Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTTACACAATCGTTAGCTTGTTACACTTGCAAACACCACATTAACATTATATCATCAATCGAGGAAGCATCCTTATAGTATCTTCCAATAATCAAACTCATCTCTCTTCTAGTGCTCATTTGATTCCCTTCTCACTACAACAACATCATTTATAGTCACACACCAATATAAATACCAATCCATATTTCCCCATTTACATAACAAATCAAACACACAACTTTTTCAATCATAAAAGCATGGGAAAAAACTCCAAATCCTCCACCCCCAACACCCCTTTTTGTGAGAAGTTGCTCAAAGCATTTGGAATGAGTCATCGTCCTAAAATCAACAAATTAAGTTCATCCATAAGCCACCATGAACACCATCATCATCAACAACAAAGCAACTCTTCTCAGCATATTTATGTTCATCATGAACCTGCAGTAATGGAGAAGACACACAGCTCTAAGAATAATAAATATGCAGGAGGAGATGAAGATTCTGTAAACGCTGCGTTTAGCAATTACATAAATCGAGCTAAACGAAGGCTGGAAAACATGGCGAGCAAGAAACATAGTAATGACTCGAGTAGCAGAGGTAAAGAGAATAATCTTAAAGCTGAAGATCGTCGGTTTTCGGATTATATCGTTCGTGCTCGAAATAAGCTGAGGTCTACTTCTTCAAGTGTGGGATTGGCTAAAACTAAGAGTAGCAGCTCTGTAAAGTGATGATCATAACACCCTCATAATGCTTGCTTGCTTTCTTTTGTTTTGAAGTGGTTTTGTAAACAATTAAAATCACCACAAAAGTGATTTTAGTTACTATTAATTCTTGTTTTTCTTTTTGGGTTATGGGTTTTACTTTGTTATCATTGATTATTGGCATTTGAAAGCCATATGGTGTAGTGATACATACATTACTACAAGGTCTGTAATAATTCTGCTTTACTAAGGGGGATTTAATTGTTTCTCTCATTATTAACTATATATCATTGTATACTATATTTAACATAATGTAATGTGTTCTTTTGTATTTAATAGCATGTGTGTATTACACAAATTTATTGAATACAAACATATTGAAACGGGTTTGGAGTTCTAGTCG
mRNA sequence
TTCTTACACAATCGTTAGCTTGTTACACTTGCAAACACCACATTAACATTATATCATCAATCGAGGAAGCATCCTTATAGTATCTTCCAATAATCAAACTCATCTCTCTTCTAGTGCTCATTTGATTCCCTTCTCACTACAACAACATCATTTATAGTCACACACCAATATAAATACCAATCCATATTTCCCCATTTACATAACAAATCAAACACACAACTTTTTCAATCATAAAAGCATGGGAAAAAACTCCAAATCCTCCACCCCCAACACCCCTTTTTGTGAGAAGTTGCTCAAAGCATTTGGAATGAGTCATCGTCCTAAAATCAACAAATTAAGTTCATCCATAAGCCACCATGAACACCATCATCATCAACAACAAAGCAACTCTTCTCAGCATATTTATGTTCATCATGAACCTGCAGTAATGGAGAAGACACACAGCTCTAAGAATAATAAATATGCAGGAGGAGATGAAGATTCTGTAAACGCTGCGTTTAGCAATTACATAAATCGAGCTAAACGAAGGCTGGAAAACATGGCGAGCAAGAAACATAGTAATGACTCGAGTAGCAGAGGTAAAGAGAATAATCTTAAAGCTGAAGATCGTCGGTTTTCGGATTATATCGTTCGTGCTCGAAATAAGCTGAGGTCTACTTCTTCAAGTGTGGGATTGGCTAAAACTAAGAGTAGCAGCTCTGTAAAGTGATGATCATAACACCCTCATAATGCTTGCTTGCTTTCTTTTGTTTTGAAGTGGTTTTGTAAACAATTAAAATCACCACAAAAGTGATTTTAGTTACTATTAATTCTTGTTTTTCTTTTTGGGTTATGGGTTTTACTTTGTTATCATTGATTATTGGCATTTGAAAGCCATATGGTGTAGTGATACATACATTACTACAAGGTCTGTAATAATTCTGCTTTACTAAGGGGGATTTAATTGTTTCTCTCATTATTAACTATATATCATTGTATACTATATTTAACATAATGTAATGTGTTCTTTTGTATTTAATAGCATGTGTGTATTACACAAATTTATTGAATACAAACATATTGAAACGGGTTTGGAGTTCTAGTCG
Coding sequence (CDS)
ATGGGAAAAAACTCCAAATCCTCCACCCCCAACACCCCTTTTTGTGAGAAGTTGCTCAAAGCATTTGGAATGAGTCATCGTCCTAAAATCAACAAATTAAGTTCATCCATAAGCCACCATGAACACCATCATCATCAACAACAAAGCAACTCTTCTCAGCATATTTATGTTCATCATGAACCTGCAGTAATGGAGAAGACACACAGCTCTAAGAATAATAAATATGCAGGAGGAGATGAAGATTCTGTAAACGCTGCGTTTAGCAATTACATAAATCGAGCTAAACGAAGGCTGGAAAACATGGCGAGCAAGAAACATAGTAATGACTCGAGTAGCAGAGGTAAAGAGAATAATCTTAAAGCTGAAGATCGTCGGTTTTCGGATTATATCGTTCGTGCTCGAAATAAGCTGAGGTCTACTTCTTCAAGTGTGGGATTGGCTAAAACTAAGAGTAGCAGCTCTGTAAAGTGA
Protein sequence
MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQSNSSQHIYVHHEPAVMEKTHSSKNNKYAGGDEDSVNAAFSNYINRAKRRLENMASKKHSNDSSSRGKENNLKAEDRRFSDYIVRARNKLRSTSSSVGLAKTKSSSSVK*
Homology
BLAST of CSPI06G21880 vs. ExPASy TrEMBL
Match:
A0A0A0KG94 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G409360 PE=4 SV=1)
HSP 1 Score: 290.0 bits (741), Expect = 5.8e-75
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0
Query: 1 MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQSNSSQHIYVHHE 60
MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQ NSSQHIYVHHE
Sbjct: 1 MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQRNSSQHIYVHHE 60
Query: 61 PAVMEKTHSSKNNKYAGGDEDSVNAAFSNYINRAKRRLENMASKKHSNDSSSRGKENNLK 120
PAVMEKTHSSKNNKYAGGDEDSVNAAFSNYINRAKRRLENMASKKHSNDSSSRGKENNLK
Sbjct: 61 PAVMEKTHSSKNNKYAGGDEDSVNAAFSNYINRAKRRLENMASKKHSNDSSSRGKENNLK 120
Query: 121 AEDRRFSDYIVRARNKLRSTSSSVGLAKTKSSSSVK 157
AEDRRFSDYIVRARNKLRSTSSSVGLAKTKSSSSVK
Sbjct: 121 AEDRRFSDYIVRARNKLRSTSSSVGLAKTKSSSSVK 156
BLAST of CSPI06G21880 vs. ExPASy TrEMBL
Match:
A0A5D3CQZ7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold496G00660 PE=4 SV=1)
HSP 1 Score: 232.6 bits (592), Expect = 1.1e-57
Identity = 130/155 (83.87%), Postives = 140/155 (90.32%), Query Frame = 0
Query: 1 MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQSNSSQHIYVHHE 60
MG+N KSSTPNTPFCEKLLKAFG+SHRPKINKLS S SHHE HQQQ+NSSQHIYVHHE
Sbjct: 1 MGRNPKSSTPNTPFCEKLLKAFGISHRPKINKLSPSTSHHE-QQHQQQNNSSQHIYVHHE 60
Query: 61 PAVME-KTHSSKNNKYAGGDEDSVNAAFSNYINRAKRRLENMASKKHS-NDSSSRGKENN 120
PA+ME KTHSSK+NKY GGDEDSVN FSNYINRAKRRL N+ASKKHS NDSS +GKEN+
Sbjct: 61 PAIMEIKTHSSKSNKYGGGDEDSVNDVFSNYINRAKRRLGNIASKKHSNNDSSGKGKENS 120
Query: 121 LKAEDRRFSDYIVRARNKLRSTSSSVGLAKTKSSS 154
LKAEDRRFSDYI RAR+KLR+TSSSVGL KTKSSS
Sbjct: 121 LKAEDRRFSDYIARARDKLRATSSSVGLTKTKSSS 154
BLAST of CSPI06G21880 vs. NCBI nr
Match:
KGN47879.1 (hypothetical protein Csa_004306 [Cucumis sativus])
HSP 1 Score: 290.0 bits (741), Expect = 1.2e-74
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0
Query: 1 MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQSNSSQHIYVHHE 60
MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQ NSSQHIYVHHE
Sbjct: 1 MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQRNSSQHIYVHHE 60
Query: 61 PAVMEKTHSSKNNKYAGGDEDSVNAAFSNYINRAKRRLENMASKKHSNDSSSRGKENNLK 120
PAVMEKTHSSKNNKYAGGDEDSVNAAFSNYINRAKRRLENMASKKHSNDSSSRGKENNLK
Sbjct: 61 PAVMEKTHSSKNNKYAGGDEDSVNAAFSNYINRAKRRLENMASKKHSNDSSSRGKENNLK 120
Query: 121 AEDRRFSDYIVRARNKLRSTSSSVGLAKTKSSSSVK 157
AEDRRFSDYIVRARNKLRSTSSSVGLAKTKSSSSVK
Sbjct: 121 AEDRRFSDYIVRARNKLRSTSSSVGLAKTKSSSSVK 156
BLAST of CSPI06G21880 vs. NCBI nr
Match:
KAA0057288.1 (hypothetical protein E6C27_scaffold280G001290 [Cucumis melo var. makuwa] >TYK13444.1 hypothetical protein E5676_scaffold496G00660 [Cucumis melo var. makuwa])
HSP 1 Score: 232.6 bits (592), Expect = 2.3e-57
