCTTAAAAGTATACATCACTTTAAAAACATACGATAAACAAAACCTGAAATGTAAACAAAACCTGACAAGTGCAAAGTAATACATTTAGATGACGACAGTAATTCAAGAAAATAAAGGGAAAAAAATATCCATTTTTGTCTCTAAGCTCTGGGACCACTCGATAACGACTTATGATTATTTTTCGGTTAAAAAACAAACTCAATATCATATAAATAAAATTATTCTAATCCCGATAAAGTAGAAATTAATATATAATTTCCTAAACAAGTAAAGGAAAAATAGAAGTTAGACAAAAAGATAAAAAAGAATCCATGCAAGTCGTTAAAAAACACTACTATTCATTTTGATTTCACCATTCCTTGTCAATATACATTAGCTTTTGCATTTAAATAAGTCTTATACACGTGTAAAAAATTGGATTTTTTTAAAAACAATTTTATAATAGGATTTTAGTAGAAAATTTCAAATTGAATCTTGATATTTTAATCCAGTTTTGGTGCAGAAATTGATTTTTTCTCAAGAAAGAAGGAAAAAAAAAAAAAGAAAAAAAAAAAAGAAAAAGAAAAATGGGCTTCTTCCTCATGCTCTTAGTCTGTGGTGGGCTTTCCAAAGGAAACGGACTACCATTTATAAGCAAAACCAAAAACACTATGATTAAGTTACCATAAAAATTCACCAATGGCAGAGCAAGCAGAGTCGCTGAAAAACCCTGCAAACTCTACACTCTGGACAACCCCTGCTCCCAAAATCCCTTCTTTGCAGACTCTACTTCTCTACCTACGGATTCTTCTCTGCCATTGTCTCTTCTTCAAACCCTCTTTTCACTTTCTTCTTCCGTTTCCCTTTCTGCACTCATTTTGACCTCAAATCTTCCTCACTTTTTCCCCACTCACCGACGCCGTTTCTGGTTTTCAAACGAGGAGGACTCCCTCCAGAGTAGTCTTTCCATGTATGGTTTCTGCCCTTCATCGCTTTGTTTCCTTAAACATTAGTTTTGGTTTTGCTGAGAATTTGAACTTTTAGCTTCTTTATTTGTTCTTCTAAGTGTATTTTGGAAAATGGGTATGTTCTTATTAGCGAAAAGTTCAATGAATTTGGGTGGTTGTTGCTGTTAGCTTGATGTACTGGGTATTTTCTGTTCTGTTCTTGTTTATTGGAAACCAATCTGCAGATTAGAATCAGTTTGAGGATGTAGTAGAACGTTATGTGGGTGTTTTTTGTTTGTTGTTTTTACTCTTTCTTCTCTCTAGAAATTCTCTTTGGCGTTGAGTTTTGGTTGTTTTGTAGCTACGGTATGATTCTATCTAATTGAGTTGTTGTTTTTCCTTCCTTTACCAACATGGGACTTTGGTGATGTTTTGTGAATCAATATATTTTTTGTGAGGATACGGAACTTTTTGGATGAAAAAAGACTATTGCTCCGAGATACATAGGGATACAATGAAACGAAACGTTAATAGACCATAATAAGGGAGTTAAAACATAAGCAGTAATTTAAAGCAGAAACAGAAAAGAAATTTTGTGATTCAATATTTTGATGTGTTCTTTTTTTCTTTTATGAAGGTGCATGCATTCTTTTGGAGGTGTTAATTATGTTGTTCTTAATAGTTACCTCATACCATGGCAGGCTACAGATCAAATAGAGTTCTCAATTTGAACTTAGAACTTCTTGATAGTTACATTTGAGCCACGACAGAGGCTAGATATCAAGTAGAGTTAGCGTTCAACTTAAAACTCCCTGCTACCTAAGCACTTCTTGATTGTGATCACCAAGCCGGTGAGGGTGTTGTCATGATTTTTTCTCCACAACAATAGGCATTAGACCTTCTGAACGGTTCCTGCCATTCTTATTTGTCTGATAACCTTATTATTTTCTAAATTCATATTAGAAACTCCAAACTTTTGTTCTGCAGAAGTTTTACCACTTGGGTATTTGTCATTTTTTCAAGATCTTTACAAAAATCTAATTTGTGTCCCGTCATCTCTAGTTGTACTTGTTCTATCCTTGATGGATTGTTAGGAAAGAGCTTTGAAATCTCATTTTCCTTTCGTTTGTCAAATATAATGGCATGTTGATTATTTTTATTCGAAGAAAAAATAAATTGATGATATTCCCATACTTTGGCTGCAGAGTTTAA

mRNA sequence

ATGGTCATAGCTTCCAGAGCAAGCAGAGTCGCTGAAAAACCCTGCAAACTCTACACTCTGGACAACCCCTGCTCCCAAAATCCCTTCTTTGCAGACTCTACTTCTCTACCTACGGATTCTTCTCTGCCATTGTCTCTTCTTCAAACCCTCTTTTCACTTTCTTCTTCCGTTTCCCTTTCTGCACTCATTTTGACCTCAAATCTTCCTCACTTTTTCCCCACTCACCGACGCCGTTTCTGGTTTTCAAACGAGGAGGACTCCCTCCAGAGTAGTCTTTCCATAGTTTAA

Coding sequence (CDS)

ATGGTCATAGCTTCCAGAGCAAGCAGAGTCGCTGAAAAACCCTGCAAACTCTACACTCTGGACAACCCCTGCTCCCAAAATCCCTTCTTTGCAGACTCTACTTCTCTACCTACGGATTCTTCTCTGCCATTGTCTCTTCTTCAAACCCTCTTTTCACTTTCTTCTTCCGTTTCCCTTTCTGCACTCATTTTGACCTCAAATCTTCCTCACTTTTTCCCCACTCACCGACGCCGTTTCTGGTTTTCAAACGAGGAGGACTCCCTCCAGAGTAGTCTTTCCATAGTTTAA

Protein sequence

MVIASRASRVAEKPCKLYTLDNPCSQNPFFADSTSLPTDSSLPLSLLQTLFSLSSSVSLSALILTSNLPHFFPTHRRRFWFSNEEDSLQSSLSIV

Homology

[Close]

BLAST of CaUC04G076550.1 vs. NCBI nr
Match: XP_022924204.1 (putative nuclease HARBI1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 97.4 bits (241), Expect = 6.9e-17
Identity = 57/85 (67.06%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 14 PCKLYTLDNPCSQNPFF----ADSTSLPTDSSLPLSLLQTLFSLSSSVSLSALILTSNLP 73
          P KL TLDNPC QNP F    A STSLPTD +L LSLLQT FSLSSS+SL+ALILTS L 
Sbjct: 11 PAKLNTLDNPCFQNPSFTQNIAGSTSLPTDYTLSLSLLQTPFSLSSSISLNALILTSTLS 70

Query: 74 HFFPTHRRRFWFSNEEDSLQSSLSI 95
            F THRRRFWF   ED+L S+L++
Sbjct: 71 P-FATHRRRFWFPKHEDALHSTLTL 94

[Close]

BLAST of CaUC04G076550.1 vs. NCBI nr
Match: KAG6584315.1 (Vacuolar protein sorting-associated protein 26C, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.4 bits (215), Expect = 7.1e-14
Identity = 51/71 (71.83%), Postives = 57/71 (80.28%), Query Frame = 0


Query: 2   VIASRASRVAEKPCKLYTLDNPCSQNPFF----ADSTSLPTDSSLPLSLLQTLFSLSSSV 61
           ++  RA+RVAEKPCKL TLDNPC QNP F    A STSLPTD +L LSLLQT FSLSSS+
Sbjct: 312 LLRCRANRVAEKPCKLNTLDNPCFQNPSFTQNIAGSTSLPTDYTLSLSLLQTPFSLSSSI 371

Query: 62  SLSALILTSNL 69
           SL+ALILTS L
Sbjct: 372 SLNALILTSTL 382

[Close]

BLAST of CaUC04G076550.1 vs. ExPASy TrEMBL
Match: A0A6J1E8H3 (putative nuclease HARBI1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111431723 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.3e-17
Identity = 57/85 (67.06%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 14 PCKLYTLDNPCSQNPFF----ADSTSLPTDSSLPLSLLQTLFSLSSSVSLSALILTSNLP 73
          P KL TLDNPC QNP F    A STSLPTD +L LSLLQT FSLSSS+SL+ALILTS L 
Sbjct: 11 PAKLNTLDNPCFQNPSFTQNIAGSTSLPTDYTLSLSLLQTPFSLSSSISLNALILTSTLS 70

Query: 74 HFFPTHRRRFWFSNEEDSLQSSLSI 95
            F THRRRFWF   ED+L S+L++
Sbjct: 71 P-FATHRRRFWFPKHEDALHSTLTL 94

The following BLAST results are available for this feature:

BLAST of CaUC04G076550.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022924204.1	6.9e-17	67.06	putative nuclease HARBI1 isoform X1 [Cucurbita moschata]	[more]
KAG6584315.1	7.1e-14	71.83	Vacuolar protein sorting-associated protein 26C, partial [Cucurbita argyrosperma...	[more]

BLAST of CaUC04G076550.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC04G076550.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E8H3	3.3e-17	67.06	putative nuclease HARBI1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11143172...	[more]

BLAST of CaUC04G076550.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CaUC04G076550	CaUC04G076550	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC04G076550.1-exon	CaUC04G076550.1-exon-Ciama_Chr04:25865003..25865009	exon
CaUC04G076550.1-exon	CaUC04G076550.1-exon-Ciama_Chr04:25866192..25866455	exon
CaUC04G076550.1-exon	CaUC04G076550.1-exon-Ciama_Chr04:25868103..25868119	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC04G076550.1-cds	CaUC04G076550.1-cds-Ciama_Chr04:25865003..25865009	CDS
CaUC04G076550.1-cds	CaUC04G076550.1-cds-Ciama_Chr04:25866192..25866455	CDS
CaUC04G076550.1-cds	CaUC04G076550.1-cds-Ciama_Chr04:25868103..25868119	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CaUC04G076550.1	CaUC04G076550.1-protein	polypeptide