CSPI06G21880.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI06G21880.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr6: 19833309 .. 19834393 (+)
Sequence length	1085
RNA-Seq Expression	CSPI06G21880.1
Synteny	CSPI06G21880.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTTACACAATCGTTAGCTTGTTACACTTGCAAACACCACATTAACATTATATCATCAATCGAGGAAGCATCCTTATAGTATCTTCCAATAATCAAACTCATCTCTCTTCTAGTGCTCATTTGATTCCCTTCTCACTACAACAACATCATTTATAGTCACACACCAATATAAATACCAATCCATATTTCCCCATTTACATAACAAATCAAACACACAACTTTTTCAATCATAAAAGCATGGGAAAAAACTCCAAATCCTCCACCCCCAACACCCCTTTTTGTGAGAAGTTGCTCAAAGCATTTGGAATGAGTCATCGTCCTAAAATCAACAAATTAAGTTCATCCATAAGCCACCATGAACACCATCATCATCAACAACAAAGCAACTCTTCTCAGCATATTTATGTTCATCATGAACCTGCAGTAATGGAGAAGACACACAGCTCTAAGAATAATAAATATGCAGGAGGAGATGAAGATTCTGTAAACGCTGCGTTTAGCAATTACATAAATCGAGCTAAACGAAGGCTGGAAAACATGGCGAGCAAGAAACATAGTAATGACTCGAGTAGCAGAGGTAAAGAGAATAATCTTAAAGCTGAAGATCGTCGGTTTTCGGATTATATCGTTCGTGCTCGAAATAAGCTGAGGTCTACTTCTTCAAGTGTGGGATTGGCTAAAACTAAGAGTAGCAGCTCTGTAAAGTGATGATCATAACACCCTCATAATGCTTGCTTGCTTTCTTTTGTTTTGAAGTGGTTTTGTAAACAATTAAAATCACCACAAAAGTGATTTTAGTTACTATTAATTCTTGTTTTTCTTTTTGGGTTATGGGTTTTACTTTGTTATCATTGATTATTGGCATTTGAAAGCCATATGGTGTAGTGATACATACATTACTACAAGGTCTGTAATAATTCTGCTTTACTAAGGGGGATTTAATTGTTTCTCTCATTATTAACTATATATCATTGTATACTATATTTAACATAATGTAATGTGTTCTTTTGTATTTAATAGCATGTGTGTATTACACAAATTTATTGAATACAAACATATTGAAACGGGTTTGGAGTTCTAGTCG

mRNA sequence

TTCTTACACAATCGTTAGCTTGTTACACTTGCAAACACCACATTAACATTATATCATCAATCGAGGAAGCATCCTTATAGTATCTTCCAATAATCAAACTCATCTCTCTTCTAGTGCTCATTTGATTCCCTTCTCACTACAACAACATCATTTATAGTCACACACCAATATAAATACCAATCCATATTTCCCCATTTACATAACAAATCAAACACACAACTTTTTCAATCATAAAAGCATGGGAAAAAACTCCAAATCCTCCACCCCCAACACCCCTTTTTGTGAGAAGTTGCTCAAAGCATTTGGAATGAGTCATCGTCCTAAAATCAACAAATTAAGTTCATCCATAAGCCACCATGAACACCATCATCATCAACAACAAAGCAACTCTTCTCAGCATATTTATGTTCATCATGAACCTGCAGTAATGGAGAAGACACACAGCTCTAAGAATAATAAATATGCAGGAGGAGATGAAGATTCTGTAAACGCTGCGTTTAGCAATTACATAAATCGAGCTAAACGAAGGCTGGAAAACATGGCGAGCAAGAAACATAGTAATGACTCGAGTAGCAGAGGTAAAGAGAATAATCTTAAAGCTGAAGATCGTCGGTTTTCGGATTATATCGTTCGTGCTCGAAATAAGCTGAGGTCTACTTCTTCAAGTGTGGGATTGGCTAAAACTAAGAGTAGCAGCTCTGTAAAGTGATGATCATAACACCCTCATAATGCTTGCTTGCTTTCTTTTGTTTTGAAGTGGTTTTGTAAACAATTAAAATCACCACAAAAGTGATTTTAGTTACTATTAATTCTTGTTTTTCTTTTTGGGTTATGGGTTTTACTTTGTTATCATTGATTATTGGCATTTGAAAGCCATATGGTGTAGTGATACATACATTACTACAAGGTCTGTAATAATTCTGCTTTACTAAGGGGGATTTAATTGTTTCTCTCATTATTAACTATATATCATTGTATACTATATTTAACATAATGTAATGTGTTCTTTTGTATTTAATAGCATGTGTGTATTACACAAATTTATTGAATACAAACATATTGAAACGGGTTTGGAGTTCTAGTCG

Coding sequence (CDS)

