Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATGCGGTGTGAGCAGCTGATTCAAAGACAGTTGATCAGAGCTGTAACTTTGACGTGGACGAAGCAGTTCACAAATTAGAGAAGTTGGGGATCGTTGTCTGAGTGAGAACTTAACGAGCACAAGATAATTTCTATTCATGTTGTTTAATGTCTTCTTATGCCTTCTTTAACTTGGAAAAGAAAGGAAGAGAGGATGCGGATGGGGCATTCTCCTGTGTAGATTTGGGGAGTGCCAACAAGATCGTAGGCATCACCACAGAGGAGATAGTATCCAAAACTAAAGAAGGCGATGCTACCACCACTTGATACCATAATTATACATAAACTTTATGTACTATTCTGCTTTCCATTCTCAC
mRNA sequence
CATGCGGTGTGAGCAGCTGATTCAAAGACAGTTGATCAGAGCTGTAACTTTGACGTGGACGAAGCAGTTCACAAATTAGAGAAGTTGGGGATCGTTGTCTGAGTGAGAACTTAACGAGCACAAGATAATTTCTATTCATGTTGTTTAATGTCTTCTTATGCCTTCTTTAACTTGGAAAAGAAAGGAAGAGAGGATGCGGATGGGGCATTCTCCTGTGTAGATTTGGGGAGTGCCAACAAGATCGTAGGCATCACCACAGAGGAGATAGTATCCAAAACTAAAGAAGGCGATGCTACCACCACTTGATACCATAATTATACATAAACTTTATGTACTATTCTGCTTTCCATTCTCAC
Coding sequence (CDS)
ATGTCTTCTTATGCCTTCTTTAACTTGGAAAAGAAAGGAAGAGAGGATGCGGATGGGGCATTCTCCTGTGTAGATTTGGGGAGTGCCAACAAGATCGTAGGCATCACCACAGAGGAGATAGTATCCAAAACTAAAGAAGGCGATGCTACCACCACTTGA
Protein sequence
MSSYAFFNLEKKGREDADGAFSCVDLGSANKIVGITTEEIVSKTKEGDATTT*
Homology
BLAST of CSPI03G26350 vs. ExPASy TrEMBL
Match:
A0A6J1D2Z1 (uncharacterized protein LOC111016855 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016855 PE=4 SV=1)
HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query: 5 AFFNLEKKG--REDADGAFSCVDLGSANKIVGITTEEIVSKTKEGDATTT 53
A LEK G DADGA+SCVDL SANKI+G TTEEI+SK KE DA+ T
Sbjct: 470 AVHKLEKLGIVVRDADGAYSCVDLRSANKIIGTTTEEIISKAKEADASAT 519
BLAST of CSPI03G26350 vs. ExPASy TrEMBL
Match:
A0A6J1D4B7 (uncharacterized protein LOC111016855 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111016855 PE=4 SV=1)
HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query: 5 AFFNLEKKG--REDADGAFSCVDLGSANKIVGITTEEIVSKTKEGDATTT 53
A LEK G DADGA+SCVDL SANKI+G TTEEI+SK KE DA+ T
Sbjct: 465 AVHKLEKLGIVVRDADGAYSCVDLRSANKIIGTTTEEIISKAKEADASAT 514
BLAST of CSPI03G26350 vs. ExPASy TrEMBL
Match:
A0A6J1D1Z1 (uncharacterized protein LOC111016855 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111016855 PE=4 SV=1)
HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query: 5 AFFNLEKKG--REDADGAFSCVDLGSANKIVGITTEEIVSKTKEGDATTT 53
A LEK G DADGA+SCVDL SANKI+G TTEEI+SK KE DA+ T
Sbjct: 469 AVHKLEKLGIVVRDADGAYSCVDLRSANKIIGTTTEEIISKAKEADASAT 518
BLAST of CSPI03G26350 vs. ExPASy TrEMBL
Match:
A0A6J1J295 (uncharacterized protein LOC111482053 OS=Cucurbita maxima OX=3661 GN=LOC111482053 PE=4 SV=1)
HSP 1 Score: 55.1 bits (131), Expect = 1.1e-04
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 0
Query: 5 AFFNLEKKG--REDADGAFSCVDLGSANKIVGITTEEIVSKTKE 47
A LEK G DADGA+SCVDL SAN I+GITTEEIV+K KE
Sbjct: 438 AVHKLEKLGILIRDADGAYSCVDLRSANDIIGITTEEIVNKAKE 481
BLAST of CSPI03G26350 vs. ExPASy TrEMBL
Match:
A0A6J1F2F4 (uncharacterized protein LOC111441529 OS=Cucurbita moschata OX=3662 GN=LOC111441529 PE=4 SV=1)
HSP 1 Score: 55.1 bits (131), Expect = 1.1e-04
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 0
Query: 5 AFFNLEKKG--REDADGAFSCVDLGSANKIVGITTEEIVSKTKE 47
A LEK G DADGA+SCVDL SAN I+GITTEEIV+K KE
Sbjct: 458 AVHKLEKLGILIRDADGAYSCVDLRSANDIIGITTEEIVNKAKE 501
BLAST of CSPI03G26350 vs. NCBI nr
Match:
XP_038892952.1 (uncharacterized protein LOC120081846 [Benincasa hispida])
