CSPI07G13880.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI07G13880.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330
Location	Chr7: 12398310 .. 12398662 (+)
Sequence length	265
RNA-Seq Expression	CSPI07G13880.1
Synteny	CSPI07G13880.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGCGTTCAAACCCTACTGCAACCCTCTCTCTTCTTCTTTTCTCCTCTTTCTTCTTCCCTCTCTTTGCCTCCGTTCAGGTATTCATCTTACATTTCTCTTCTCTTTTGTTTTTTTATGGCGTTCTTAATGGGGTTTGATTTTTATTGCTTCTTTGGTGTTTTTCAGGTGTATTCTGCGGAAGTGGAGAAAGATGACTTGGATGGACCTAAAGATCTCGGTCGATGTAGCAAGGTCAGTACGATTCCTTGTCGGCCATGGCTAGAGGTTGGTTTGGGGTTATATTGAGATTGAGATCTTTGTGCTTTTTGACTTAATAGTTTTCCTTCTTGTACATTGTTAATAGAAC

mRNA sequence

ATGGGTTTGCGTTCAAACCCTACTGCAACCCTCTCTCTTCTTCTTTTCTCCTCTTTCTTCTTCCCTCTCTTTGCCTCCGTTCAGGTGTATTCTGCGGAAGTGGAGAAAGATGACTTGGATGGACCTAAAGATCTCGGTCGATGTAGCAAGGTCAGTACGATTCCTTGTCGGCCATGGCTAGAGGTTGGTTTGGGGTTATATTGAGATTGAGATCTTTGTGCTTTTTGACTTAATAGTTTTCCTTCTTGTACATTGTTAATAGAAC

Coding sequence (CDS)

ATGGGTTTGCGTTCAAACCCTACTGCAACCCTCTCTCTTCTTCTTTTCTCCTCTTTCTTCTTCCCTCTCTTTGCCTCCGTTCAGGTGTATTCTGCGGAAGTGGAGAAAGATGACTTGGATGGACCTAAAGATCTCGGTCGATGTAGCAAGGTCAGTACGATTCCTTGTCGGCCATGGCTAGAGGTTGGTTTGGGGTTATATTGA

Protein sequence

MGLRSNPTATLSLLLFSSFFFPLFASVQVYSAEVEKDDLDGPKDLGRCSKVSTIPCRPWLEVGLGLY*

Homology

[Close]

BLAST of CSPI07G13880.1 vs. ExPASy TrEMBL
Match: A0A0A0K4H3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336440 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 8.2e-18
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1  MGLRSNPTATLSLLLF-SSFFFPLFASVQVYSAEVEKDDLDGPKDLGRCSKVS 53
          MGLRSNPTATLSLLLF SSFFFPLFASVQVYSAEVEKDDLDGPKDLGRCSK S
Sbjct: 1  MGLRSNPTATLSLLLFSSSFFFPLFASVQVYSAEVEKDDLDGPKDLGRCSKFS 53

[Close]

BLAST of CSPI07G13880.1 vs. ExPASy TrEMBL
Match: A0A0A0LMQ4 (GDT1 family protein OS=Cucumis sativus OX=3659 GN=Csa_2G074220 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.8e-10
Identity = 41/55 (74.55%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 1  MGLRSNPTATLSL---LLFSSFFFPLFASVQVYSAEVEKDDLDGPKDLGRCSKVS 53
          MGLRSNPTATLS     L    F  LFAS QVYSAEVEKDDLDGPKDLGR SK+S
Sbjct: 1  MGLRSNPTATLSFSASFLLFLLFLSLFASHQVYSAEVEKDDLDGPKDLGRRSKMS 55

[Close]

BLAST of CSPI07G13880.1 vs. ExPASy TrEMBL
Match: A0A5A7U3P6 (GDT1 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00130 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.1e-09
Identity = 37/55 (67.27%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 1  MGLRSNPTATLSL---LLFSSFFFPLFASVQVYSAEVEKDDLDGPKDLGRCSKVS 53
          MGLRSNPT TLS     L       LFAS+QVYSAE EKD+LDGPKDLGR SK+S
Sbjct: 1  MGLRSNPTTTLSFSPSFLLFLLLLSLFASIQVYSAEAEKDELDGPKDLGRRSKIS 55

[Close]

BLAST of CSPI07G13880.1 vs. ExPASy TrEMBL
Match: A0A1S3B4E3 (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucumis melo OX=3656 GN=LOC103485889 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.1e-09
Identity = 37/55 (67.27%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 1  MGLRSNPTATLSL---LLFSSFFFPLFASVQVYSAEVEKDDLDGPKDLGRCSKVS 53
          MGLRSNPT TLS     L       LFAS+QVYSAE EKD+LDGPKDLGR SK+S
Sbjct: 1  MGLRSNPTTTLSFSPSFLLFLLLLSLFASIQVYSAEAEKDELDGPKDLGRRSKIS 55

[Close]

BLAST of CSPI07G13880.1 vs. ExPASy TrEMBL
Match: A0A6J1KA70 (putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucurbita maxima OX=3661 GN=LOC111492492 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 9.1e-09
Identity = 37/55 (67.27%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 1  MGLRSNPTATLSL---LLFSSFFFPLFASVQVYSAEVEKDDLDGPKDLGRCSKVS 53
          MGLRSNPT  LS    L+       LFASVQVYSAEVEK++LDGPKDLGR SK+S
Sbjct: 1  MGLRSNPTGNLSFSPSLILLLLLVSLFASVQVYSAEVEKEELDGPKDLGRRSKIS 55