ATGGGAAAAAACTCCAAATCCTCCACCCCCAACACCCCTTTTTGTGAGAAGTTGCTCAAAGCATTTGGAATGAGTCATCGTCCTAAAATCAACAAATTAAGTTCATCCATAAGCCACCATGAACACCATCATCATCAACAACAAAGCAACTCTTCTCAGCATATTTATGTTCATCATGAACCTGCAGTAATGGAGAAGACACACAGCTCTAAGAATAATAAATATGCAGGAGGAGATGAAGATTCTGTAAACGCTGCGTTTAGCAATTACATAAATCGAGCTAAACGAAGGCTGGAAAACATGGCGAGCAAGAAACATAGTAATGACTCGAGTAGCAGAGGTAAAGAGAATAATCTTAAAGCTGAAGATCGTCGGTTTTCGGATTATATCGTTCGTGCTCGAAATAAGCTGAGGTCTACTTCTTCAAGTGTGGGATTGGCTAAAACTAAGAGTAGCAGCTCTGTAAAGTGA

Protein sequence

MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQSNSSQHIYVHHEPAVMEKTHSSKNNKYAGGDEDSVNAAFSNYINRAKRRLENMASKKHSNDSSSRGKENNLKAEDRRFSDYIVRARNKLRSTSSSVGLAKTKSSSSVK*

Homology

[Close]

BLAST of CSPI06G21880.1 vs. ExPASy TrEMBL
Match: A0A0A0KG94 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G409360 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.8e-75
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQSNSSQHIYVHHE 60
           MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQ NSSQHIYVHHE
Sbjct: 1   MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQRNSSQHIYVHHE 60

Query: 61  PAVMEKTHSSKNNKYAGGDEDSVNAAFSNYINRAKRRLENMASKKHSNDSSSRGKENNLK 120
           PAVMEKTHSSKNNKYAGGDEDSVNAAFSNYINRAKRRLENMASKKHSNDSSSRGKENNLK
Sbjct: 61  PAVMEKTHSSKNNKYAGGDEDSVNAAFSNYINRAKRRLENMASKKHSNDSSSRGKENNLK 120

Query: 121 AEDRRFSDYIVRARNKLRSTSSSVGLAKTKSSSSVK 157
           AEDRRFSDYIVRARNKLRSTSSSVGLAKTKSSSSVK
Sbjct: 121 AEDRRFSDYIVRARNKLRSTSSSVGLAKTKSSSSVK 156

[Close]

BLAST of CSPI06G21880.1 vs. ExPASy TrEMBL
Match: A0A5D3CQZ7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold496G00660 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 1.1e-57
Identity = 130/155 (83.87%), Postives = 140/155 (90.32%), Query Frame = 0


Query: 1   MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQSNSSQHIYVHHE 60
           MG+N KSSTPNTPFCEKLLKAFG+SHRPKINKLS S SHHE   HQQQ+NSSQHIYVHHE
Sbjct: 1   MGRNPKSSTPNTPFCEKLLKAFGISHRPKINKLSPSTSHHE-QQHQQQNNSSQHIYVHHE 60

Query: 61  PAVME-KTHSSKNNKYAGGDEDSVNAAFSNYINRAKRRLENMASKKHS-NDSSSRGKENN 120
           PA+ME KTHSSK+NKY GGDEDSVN  FSNYINRAKRRL N+ASKKHS NDSS +GKEN+
Sbjct: 61  PAIMEIKTHSSKSNKYGGGDEDSVNDVFSNYINRAKRRLGNIASKKHSNNDSSGKGKENS 120

Query: 121 LKAEDRRFSDYIVRARNKLRSTSSSVGLAKTKSSS 154
           LKAEDRRFSDYI RAR+KLR+TSSSVGL KTKSSS
Sbjct: 121 LKAEDRRFSDYIARARDKLRATSSSVGLTKTKSSS 154

[Close]

BLAST of CSPI06G21880.1 vs. NCBI nr
Match: KGN47879.1 (hypothetical protein Csa_004306 [Cucumis sativus])

HSP 1 Score: 290.0 bits (741), Expect = 1.2e-74
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQSNSSQHIYVHHE 60
           MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQ NSSQHIYVHHE
Sbjct: 1   MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQRNSSQHIYVHHE 60

Query: 61  PAVMEKTHSSKNNKYAGGDEDSVNAAFSNYINRAKRRLENMASKKHSNDSSSRGKENNLK 120
           PAVMEKTHSSKNNKYAGGDEDSVNAAFSNYINRAKRRLENMASKKHSNDSSSRGKENNLK
Sbjct: 61  PAVMEKTHSSKNNKYAGGDEDSVNAAFSNYINRAKRRLENMASKKHSNDSSSRGKENNLK 120

Query: 121 AEDRRFSDYIVRARNKLRSTSSSVGLAKTKSSSSVK 157
           AEDRRFSDYIVRARNKLRSTSSSVGLAKTKSSSSVK
Sbjct: 121 AEDRRFSDYIVRARNKLRSTSSSVGLAKTKSSSSVK 156

[Close]

BLAST of CSPI06G21880.1 vs. NCBI nr
Match: KAA0057288.1 (hypothetical protein E6C27_scaffold280G001290 [Cucumis melo var. makuwa] >TYK13444.1 hypothetical protein E5676_scaffold496G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 232.6 bits (592), Expect = 2.3e-57
Identity = 130/155 (83.87%), Postives = 140/155 (90.32%), Query Frame = 0