HSP 1 Score: 63.9 bits (154), Expect = 4.7e-07
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 0
Query: 17 ADGAFSCVDLGSANKIVGITTEEIVSKTKEGDATTT 53
ADGA+SCVDL SANKI+GITTEEIVSK KEGDA+TT
Sbjct: 486 ADGAYSCVDLRSANKIIGITTEEIVSKAKEGDASTT 521
BLAST of CSPI03G26350 vs. NCBI nr
Match:
XP_022148091.1 (uncharacterized protein LOC111016855 isoform X3 [Momordica charantia])
HSP 1 Score: 61.6 bits (148), Expect = 2.3e-06
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query: 5 AFFNLEKKG--REDADGAFSCVDLGSANKIVGITTEEIVSKTKEGDATTT 53
A LEK G DADGA+SCVDL SANKI+G TTEEI+SK KE DA+ T
Sbjct: 465 AVHKLEKLGIVVRDADGAYSCVDLRSANKIIGTTTEEIISKAKEADASAT 514
BLAST of CSPI03G26350 vs. NCBI nr
Match:
XP_022148089.1 (uncharacterized protein LOC111016855 isoform X1 [Momordica charantia])
HSP 1 Score: 61.6 bits (148), Expect = 2.3e-06
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query: 5 AFFNLEKKG--REDADGAFSCVDLGSANKIVGITTEEIVSKTKEGDATTT 53
A LEK G DADGA+SCVDL SANKI+G TTEEI+SK KE DA+ T
Sbjct: 470 AVHKLEKLGIVVRDADGAYSCVDLRSANKIIGTTTEEIISKAKEADASAT 519
BLAST of CSPI03G26350 vs. NCBI nr
Match:
XP_022148090.1 (uncharacterized protein LOC111016855 isoform X2 [Momordica charantia])
HSP 1 Score: 61.6 bits (148), Expect = 2.3e-06
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query: 5 AFFNLEKKG--REDADGAFSCVDLGSANKIVGITTEEIVSKTKEGDATTT 53
A LEK G DADGA+SCVDL SANKI+G TTEEI+SK KE DA+ T
Sbjct: 469 AVHKLEKLGIVVRDADGAYSCVDLRSANKIIGTTTEEIISKAKEADASAT 518
BLAST of CSPI03G26350 vs. NCBI nr
Match:
XP_022934332.1 (uncharacterized protein LOC111441529 [Cucurbita moschata])
HSP 1 Score: 55.1 bits (131), Expect = 2.2e-04
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 0
Query: 5 AFFNLEKKG--REDADGAFSCVDLGSANKIVGITTEEIVSKTKE 47
A LEK G DADGA+SCVDL SAN I+GITTEEIV+K KE
Sbjct: 458 AVHKLEKLGILIRDADGAYSCVDLRSANDIIGITTEEIVNKAKE 501
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1D2Z1 | 1.1e-06 | 66.00 | uncharacterized protein LOC111016855 isoform X1 OS=Momordica charantia OX=3673 G... | [more] |
| A0A6J1D4B7 | 1.1e-06 | 66.00 | uncharacterized protein LOC111016855 isoform X3 OS=Momordica charantia OX=3673 G... | [more] |
| A0A6J1D1Z1 | 1.1e-06 | 66.00 | uncharacterized protein LOC111016855 isoform X2 OS=Momordica charantia OX=3673 G... | [more] |
| A0A6J1J295 | 1.1e-04 | 68.18 | uncharacterized protein LOC111482053 OS=Cucurbita maxima OX=3661 GN=LOC111482053... | [more] |
| A0A6J1F2F4 | 1.1e-04 | 68.18 | uncharacterized protein LOC111441529 OS=Cucurbita moschata OX=3662 GN=LOC1114415... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_038892952.1 | 4.7e-07 | 86.11 | uncharacterized protein LOC120081846 [Benincasa hispida] | [more] |
| XP_022148091.1 | 2.3e-06 | 66.00 | uncharacterized protein LOC111016855 isoform X3 [Momordica charantia] | [more] |
| XP_022148089.1 | 2.3e-06 | 66.00 | uncharacterized protein LOC111016855 isoform X1 [Momordica charantia] | [more] |
| XP_022148090.1 | 2.3e-06 | 66.00 | uncharacterized protein LOC111016855 isoform X2 [Momordica charantia] | [more] |
| XP_022934332.1 | 2.2e-04 | 68.18 | uncharacterized protein LOC111441529 [Cucurbita moschata] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