[Close]

BLAST of CSPI07G13880.1 vs. NCBI nr
Match: KAE8646234.1 (hypothetical protein Csa_016443 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 1.6e-28
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MGLRSNPTATLSLLLF-SSFFFPLFASVQVYSAEVEKDDLDGPKDLGRCSKVSTIPCRPW 60
          MGLRSNPTATLSLLLF SSFFFPLFASVQVYSAEVEKD+LDGPKDLGRCSKVSTIPCRPW
Sbjct: 1  MGLRSNPTATLSLLLFSSSFFFPLFASVQVYSAEVEKDELDGPKDLGRCSKVSTIPCRPW 60

Query: 61 LEVGLGLY 68
          LEVGLGLY
Sbjct: 61 LEVGLGLY 68

[Close]

BLAST of CSPI07G13880.1 vs. NCBI nr
Match: KGN61261.1 (hypothetical protein Csa_006241 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 5.8e-10
Identity = 41/55 (74.55%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 1  MGLRSNPTATLSL---LLFSSFFFPLFASVQVYSAEVEKDDLDGPKDLGRCSKVS 53
          MGLRSNPTATLS     L    F  LFAS QVYSAEVEKDDLDGPKDLGR SK+S
Sbjct: 1  MGLRSNPTATLSFSASFLLFLLFLSLFASHQVYSAEVEKDDLDGPKDLGRRSKMS 55

[Close]

BLAST of CSPI07G13880.1 vs. NCBI nr
Match: XP_011648996.1 (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 5.8e-10
Identity = 41/55 (74.55%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 1  MGLRSNPTATLSL---LLFSSFFFPLFASVQVYSAEVEKDDLDGPKDLGRCSKVS 53
          MGLRSNPTATLS     L    F  LFAS QVYSAEVEKDDLDGPKDLGR SK+S
Sbjct: 1  MGLRSNPTATLSFSASFLLFLLFLSLFASHQVYSAEVEKDDLDGPKDLGRRSKMS 55

[Close]

BLAST of CSPI07G13880.1 vs. NCBI nr
Match: XP_038889550.1 (GDT1-like protein 4 [Benincasa hispida])

HSP 1 Score: 71.6 bits (174), Expect = 2.9e-09
Identity = 41/58 (70.69%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 1  MGLRSNPTATLSLLLFSSFF------FPLFASVQVYSAEVEKDDLDGPKDLGRCSKVS 53
          MGLRSNPTA LS   FSS F        LFAS+QVYSAEVEKD+LDGPKDLGR SK+S
Sbjct: 1  MGLRSNPTANLS---FSSSFLLLLLLLSLFASLQVYSAEVEKDELDGPKDLGRRSKIS 55

[Close]

BLAST of CSPI07G13880.1 vs. NCBI nr
Match: XP_008441858.1 (PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330 [Cucumis melo])

HSP 1 Score: 70.1 bits (170), Expect = 8.4e-09
Identity = 37/55 (67.27%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 1  MGLRSNPTATLSL---LLFSSFFFPLFASVQVYSAEVEKDDLDGPKDLGRCSKVS 53
          MGLRSNPT TLS     L       LFAS+QVYSAE EKD+LDGPKDLGR SK+S
Sbjct: 1  MGLRSNPTTTLSFSPSFLLFLLLLSLFASIQVYSAEAEKDELDGPKDLGRRSKIS 55

The following BLAST results are available for this feature:

BLAST of CSPI07G13880.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI07G13880.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4H3	8.2e-18	96.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336440 PE=4 SV=1	[more]
A0A0A0LMQ4	2.8e-10	74.55	GDT1 family protein OS=Cucumis sativus OX=3659 GN=Csa_2G074220 PE=3 SV=1	[more]
A0A5A7U3P6	4.1e-09	67.27	GDT1 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G...	[more]
A0A1S3B4E3	4.1e-09	67.27	LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23...	[more]
A0A6J1KA70	9.1e-09	67.27	putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucurbita maxi...	[more]

BLAST of CSPI07G13880.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646234.1	1.6e-28	97.06	hypothetical protein Csa_016443 [Cucumis sativus]	[more]
KGN61261.1	5.8e-10	74.55	hypothetical protein Csa_006241 [Cucumis sativus]	[more]
XP_011648996.1	5.8e-10	74.55	LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23...	[more]
XP_038889550.1	2.9e-09	70.69	GDT1-like protein 4 [Benincasa hispida]	[more]
XP_008441858.1	8.4e-09	67.27	PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing pro...	[more]

BLAST of CSPI07G13880.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI07G13880	CSPI07G13880	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI07G13880.1.cds1	CSPI07G13880.1.cds1	CDS
CSPI07G13880.1.cds2	CSPI07G13880.1.cds2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI07G13880.1.utr3p1	CSPI07G13880.1.utr3p1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI07G13880.1	CSPI07G13880.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070588	calcium ion transmembrane transport
biological_process	GO:0032468	Golgi calcium ion homeostasis
biological_process	GO:0032472	Golgi calcium ion transport
biological_process	GO:0071421	manganese ion transmembrane transport
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016020	membrane
molecular_function	GO:0015085	calcium ion transmembrane transporter activity
molecular_function	GO:0005384	manganese ion transmembrane transporter activity