Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTGCAGTTTTGCGAGGTTAAACAGAGTCATAAACCTTCACCAAAATAAGGAAGAACATCAACTGAAGACAATGGATCAAGTTAGAGACCACGAAGGAATGGAGAATGAAGAGATACCTACACTTGTGCCTGTGAAAAGAAAGGTCGCATCAACCTCAACACAACCCGCGAAGAATCTTAAAGATGATGCGACCAAAGACTCGTACTCAGGAAAATTCCCTCATTGTAGAAAGGTCACTCATTGGCCACCTCACGAGGATAGCCTTTTACCTCCTCATAATCCAAAAGAACAATCCCTCTCCCCTCCTCACAAAGATAAAACTCCTTCCCTCCTAAAAAACATAAAACTCCTTCCCTCCTAG
mRNA sequence
ATGGTGTGCAGTTTTGCGAGGTTAAACAGAGTCATAAACCTTCACCAAAATAAGGAAGAACATCAACTGAAGACAATGGATCAAGTTAGAGACCACGAAGGAATGGAGAATGAAGAGATACCTACACTTGTGCCTGTGAAAAGAAAGGTCGCATCAACCTCAACACAACCCGCGAAGAATCTTAAAGATGATGCGACCAAAGACTCGTACTCAGGAAAATTCCCTCATTGTAGAAAGGTCACTCATTGGCCACCTCACGAGGATAGCCTTTTACCTCCTCATAATCCAAAAGAACAATCCCTCTCCCCTCCTCACAAAGATAAAACTCCTTCCCTCCTAAAAAACATAAAACTCCTTCCCTCCTAG
Coding sequence (CDS)
ATGGTGTGCAGTTTTGCGAGGTTAAACAGAGTCATAAACCTTCACCAAAATAAGGAAGAACATCAACTGAAGACAATGGATCAAGTTAGAGACCACGAAGGAATGGAGAATGAAGAGATACCTACACTTGTGCCTGTGAAAAGAAAGGTCGCATCAACCTCAACACAACCCGCGAAGAATCTTAAAGATGATGCGACCAAAGACTCGTACTCAGGAAAATTCCCTCATTGTAGAAAGGTCACTCATTGGCCACCTCACGAGGATAGCCTTTTACCTCCTCATAATCCAAAAGAACAATCCCTCTCCCCTCCTCACAAAGATAAAACTCCTTCCCTCCTAAAAAACATAAAACTCCTTCCCTCCTAG
Protein sequence
MVCSFARLNRVINLHQNKEEHQLKTMDQVRDHEGMENEEIPTLVPVKRKVASTSTQPAKNLKDDATKDSYSGKFPHCRKVTHWPPHEDSLLPPHNPKEQSLSPPHKDKTPSLLKNIKLLPS*
Homology
BLAST of CSPI03G23300 vs. ExPASy TrEMBL
Match:
A0A0A0L879 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G418740 PE=4 SV=1)
HSP 1 Score: 234.2 bits (596), Expect = 2.9e-58
Identity = 115/121 (95.04%), Postives = 117/121 (96.69%), Query Frame = 0
Query: 1 MVCSFARLNRVINLHQNKEEHQLKTMDQVRDHEGMENEEIPTLVPVKRKVASTSTQPAKN 60
MVCSFARLNRVINLHQNKEEHQLKTMDQVRDHEGMENEEI TLVP+KRKVASTSTQPAK
Sbjct: 1 MVCSFARLNRVINLHQNKEEHQLKTMDQVRDHEGMENEEISTLVPMKRKVASTSTQPAKK 60
Query: 61 LKDDATKDSYSGKFPHCRKVTHWPPHEDSLLPPHNPKEQSLSPPHKDKTPSLLKNIKLLP 120
LKDD TKDSYSGKFPHCRKVT WPPHEDSLLPPHNPKEQSLSPP+KDKTPSLLKNIKLLP
Sbjct: 61 LKDDGTKDSYSGKFPHCRKVTQWPPHEDSLLPPHNPKEQSLSPPYKDKTPSLLKNIKLLP 120
Query: 121 S 122
S
Sbjct: 121 S 121
BLAST of CSPI03G23300 vs. ExPASy TrEMBL
Match:
A0A5D3CAP7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G001850 PE=4 SV=1)
HSP 1 Score: 80.1 bits (196), Expect = 7.1e-12
Identity = 47/77 (61.04%), Postives = 55/77 (71.43%), Query Frame = 0
Query: 6 ARLNRVINLHQN-KEEHQLKTMDQVRDHEGMENEEIPTLVPVKRKVASTSTQPAKNLKDD 65
+ LNRVI LHQN KEE LKT+ ++RD EGM+ ++I LVPVKRKVA T QPA K D
Sbjct: 129 SELNRVIILHQNKKEERNLKTVGRIRDPEGMKEKKIHPLVPVKRKVALTLMQPANKPKVD 188
Query: 66 ATKDSYSGKFPHCRKVT 82
A KDS GKFP +KVT
Sbjct: 189 AIKDSTLGKFPRRKKVT 205
BLAST of CSPI03G23300 vs. ExPASy TrEMBL
Match:
A0A5A7T049 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00040 PE=4 SV=1)
HSP 1 Score: 69.7 bits (169), Expect = 9.5e-09
