CSPI03G26350.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI03G26350.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr3: 23699725 .. 23700080 (+)
Sequence length	356
RNA-Seq Expression	CSPI03G26350.1
Synteny	CSPI03G26350.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATGCGGTGTGAGCAGCTGATTCAAAGACAGTTGATCAGAGCTGTAACTTTGACGTGGACGAAGCAGTTCACAAATTAGAGAAGTTGGGGATCGTTGTCTGAGTGAGAACTTAACGAGCACAAGATAATTTCTATTCATGTTGTTTAATGTCTTCTTATGCCTTCTTTAACTTGGAAAAGAAAGGAAGAGAGGATGCGGATGGGGCATTCTCCTGTGTAGATTTGGGGAGTGCCAACAAGATCGTAGGCATCACCACAGAGGAGATAGTATCCAAAACTAAAGAAGGCGATGCTACCACCACTTGATACCATAATTATACATAAACTTTATGTACTATTCTGCTTTCCATTCTCAC

mRNA sequence

CATGCGGTGTGAGCAGCTGATTCAAAGACAGTTGATCAGAGCTGTAACTTTGACGTGGACGAAGCAGTTCACAAATTAGAGAAGTTGGGGATCGTTGTCTGAGTGAGAACTTAACGAGCACAAGATAATTTCTATTCATGTTGTTTAATGTCTTCTTATGCCTTCTTTAACTTGGAAAAGAAAGGAAGAGAGGATGCGGATGGGGCATTCTCCTGTGTAGATTTGGGGAGTGCCAACAAGATCGTAGGCATCACCACAGAGGAGATAGTATCCAAAACTAAAGAAGGCGATGCTACCACCACTTGATACCATAATTATACATAAACTTTATGTACTATTCTGCTTTCCATTCTCAC

Coding sequence (CDS)

ATGTCTTCTTATGCCTTCTTTAACTTGGAAAAGAAAGGAAGAGAGGATGCGGATGGGGCATTCTCCTGTGTAGATTTGGGGAGTGCCAACAAGATCGTAGGCATCACCACAGAGGAGATAGTATCCAAAACTAAAGAAGGCGATGCTACCACCACTTGA

Protein sequence

MSSYAFFNLEKKGREDADGAFSCVDLGSANKIVGITTEEIVSKTKEGDATTT*

Homology

[Close]

BLAST of CSPI03G26350.1 vs. ExPASy TrEMBL
Match: A0A6J1D2Z1 (uncharacterized protein LOC111016855 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016855 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 5   AFFNLEKKG--REDADGAFSCVDLGSANKIVGITTEEIVSKTKEGDATTT 53
           A   LEK G    DADGA+SCVDL SANKI+G TTEEI+SK KE DA+ T
Sbjct: 470 AVHKLEKLGIVVRDADGAYSCVDLRSANKIIGTTTEEIISKAKEADASAT 519

[Close]

BLAST of CSPI03G26350.1 vs. ExPASy TrEMBL
Match: A0A6J1D4B7 (uncharacterized protein LOC111016855 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111016855 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 5   AFFNLEKKG--REDADGAFSCVDLGSANKIVGITTEEIVSKTKEGDATTT 53
           A   LEK G    DADGA+SCVDL SANKI+G TTEEI+SK KE DA+ T
Sbjct: 465 AVHKLEKLGIVVRDADGAYSCVDLRSANKIIGTTTEEIISKAKEADASAT 514

[Close]

BLAST of CSPI03G26350.1 vs. ExPASy TrEMBL
Match: A0A6J1D1Z1 (uncharacterized protein LOC111016855 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111016855 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 5   AFFNLEKKG--REDADGAFSCVDLGSANKIVGITTEEIVSKTKEGDATTT 53
           A   LEK G    DADGA+SCVDL SANKI+G TTEEI+SK KE DA+ T
Sbjct: 469 AVHKLEKLGIVVRDADGAYSCVDLRSANKIIGTTTEEIISKAKEADASAT 518

[Close]

BLAST of CSPI03G26350.1 vs. ExPASy TrEMBL
Match: A0A6J1J295 (uncharacterized protein LOC111482053 OS=Cucurbita maxima OX=3661 GN=LOC111482053 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-04
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 5   AFFNLEKKG--REDADGAFSCVDLGSANKIVGITTEEIVSKTKE 47
           A   LEK G    DADGA+SCVDL SAN I+GITTEEIV+K KE
Sbjct: 438 AVHKLEKLGILIRDADGAYSCVDLRSANDIIGITTEEIVNKAKE 481

[Close]

