CaUC04G076550 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC04G076550
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr04: 25865003 .. 25868119 (-)
RNA-Seq ExpressionCaUC04G076550
SyntenyCaUC04G076550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCATAGCTTCCAGGTATTTAAAATCAAAGCATCTTGGGATAAACTTCTACCACCAAGGTCAGCTCGACGTAGGTGATCACAGAGCACCTAGTCGAGCCCACCCATTTGACCATCAGGGCTCCATGTAGCCTCGGTATTTATCTTCCAAGCGTTATGGGGGAGAAGGTATCATCCAAAGGGAGTCATGATGCGACTAGACTTACCACTCCCCATTGGGGCCTTATCAGAAAAGCATGGGAGTAGCCAAATCCAGATGTCTAGCAATATTACCACTCCCCATTGGGGCCTTAGAAGGGTCTTTTTTGTAGCCTATCTGCCAAGCAATAAGAACACCCTTATCCCTATCTTAGATTGTAAAAAAGCCATGCCCAAAAATCTTGATCACTCTAACAAATCCTGATATCACATAAAACATCAATCTTAGTGGCAAGAAAATGAGGCCAAATCTCCTAAAAAACAGGACATTTCCACAAAAGAGTGGTTAGTTGATTCCTCGCCCCTTCTGCATAACACACATTTAAAACATCGATGTCCTTTTTAGCTAAATTAGTCTTATTTGGAACAAAATCATGAATAAGTTTCCAAAAACAAATCTTTGCCTTTTGTGGGGTCTTAACCCTCCAAAAAGCTTTCCATAATTACTTTTACCTATCATCGTTAGAAGAACATGCATCGTTCATACAATCAATCTGCAAGTAAAGAAAATAAGCACTTTTAACCGTAAATGCTCCCTTTGGATTTAGACCTCAAATAATTTCATTGTAGCGATGCTTTGGTAAAGAAATTTGAAAATTGGCAAGGGAATGCCTCAACATCCTCTTAACATCTTTATGTTTTAGTCCATATATTTAAAGTTTTAATATAAAGTCTAATGTATTGGAAAAGTTTTAAAAGTTCAAGGAAAAAGACAAAGCAAGAGACTAAAGTAGGTTTAACCTATTTGGCTAAAACTGAAATTAAAGATAAAATGAATACCTTAAAAGTATACATCACTTTAAAAACATACGATAAACAAAACCTGAAATGTAAACAAAACCTGACAAGTGCAAAGTAATACATTTAGATGACGACAGTAATTCAAGAAAATAAAGGGAAAAAAATATCCATTTTTGTCTCTAAGCTCTGGGACCACTCGATAACGACTTATGATTATTTTTCGGTTAAAAAACAAACTCAATATCATATAAATAAAATTATTCTAATCCCGATAAAGTAGAAATTAATATATAATTTCCTAAACAAGTAAAGGAAAAATAGAAGTTAGACAAAAAGATAAAAAAGAATCCATGCAAGTCGTTAAAAAACACTACTATTCATTTTGATTTCACCATTCCTTGTCAATATACATTAGCTTTTGCATTTAAATAAGTCTTATACACGTGTAAAAAATTGGATTTTTTTAAAAACAATTTTATAATAGGATTTTAGTAGAAAATTTCAAATTGAATCTTGATATTTTAATCCAGTTTTGGTGCAGAAATTGATTTTTTCTCAAGAAAGAAGGAAAAAAAAAAAAAGAAAAAAAAAAAAGAAAAAGAAAAATGGGCTTCTTCCTCATGCTCTTAGTCTGTGGTGGGCTTTCCAAAGGAAACGGACTACCATTTATAAGCAAAACCAAAAACACTATGATTAAGTTACCATAAAAATTCACCAATGGCAGAGCAAGCAGAGTCGCTGAAAAACCCTGCAAACTCTACACTCTGGACAACCCCTGCTCCCAAAATCCCTTCTTTGCAGACTCTACTTCTCTACCTACGGATTCTTCTCTGCCATTGTCTCTTCTTCAAACCCTCTTTTCACTTTCTTCTTCCGTTTCCCTTTCTGCACTCATTTTGACCTCAAATCTTCCTCACTTTTTCCCCACTCACCGACGCCGTTTCTGGTTTTCAAACGAGGAGGACTCCCTCCAGAGTAGTCTTTCCATGTATGGTTTCTGCCCTTCATCGCTTTGTTTCCTTAAACATTAGTTTTGGTTTTGCTGAGAATTTGAACTTTTAGCTTCTTTATTTGTTCTTCTAAGTGTATTTTGGAAAATGGGTATGTTCTTATTAGCGAAAAGTTCAATGAATTTGGGTGGTTGTTGCTGTTAGCTTGATGTACTGGGTATTTTCTGTTCTGTTCTTGTTTATTGGAAACCAATCTGCAGATTAGAATCAGTTTGAGGATGTAGTAGAACGTTATGTGGGTGTTTTTTGTTTGTTGTTTTTACTCTTTCTTCTCTCTAGAAATTCTCTTTGGCGTTGAGTTTTGGTTGTTTTGTAGCTACGGTATGATTCTATCTAATTGAGTTGTTGTTTTTCCTTCCTTTACCAACATGGGACTTTGGTGATGTTTTGTGAATCAATATATTTTTTGTGAGGATACGGAACTTTTTGGATGAAAAAAGACTATTGCTCCGAGATACATAGGGATACAATGAAACGAAACGTTAATAGACCATAATAAGGGAGTTAAAACATAAGCAGTAATTTAAAGCAGAAACAGAAAAGAAATTTTGTGATTCAATATTTTGATGTGTTCTTTTTTTCTTTTATGAAGGTGCATGCATTCTTTTGGAGGTGTTAATTATGTTGTTCTTAATAGTTACCTCATACCATGGCAGGCTACAGATCAAATAGAGTTCTCAATTTGAACTTAGAACTTCTTGATAGTTACATTTGAGCCACGACAGAGGCTAGATATCAAGTAGAGTTAGCGTTCAACTTAAAACTCCCTGCTACCTAAGCACTTCTTGATTGTGATCACCAAGCCGGTGAGGGTGTTGTCATGATTTTTTCTCCACAACAATAGGCATTAGACCTTCTGAACGGTTCCTGCCATTCTTATTTGTCTGATAACCTTATTATTTTCTAAATTCATATTAGAAACTCCAAACTTTTGTTCTGCAGAAGTTTTACCACTTGGGTATTTGTCATTTTTTCAAGATCTTTACAAAAATCTAATTTGTGTCCCGTCATCTCTAGTTGTACTTGTTCTATCCTTGATGGATTGTTAGGAAAGAGCTTTGAAATCTCATTTTCCTTTCGTTTGTCAAATATAATGGCATGTTGATTATTTTTATTCGAAGAAAAAATAAATTGATGATATTCCCATACTTTGGCTGCAGAGTTTAA

mRNA sequence

ATGGTCATAGCTTCCAGAGCAAGCAGAGTCGCTGAAAAACCCTGCAAACTCTACACTCTGGACAACCCCTGCTCCCAAAATCCCTTCTTTGCAGACTCTACTTCTCTACCTACGGATTCTTCTCTGCCATTGTCTCTTCTTCAAACCCTCTTTTCACTTTCTTCTTCCGTTTCCCTTTCTGCACTCATTTTGACCTCAAATCTTCCTCACTTTTTCCCCACTCACCGACGCCGTTTCTGGTTTTCAAACGAGGAGGACTCCCTCCAGAGTAGTCTTTCCATAGTTTAA

Coding sequence (CDS)

ATGGTCATAGCTTCCAGAGCAAGCAGAGTCGCTGAAAAACCCTGCAAACTCTACACTCTGGACAACCCCTGCTCCCAAAATCCCTTCTTTGCAGACTCTACTTCTCTACCTACGGATTCTTCTCTGCCATTGTCTCTTCTTCAAACCCTCTTTTCACTTTCTTCTTCCGTTTCCCTTTCTGCACTCATTTTGACCTCAAATCTTCCTCACTTTTTCCCCACTCACCGACGCCGTTTCTGGTTTTCAAACGAGGAGGACTCCCTCCAGAGTAGTCTTTCCATAGTTTAA

Protein sequence

MVIASRASRVAEKPCKLYTLDNPCSQNPFFADSTSLPTDSSLPLSLLQTLFSLSSSVSLSALILTSNLPHFFPTHRRRFWFSNEEDSLQSSLSIV
Homology
[Close]
BLAST of CaUC04G076550 vs. NCBI nr
Match: XP_022924204.1 (putative nuclease HARBI1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 97.4 bits (241), Expect = 6.9e-17
Identity = 57/85 (67.06%), Postives = 64/85 (75.29%), Query Frame = 0 

Query: 14 PCKLYTLDNPCSQNPFF----ADSTSLPTDSSLPLSLLQTLFSLSSSVSLSALILTSNLP 73
          P KL TLDNPC QNP F    A STSLPTD +L LSLLQT FSLSSS+SL+ALILTS L 
Sbjct: 11 PAKLNTLDNPCFQNPSFTQNIAGSTSLPTDYTLSLSLLQTPFSLSSSISLNALILTSTLS 70

Query: 74 HFFPTHRRRFWFSNEEDSLQSSLSI 95
            F THRRRFWF   ED+L S+L++
Sbjct: 71 P-FATHRRRFWFPKHEDALHSTLTL 94

[Close]
BLAST of CaUC04G076550 vs. NCBI nr
Match: KAG6584315.1 (Vacuolar protein sorting-associated protein 26C, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.4 bits (215), Expect = 7.1e-14
Identity = 51/71 (71.83%), Postives = 57/71 (80.28%), Query Frame = 0 

Query: 2   VIASRASRVAEKPCKLYTLDNPCSQNPFF----ADSTSLPTDSSLPLSLLQTLFSLSSSV 61
           ++  RA+RVAEKPCKL TLDNPC QNP F    A STSLPTD +L LSLLQT FSLSSS+
Sbjct: 312 LLRCRANRVAEKPCKLNTLDNPCFQNPSFTQNIAGSTSLPTDYTLSLSLLQTPFSLSSSI 371

Query: 62  SLSALILTSNL 69
           SL+ALILTS L
Sbjct: 372 SLNALILTSTL 382

[Close]
BLAST of CaUC04G076550 vs. ExPASy TrEMBL
Match: A0A6J1E8H3 (putative nuclease HARBI1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111431723 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.3e-17
Identity = 57/85 (67.06%), Postives = 64/85 (75.29%), Query Frame = 0 

Query: 14 PCKLYTLDNPCSQNPFF----ADSTSLPTDSSLPLSLLQTLFSLSSSVSLSALILTSNLP 73
          P KL TLDNPC QNP F    A STSLPTD +L LSLLQT FSLSSS+SL+ALILTS L 
Sbjct: 11 PAKLNTLDNPCFQNPSFTQNIAGSTSLPTDYTLSLSLLQTPFSLSSSISLNALILTSTLS 70

Query: 74 HFFPTHRRRFWFSNEEDSLQSSLSI 95
            F THRRRFWF   ED+L S+L++
Sbjct: 71 P-FATHRRRFWFPKHEDALHSTLTL 94

The following BLAST results are available for this feature:
BLAST of CaUC04G076550 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022924204.16.9e-1767.06putative nuclease HARBI1 isoform X1 [Cucurbita moschata][more]
KAG6584315.17.1e-1471.83Vacuolar protein sorting-associated protein 26C, partial [Cucurbita argyrosperma... [more]
BLAST of CaUC04G076550 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC04G076550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E8H33.3e-1767.06putative nuclease HARBI1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11143172... [more]
BLAST of CaUC04G076550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC04G076550.1CaUC04G076550.1mRNA