Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTGCGTTCAAACCCTACTGCAACCCTCTCTCTTCTTCTTTTCTCCTCTTTCTTCTTCCCTCTCTTTGCCTCCGTTCAGGTATTCATCTTACATTTCTCTTCTCTTTTGTTTTTTTATGGCGTTCTTAATGGGGTTTGATTTTTATTGCTTCTTTGGTGTTTTTCAGGTGTATTCTGCGGAAGTGGAGAAAGATGACTTGGATGGACCTAAAGATCTCGGTCGATGTAGCAAGGTCAGTACGATTCCTTGTCGGCCATGGCTAGAGGTTGGTTTGGGGTTATATTGAGATTGAGATCTTTGTGCTTTTTGACTTAATAGTTTTCCTTCTTGTACATTGTTAATAGAAC
mRNA sequence
ATGGGTTTGCGTTCAAACCCTACTGCAACCCTCTCTCTTCTTCTTTTCTCCTCTTTCTTCTTCCCTCTCTTTGCCTCCGTTCAGGTGTATTCTGCGGAAGTGGAGAAAGATGACTTGGATGGACCTAAAGATCTCGGTCGATGTAGCAAGGTCAGTACGATTCCTTGTCGGCCATGGCTAGAGGTTGGTTTGGGGTTATATTGAGATTGAGATCTTTGTGCTTTTTGACTTAATAGTTTTCCTTCTTGTACATTGTTAATAGAAC
Coding sequence (CDS)
ATGGGTTTGCGTTCAAACCCTACTGCAACCCTCTCTCTTCTTCTTTTCTCCTCTTTCTTCTTCCCTCTCTTTGCCTCCGTTCAGGTGTATTCTGCGGAAGTGGAGAAAGATGACTTGGATGGACCTAAAGATCTCGGTCGATGTAGCAAGGTCAGTACGATTCCTTGTCGGCCATGGCTAGAGGTTGGTTTGGGGTTATATTGA
Protein sequence
MGLRSNPTATLSLLLFSSFFFPLFASVQVYSAEVEKDDLDGPKDLGRCSKVSTIPCRPWLEVGLGLY*
Homology
BLAST of CSPI07G13880 vs. ExPASy TrEMBL
Match:
A0A0A0K4H3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336440 PE=4 SV=1)
HSP 1 Score: 99.0 bits (245), Expect = 8.2e-18
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 0
Query: 1 MGLRSNPTATLSLLLF-SSFFFPLFASVQVYSAEVEKDDLDGPKDLGRCSKVS 53
MGLRSNPTATLSLLLF SSFFFPLFASVQVYSAEVEKDDLDGPKDLGRCSK S
Sbjct: 1 MGLRSNPTATLSLLLFSSSFFFPLFASVQVYSAEVEKDDLDGPKDLGRCSKFS 53
BLAST of CSPI07G13880 vs. ExPASy TrEMBL
Match:
A0A0A0LMQ4 (GDT1 family protein OS=Cucumis sativus OX=3659 GN=Csa_2G074220 PE=3 SV=1)
HSP 1 Score: 73.9 bits (180), Expect = 2.8e-10
Identity = 41/55 (74.55%), Postives = 42/55 (76.36%), Query Frame = 0
Query: 1 MGLRSNPTATLSL---LLFSSFFFPLFASVQVYSAEVEKDDLDGPKDLGRCSKVS 53
MGLRSNPTATLS L F LFAS QVYSAEVEKDDLDGPKDLGR SK+S
Sbjct: 1 MGLRSNPTATLSFSASFLLFLLFLSLFASHQVYSAEVEKDDLDGPKDLGRRSKMS 55
BLAST of CSPI07G13880 vs. ExPASy TrEMBL
Match:
A0A5A7U3P6 (GDT1 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00130 PE=3 SV=1)
HSP 1 Score: 70.1 bits (170), Expect = 4.1e-09
Identity = 37/55 (67.27%), Postives = 40/55 (72.73%), Query Frame = 0
Query: 1 MGLRSNPTATLSL---LLFSSFFFPLFASVQVYSAEVEKDDLDGPKDLGRCSKVS 53
MGLRSNPT TLS L LFAS+QVYSAE EKD+LDGPKDLGR SK+S
Sbjct: 1 MGLRSNPTTTLSFSPSFLLFLLLLSLFASIQVYSAEAEKDELDGPKDLGRRSKIS 55
BLAST of CSPI07G13880 vs. ExPASy TrEMBL
Match:
A0A1S3B4E3 (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucumis melo OX=3656 GN=LOC103485889 PE=3 SV=1)
HSP 1 Score: 70.1 bits (170), Expect = 4.1e-09
Identity = 37/55 (67.27%), Postives = 40/55 (72.73%), Query Frame = 0
Query: 1 MGLRSNPTATLSL---LLFSSFFFPLFASVQVYSAEVEKDDLDGPKDLGRCSKVS 53
MGLRSNPT TLS L LFAS+QVYSAE EKD+LDGPKDLGR SK+S
Sbjct: 1 MGLRSNPTTTLSFSPSFLLFLLLLSLFASIQVYSAEAEKDELDGPKDLGRRSKIS 55
BLAST of CSPI07G13880 vs. ExPASy TrEMBL
Match:
A0A6J1KA70 (putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucurbita maxima OX=3661 GN=LOC111492492 PE=3 SV=1)
HSP 1 Score: 68.9 bits (167), Expect = 9.1e-09
Identity = 37/55 (67.27%), Postives = 41/55 (74.55%), Query Frame = 0
Query: 1 MGLRSNPTATLSL---LLFSSFFFPLFASVQVYSAEVEKDDLDGPKDLGRCSKVS 53
MGLRSNPT LS L+ LFASVQVYSAEVEK++LDGPKDLGR SK+S
Sbjct: 1 MGLRSNPTGNLSFSPSLILLLLLVSLFASVQVYSAEVEKEELDGPKDLGRRSKIS 55
BLAST of CSPI07G13880 vs. NCBI nr
Match:
KAE8646234.1 (hypothetical protein Csa_016443 [Cucumis sativus])
HSP 1 Score: 135.6 bits (340), Expect = 1.6e-28
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0
Query: 1 MGLRSNPTATLSLLLF-SSFFFPLFASVQVYSAEVEKDDLDGPKDLGRCSKVSTIPCRPW 60
MGLRSNPTATLSLLLF SSFFFPLFASVQVYSAEVEKD+LDGPKDLGRCSKVSTIPCRPW
Sbjct: 1 MGLRSNPTATLSLLLFSSSFFFPLFASVQVYSAEVEKDELDGPKDLGRCSKVSTIPCRPW 60
Query: 61 LEVGLGLY 68
LEVGLGLY
Sbjct: 61 LEVGLGLY 68
BLAST of CSPI07G13880 vs. NCBI nr
Match:
KGN61261.1 (hypothetical protein Csa_006241 [Cucumis sativus])
HSP 1 Score: 73.9 bits (180), Expect = 5.8e-10
Identity = 41/55 (74.55%), Postives = 42/55 (76.36%), Query Frame = 0
Query: 1 MGLRSNPTATLSL---LLFSSFFFPLFASVQVYSAEVEKDDLDGPKDLGRCSKVS 53
MGLRSNPTATLS L F LFAS QVYSAEVEKDDLDGPKDLGR SK+S
Sbjct: 1 MGLRSNPTATLSFSASFLLFLLFLSLFASHQVYSAEVEKDDLDGPKDLGRRSKMS 55
BLAST of CSPI07G13880 vs. NCBI nr
Match:
XP_011648996.1 (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330 [Cucumis sativus])
HSP 1 Score: 73.9 bits (180), Expect = 5.8e-10
Identity = 41/55 (74.55%), Postives = 42/55 (76.36%), Query Frame = 0
Query: 1 MGLRSNPTATLSL---LLFSSFFFPLFASVQVYSAEVEKDDLDGPKDLGRCSKVS 53
MGLRSNPTATLS L F LFAS QVYSAEVEKDDLDGPKDLGR SK+S
Sbjct: 1 MGLRSNPTATLSFSASFLLFLLFLSLFASHQVYSAEVEKDDLDGPKDLGRRSKMS 55
BLAST of CSPI07G13880 vs. NCBI nr
Match:
XP_038889550.1 (GDT1-like protein 4 [Benincasa hispida])
HSP 1 Score: 71.6 bits (174), Expect = 2.9e-09
Identity = 41/58 (70.69%), Postives = 44/58 (75.86%), Query Frame = 0
Query: 1 MGLRSNPTATLSLLLFSSFF------FPLFASVQVYSAEVEKDDLDGPKDLGRCSKVS 53
MGLRSNPTA LS FSS F LFAS+QVYSAEVEKD+LDGPKDLGR SK+S
Sbjct: 1 MGLRSNPTANLS---FSSSFLLLLLLLSLFASLQVYSAEVEKDELDGPKDLGRRSKIS 55
BLAST of CSPI07G13880 vs. NCBI nr
Match:
XP_008441858.1 (PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330 [Cucumis melo])
HSP 1 Score: 70.1 bits (170), Expect = 8.4e-09
Identity = 37/55 (67.27%), Postives = 40/55 (72.73%), Query Frame = 0
Query: 1 MGLRSNPTATLSL---LLFSSFFFPLFASVQVYSAEVEKDDLDGPKDLGRCSKVS 53
MGLRSNPT TLS L LFAS+QVYSAE EKD+LDGPKDLGR SK+S
Sbjct: 1 MGLRSNPTTTLSFSPSFLLFLLLLSLFASIQVYSAEAEKDELDGPKDLGRRSKIS 55
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0K4H3 | 8.2e-18 | 96.23 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336440 PE=4 SV=1 | [more] |
| A0A0A0LMQ4 | 2.8e-10 | 74.55 | GDT1 family protein OS=Cucumis sativus OX=3659 GN=Csa_2G074220 PE=3 SV=1 | [more] |
| A0A5A7U3P6 | 4.1e-09 | 67.27 | GDT1 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G... | [more] |
| A0A1S3B4E3 | 4.1e-09 | 67.27 | LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23... | [more] |
| A0A6J1KA70 | 9.1e-09 | 67.27 | putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucurbita maxi... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAE8646234.1 | 1.6e-28 | 97.06 | hypothetical protein Csa_016443 [Cucumis sativus] | [more] |
| KGN61261.1 | 5.8e-10 | 74.55 | hypothetical protein Csa_006241 [Cucumis sativus] | [more] |
| XP_011648996.1 | 5.8e-10 | 74.55 | LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23... | [more] |
| XP_038889550.1 | 2.9e-09 | 70.69 | GDT1-like protein 4 [Benincasa hispida] | [more] |
| XP_008441858.1 | 8.4e-09 | 67.27 | PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing pro... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