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 0
Query: 2 VCSFARLNRVINLHQNK-EEHQLKTMDQVRDHEGMENEEIPTLVPVKRKVASTST 56
VC+ RL+RVI LHQNK EEH LK + QV+D +GMENE+IP L P KRK ASTST
Sbjct: 38 VCTQTRLSRVITLHQNKEEEHYLKIVGQVKDPKGMENEDIPPLTPTKRKAASTST 92
BLAST of CSPI03G23300 vs. ExPASy TrEMBL
Match:
A0A5D3BEA4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold469G00170 PE=4 SV=1)
HSP 1 Score: 68.2 bits (165), Expect = 2.8e-08
Identity = 50/113 (44.25%), Postives = 66/113 (58.41%), Query Frame = 0
Query: 8 LNRVINLHQNK-EEHQLKTMDQVRDHEGMEN-EEIPTLVPVKRKVASTSTQPAKNLKDDA 67
LNRVI HQNK EE+ LKT+ ++ +GME+ E++P +P+KR +ASTS Q K LK DA
Sbjct: 194 LNRVITFHQNKEEEYHLKTLGHEKEPKGMEDKEDLPLPLPMKRTIASTSMQLGKKLKVDA 253
Query: 68 TKD-SYSGKFPHCRKVTHWPPHE----DSLLPPHNPKEQSLSPPHKDKTPSLL 114
TK + HC+KVT P E SL P ++ +PPH D LL
Sbjct: 254 TKQVAKENNSTHCKKVTSLPGDELLCRPSLFFPLINLPKTKTPPHLDLNEPLL 306
BLAST of CSPI03G23300 vs. ExPASy TrEMBL
Match:
A0A5A7UFG4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00220 PE=4 SV=1)
HSP 1 Score: 68.2 bits (165), Expect = 2.8e-08
Identity = 50/113 (44.25%), Postives = 65/113 (57.52%), Query Frame = 0
Query: 8 LNRVINLHQNK-EEHQLKTMDQVRDHEGMEN-EEIPTLVPVKRKVASTSTQPAKNLKDDA 67
LNRVI HQNK EE+ LKT+ ++ EGME+ E++P +P+KR +ASTS Q K LK DA
Sbjct: 194 LNRVITFHQNKEEEYHLKTLGHEKEPEGMEDKEDLPLSLPMKRTIASTSMQLGKKLKVDA 253
Query: 68 TKD-SYSGKFPHCRKVTHWPPHEDSLLP----PHNPKEQSLSPPHKDKTPSLL 114
TK + HC+KVT P E P P ++ +PPH D LL
Sbjct: 254 TKQVAKENNSTHCKKVTSLPGDELLCRPYLFFPLINLPKTKTPPHLDLNEPLL 306
BLAST of CSPI03G23300 vs. NCBI nr
Match:
KAE8650695.1 (hypothetical protein Csa_023695, partial [Cucumis sativus])
HSP 1 Score: 225.3 bits (573), Expect = 2.8e-55
Identity = 111/117 (94.87%), Postives = 113/117 (96.58%), Query Frame = 0
Query: 5 FARLNRVINLHQNKEEHQLKTMDQVRDHEGMENEEIPTLVPVKRKVASTSTQPAKNLKDD 64
FARLNRVINLHQNKEEHQLKTMDQVRDHEGMENEEI TLVP+KRKVASTSTQPAK LKDD
Sbjct: 1 FARLNRVINLHQNKEEHQLKTMDQVRDHEGMENEEISTLVPMKRKVASTSTQPAKKLKDD 60
Query: 65 ATKDSYSGKFPHCRKVTHWPPHEDSLLPPHNPKEQSLSPPHKDKTPSLLKNIKLLPS 122
TKDSYSGKFPHCRKVT WPPHEDSLLPPHNPKEQSLSPP+KDKTPSLLKNIKLLPS
Sbjct: 61 GTKDSYSGKFPHCRKVTQWPPHEDSLLPPHNPKEQSLSPPYKDKTPSLLKNIKLLPS 117
BLAST of CSPI03G23300 vs. NCBI nr
Match:
KAA0047718.1 (hypothetical protein E6C27_scaffold115G002320 [Cucumis melo var. makuwa] >TYK08372.1 hypothetical protein E5676_scaffold648G001850 [Cucumis melo var. makuwa])
HSP 1 Score: 80.1 bits (196), Expect = 1.5e-11
Identity = 47/77 (61.04%), Postives = 55/77 (71.43%), Query Frame = 0
Query: 6 ARLNRVINLHQN-KEEHQLKTMDQVRDHEGMENEEIPTLVPVKRKVASTSTQPAKNLKDD 65
+ LNRVI LHQN KEE LKT+ ++RD EGM+ ++I LVPVKRKVA T QPA K D
Sbjct: 129 SELNRVIILHQNKKEERNLKTVGRIRDPEGMKEKKIHPLVPVKRKVALTLMQPANKPKVD 188
Query: 66 ATKDSYSGKFPHCRKVT 82
A KDS GKFP +KVT
Sbjct: 189 AIKDSTLGKFPRRKKVT 205
BLAST of CSPI03G23300 vs. NCBI nr
Match:
KAA0034845.1 (hypothetical protein E6C27_scaffold515G00040 [Cucumis melo var. makuwa])
HSP 1 Score: 69.7 bits (169), Expect = 2.0e-08
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 0
Query: 2 VCSFARLNRVINLHQNK-EEHQLKTMDQVRDHEGMENEEIPTLVPVKRKVASTST 56
VC+ RL+RVI LHQNK EEH LK + QV+D +GMENE+IP L P KRK ASTST
Sbjct: 38 VCTQTRLSRVITLHQNKEEEHYLKIVGQVKDPKGMENEDIPPLTPTKRKAASTST 92
BLAST of CSPI03G23300 vs. NCBI nr
Match:
KAA0053237.1 (hypothetical protein E6C27_scaffold102G00220 [Cucumis melo var. makuwa])
HSP 1 Score: 68.2 bits (165), Expect = 5.7e-08
Identity = 50/113 (44.25%), Postives = 65/113 (57.52%), Query Frame = 0
Query: 8 LNRVINLHQNK-EEHQLKTMDQVRDHEGMEN-EEIPTLVPVKRKVASTSTQPAKNLKDDA 67
LNRVI HQNK EE+ LKT+ ++ EGME+ E++P +P+KR +ASTS Q K LK DA
Sbjct: 194 LNRVITFHQNKEEEYHLKTLGHEKEPEGMEDKEDLPLSLPMKRTIASTSMQLGKKLKVDA 253
Query: 68 TKD-SYSGKFPHCRKVTHWPPHEDSLLP----PHNPKEQSLSPPHKDKTPSLL 114
TK + HC+KVT P E P P ++ +PPH D LL
Sbjct: 254 TKQVAKENNSTHCKKVTSLPGDELLCRPYLFFPLINLPKTKTPPHLDLNEPLL 306
BLAST of CSPI03G23300 vs. NCBI nr
Match:
TYJ97633.1 (hypothetical protein E5676_scaffold469G00170 [Cucumis melo var. makuwa])
HSP 1 Score: 68.2 bits (165), Expect = 5.7e-08
Identity = 50/113 (44.25%), Postives = 66/113 (58.41%), Query Frame = 0
Query: 8 LNRVINLHQNK-EEHQLKTMDQVRDHEGMEN-EEIPTLVPVKRKVASTSTQPAKNLKDDA 67
LNRVI HQNK EE+ LKT+ ++ +GME+ E++P +P+KR +ASTS Q K LK DA
Sbjct: 194 LNRVITFHQNKEEEYHLKTLGHEKEPKGMEDKEDLPLPLPMKRTIASTSMQLGKKLKVDA 253
Query: 68 TKD-SYSGKFPHCRKVTHWPPHE----DSLLPPHNPKEQSLSPPHKDKTPSLL 114
TK + HC+KVT P E SL P ++ +PPH D LL
Sbjct: 254 TKQVAKENNSTHCKKVTSLPGDELLCRPSLFFPLINLPKTKTPPHLDLNEPLL 306
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0L879 | 2.9e-58 | 95.04 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G418740 PE=4 SV=1 | [more] |
| A0A5D3CAP7 | 7.1e-12 | 61.04 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7T049 | 9.5e-09 | 67.27 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5D3BEA4 | 2.8e-08 | 44.25 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7UFG4 | 2.8e-08 | 44.25 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAE8650695.1 | 2.8e-55 | 94.87 | hypothetical protein Csa_023695, partial [Cucumis sativus] | [more] |
| KAA0047718.1 | 1.5e-11 | 61.04 | hypothetical protein E6C27_scaffold115G002320 [Cucumis melo var. makuwa] >TYK083... | [more] |
| KAA0034845.1 | 2.0e-08 | 67.27 | hypothetical protein E6C27_scaffold515G00040 [Cucumis melo var. makuwa] | [more] |
| KAA0053237.1 | 5.7e-08 | 44.25 | hypothetical protein E6C27_scaffold102G00220 [Cucumis melo var. makuwa] | [more] |
| TYJ97633.1 | 5.7e-08 | 44.25 | hypothetical protein E5676_scaffold469G00170 [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