Query: 1   MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQSNSSQHIYVHHE 60
           MG+N KSSTPNTPFCEKLLKAFG+SHRPKINKLS S SHHE   HQQQ+NSSQHIYVHHE
Sbjct: 1   MGRNPKSSTPNTPFCEKLLKAFGISHRPKINKLSPSTSHHE-QQHQQQNNSSQHIYVHHE 60

Query: 61  PAVME-KTHSSKNNKYAGGDEDSVNAAFSNYINRAKRRLENMASKKHS-NDSSSRGKENN 120
           PA+ME KTHSSK+NKY GGDEDSVN  FSNYINRAKRRL N+ASKKHS NDSS +GKEN+
Sbjct: 61  PAIMEIKTHSSKSNKYGGGDEDSVNDVFSNYINRAKRRLGNIASKKHSNNDSSGKGKENS 120

Query: 121 LKAEDRRFSDYIVRARNKLRSTSSSVGLAKTKSSS 154
           LKAEDRRFSDYI RAR+KLR+TSSSVGL KTKSSS
Sbjct: 121 LKAEDRRFSDYIARARDKLRATSSSVGLTKTKSSS 154

[Close]

BLAST of CSPI06G21880.1 vs. NCBI nr
Match: KAG6606435.1 (hypothetical protein SDJN03_03752, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-11
Identity = 67/144 (46.53%), Postives = 82/144 (56.94%), Query Frame = 0


Query: 1   MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQSNSSQHIYVHHE 60
           MG+NSKSS  N P CEKLLKA G+   P+I K              +Q         H  
Sbjct: 1   MGRNSKSSKRN-PVCEKLLKALGL--YPRILKFGPP--------PNRQEEPKPAALAHSY 60

Query: 61  PAVMEKTHSSKNNKYAGGDEDSVNAAFSNYINRAKRRLENMASKKHSNDSSSRGKENNLK 120
              ++     K  K      + VN  FS+YI+RAKRRL +++SK+H  D SSRGKEN   
Sbjct: 61  SLQIQDDEVEKEQK----PSEDVNDVFSDYISRAKRRLGSISSKRH--DWSSRGKEN--V 120

Query: 121 AEDRRFSDYIVRARNKLRSTSSSV 145
            ED RFSDYIVRARNKL++TSSSV
Sbjct: 121 KEDNRFSDYIVRARNKLKATSSSV 125

[Close]

BLAST of CSPI06G21880.1 vs. NCBI nr
Match: KAG6571440.1 (hypothetical protein SDJN03_28168, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.1 bits (183), Expect = 6.0e-10
Identity = 64/145 (44.14%), Postives = 87/145 (60.00%), Query Frame = 0


Query: 1   MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQSNSSQHIYVHHE 60
           MGKN+KSS   +  CE+ LKA GM   P         + HE      + +  Q + ++  
Sbjct: 1   MGKNTKSS-KRSSVCERFLKALGMCPSP---------TRHE-EPLAPEMDKKQRLNINGA 60

Query: 61  PAVMEKTHSSKNNKYAGGDEDSVNAAFSNYINRAKRRLENMASKKHSNDSSSRGKENNLK 120
           P + +K     N+            AFS+YINRAKRRL +++SK+H  D SS+GKE NLK
Sbjct: 61  PQMEKKQKLEPND------------AFSDYINRAKRRLGSISSKRH--DPSSKGKE-NLK 118

Query: 121 AEDRRFSDYIVRARNKLRSTSSSVG 146
            EDRRF+DYI+RARN+LR+TSS+VG
Sbjct: 121 -EDRRFTDYIIRARNRLRATSSTVG 118

The following BLAST results are available for this feature:

BLAST of CSPI06G21880.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G21880.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KG94	5.8e-75	99.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G409360 PE=4 SV=1	[more]
A0A5D3CQZ7	1.1e-57	83.87	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CSPI06G21880.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47879.1	1.2e-74	99.36	hypothetical protein Csa_004306 [Cucumis sativus]	[more]
KAA0057288.1	2.3e-57	83.87	hypothetical protein E6C27_scaffold280G001290 [Cucumis melo var. makuwa] >TYK134...	[more]
KAG6606435.1	1.4e-11	46.53	hypothetical protein SDJN03_03752, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6571440.1	6.0e-10	44.14	hypothetical protein SDJN03_28168, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CSPI06G21880.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..156
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..60
None	No IPR available	PANTHER	PTHR36746:SF3	BNAC04G51760D PROTEIN	coord: 42..153
None	No IPR available	PANTHER	PTHR36746	BNAC04G51760D PROTEIN	coord: 42..153

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI06G21880	CSPI06G21880	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G21880.1.utr5p1	CSPI06G21880.1.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G21880.1.cds1	CSPI06G21880.1.cds1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G21880.1.utr3p1	CSPI06G21880.1.utr3p1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI06G21880.1	CSPI06G21880.1-protein	polypeptide