Identity = 130/155 (83.87%), Postives = 140/155 (90.32%), Query Frame = 0
Query: 1 MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQSNSSQHIYVHHE 60
MG+N KSSTPNTPFCEKLLKAFG+SHRPKINKLS S SHHE HQQQ+NSSQHIYVHHE
Sbjct: 1 MGRNPKSSTPNTPFCEKLLKAFGISHRPKINKLSPSTSHHE-QQHQQQNNSSQHIYVHHE 60
Query: 61 PAVME-KTHSSKNNKYAGGDEDSVNAAFSNYINRAKRRLENMASKKHS-NDSSSRGKENN 120
PA+ME KTHSSK+NKY GGDEDSVN FSNYINRAKRRL N+ASKKHS NDSS +GKEN+
Sbjct: 61 PAIMEIKTHSSKSNKYGGGDEDSVNDVFSNYINRAKRRLGNIASKKHSNNDSSGKGKENS 120
Query: 121 LKAEDRRFSDYIVRARNKLRSTSSSVGLAKTKSSS 154
LKAEDRRFSDYI RAR+KLR+TSSSVGL KTKSSS
Sbjct: 121 LKAEDRRFSDYIARARDKLRATSSSVGLTKTKSSS 154
BLAST of CSPI06G21880 vs. NCBI nr
Match:
KAG6606435.1 (hypothetical protein SDJN03_03752, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 80.5 bits (197), Expect = 1.4e-11
Identity = 67/144 (46.53%), Postives = 82/144 (56.94%), Query Frame = 0
Query: 1 MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQSNSSQHIYVHHE 60
MG+NSKSS N P CEKLLKA G+ P+I K +Q H
Sbjct: 1 MGRNSKSSKRN-PVCEKLLKALGL--YPRILKFGPP--------PNRQEEPKPAALAHSY 60
Query: 61 PAVMEKTHSSKNNKYAGGDEDSVNAAFSNYINRAKRRLENMASKKHSNDSSSRGKENNLK 120
++ K K + VN FS+YI+RAKRRL +++SK+H D SSRGKEN
Sbjct: 61 SLQIQDDEVEKEQK----PSEDVNDVFSDYISRAKRRLGSISSKRH--DWSSRGKEN--V 120
Query: 121 AEDRRFSDYIVRARNKLRSTSSSV 145
ED RFSDYIVRARNKL++TSSSV
Sbjct: 121 KEDNRFSDYIVRARNKLKATSSSV 125
BLAST of CSPI06G21880 vs. NCBI nr
Match:
KAG6571440.1 (hypothetical protein SDJN03_28168, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 75.1 bits (183), Expect = 6.0e-10
Identity = 64/145 (44.14%), Postives = 87/145 (60.00%), Query Frame = 0
Query: 1 MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQSNSSQHIYVHHE 60
MGKN+KSS + CE+ LKA GM P + HE + + Q + ++
Sbjct: 1 MGKNTKSS-KRSSVCERFLKALGMCPSP---------TRHE-EPLAPEMDKKQRLNINGA 60
Query: 61 PAVMEKTHSSKNNKYAGGDEDSVNAAFSNYINRAKRRLENMASKKHSNDSSSRGKENNLK 120
P + +K N+ AFS+YINRAKRRL +++SK+H D SS+GKE NLK
Sbjct: 61 PQMEKKQKLEPND------------AFSDYINRAKRRLGSISSKRH--DPSSKGKE-NLK 118
Query: 121 AEDRRFSDYIVRARNKLRSTSSSVG 146
EDRRF+DYI+RARN+LR+TSS+VG
Sbjct: 121 -EDRRFTDYIIRARNRLRATSSTVG 118
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KG94 | 5.8e-75 | 99.36 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G409360 PE=4 SV=1 | [more] |
| A0A5D3CQZ7 | 1.1e-57 | 83.87 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KGN47879.1 | 1.2e-74 | 99.36 | hypothetical protein Csa_004306 [Cucumis sativus] | [more] |
| KAA0057288.1 | 2.3e-57 | 83.87 | hypothetical protein E6C27_scaffold280G001290 [Cucumis melo var. makuwa] >TYK134... | [more] |
| KAG6606435.1 | 1.4e-11 | 46.53 | hypothetical protein SDJN03_03752, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAG6571440.1 | 6.0e-10 | 44.14 | hypothetical protein SDJN03_28168, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