BLAST of CSPI03G26350.1 vs. ExPASy TrEMBL
Match: A0A6J1F2F4 (uncharacterized protein LOC111441529 OS=Cucurbita moschata OX=3662 GN=LOC111441529 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-04
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 5   AFFNLEKKG--REDADGAFSCVDLGSANKIVGITTEEIVSKTKE 47
           A   LEK G    DADGA+SCVDL SAN I+GITTEEIV+K KE
Sbjct: 458 AVHKLEKLGILIRDADGAYSCVDLRSANDIIGITTEEIVNKAKE 501

[Close]

BLAST of CSPI03G26350.1 vs. NCBI nr
Match: XP_038892952.1 (uncharacterized protein LOC120081846 [Benincasa hispida])

HSP 1 Score: 63.9 bits (154), Expect = 4.7e-07
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 17  ADGAFSCVDLGSANKIVGITTEEIVSKTKEGDATTT 53
           ADGA+SCVDL SANKI+GITTEEIVSK KEGDA+TT
Sbjct: 486 ADGAYSCVDLRSANKIIGITTEEIVSKAKEGDASTT 521

[Close]

BLAST of CSPI03G26350.1 vs. NCBI nr
Match: XP_022148091.1 (uncharacterized protein LOC111016855 isoform X3 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 2.3e-06
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 5   AFFNLEKKG--REDADGAFSCVDLGSANKIVGITTEEIVSKTKEGDATTT 53
           A   LEK G    DADGA+SCVDL SANKI+G TTEEI+SK KE DA+ T
Sbjct: 465 AVHKLEKLGIVVRDADGAYSCVDLRSANKIIGTTTEEIISKAKEADASAT 514

[Close]

BLAST of CSPI03G26350.1 vs. NCBI nr
Match: XP_022148089.1 (uncharacterized protein LOC111016855 isoform X1 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 2.3e-06
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 5   AFFNLEKKG--REDADGAFSCVDLGSANKIVGITTEEIVSKTKEGDATTT 53
           A   LEK G    DADGA+SCVDL SANKI+G TTEEI+SK KE DA+ T
Sbjct: 470 AVHKLEKLGIVVRDADGAYSCVDLRSANKIIGTTTEEIISKAKEADASAT 519

[Close]

BLAST of CSPI03G26350.1 vs. NCBI nr
Match: XP_022148090.1 (uncharacterized protein LOC111016855 isoform X2 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 2.3e-06
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 5   AFFNLEKKG--REDADGAFSCVDLGSANKIVGITTEEIVSKTKEGDATTT 53
           A   LEK G    DADGA+SCVDL SANKI+G TTEEI+SK KE DA+ T
Sbjct: 469 AVHKLEKLGIVVRDADGAYSCVDLRSANKIIGTTTEEIISKAKEADASAT 518

[Close]

BLAST of CSPI03G26350.1 vs. NCBI nr
Match: XP_022934332.1 (uncharacterized protein LOC111441529 [Cucurbita moschata])

HSP 1 Score: 55.1 bits (131), Expect = 2.2e-04
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 5   AFFNLEKKG--REDADGAFSCVDLGSANKIVGITTEEIVSKTKE 47
           A   LEK G    DADGA+SCVDL SAN I+GITTEEIV+K KE
Sbjct: 458 AVHKLEKLGILIRDADGAYSCVDLRSANDIIGITTEEIVNKAKE 501

The following BLAST results are available for this feature:

BLAST of CSPI03G26350.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G26350.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D2Z1	1.1e-06	66.00	uncharacterized protein LOC111016855 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1D4B7	1.1e-06	66.00	uncharacterized protein LOC111016855 isoform X3 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1D1Z1	1.1e-06	66.00	uncharacterized protein LOC111016855 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1J295	1.1e-04	68.18	uncharacterized protein LOC111482053 OS=Cucurbita maxima OX=3661 GN=LOC111482053...	[more]
A0A6J1F2F4	1.1e-04	68.18	uncharacterized protein LOC111441529 OS=Cucurbita moschata OX=3662 GN=LOC1114415...	[more]

BLAST of CSPI03G26350.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892952.1	4.7e-07	86.11	uncharacterized protein LOC120081846 [Benincasa hispida]	[more]
XP_022148091.1	2.3e-06	66.00	uncharacterized protein LOC111016855 isoform X3 [Momordica charantia]	[more]
XP_022148089.1	2.3e-06	66.00	uncharacterized protein LOC111016855 isoform X1 [Momordica charantia]	[more]
XP_022148090.1	2.3e-06	66.00	uncharacterized protein LOC111016855 isoform X2 [Momordica charantia]	[more]
XP_022934332.1	2.2e-04	68.18	uncharacterized protein LOC111441529 [Cucurbita moschata]	[more]

BLAST of CSPI03G26350.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI03G26350	CSPI03G26350	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G26350.1.utr5p1	CSPI03G26350.1.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G26350.1.cds1	CSPI03G26350.1.cds1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G26350.1.utr3p1	CSPI03G26350.1.utr3p1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI03G26350.1	CSPI03G26350.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane