CSPI03G23300.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI03G23300.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr3: 20149325 .. 20149690 (-)
Sequence length	366
RNA-Seq Expression	CSPI03G23300.1
Synteny	CSPI03G23300.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTGCAGTTTTGCGAGGTTAAACAGAGTCATAAACCTTCACCAAAATAAGGAAGAACATCAACTGAAGACAATGGATCAAGTTAGAGACCACGAAGGAATGGAGAATGAAGAGATACCTACACTTGTGCCTGTGAAAAGAAAGGTCGCATCAACCTCAACACAACCCGCGAAGAATCTTAAAGATGATGCGACCAAAGACTCGTACTCAGGAAAATTCCCTCATTGTAGAAAGGTCACTCATTGGCCACCTCACGAGGATAGCCTTTTACCTCCTCATAATCCAAAAGAACAATCCCTCTCCCCTCCTCACAAAGATAAAACTCCTTCCCTCCTAAAAAACATAAAACTCCTTCCCTCCTAG

mRNA sequence

ATGGTGTGCAGTTTTGCGAGGTTAAACAGAGTCATAAACCTTCACCAAAATAAGGAAGAACATCAACTGAAGACAATGGATCAAGTTAGAGACCACGAAGGAATGGAGAATGAAGAGATACCTACACTTGTGCCTGTGAAAAGAAAGGTCGCATCAACCTCAACACAACCCGCGAAGAATCTTAAAGATGATGCGACCAAAGACTCGTACTCAGGAAAATTCCCTCATTGTAGAAAGGTCACTCATTGGCCACCTCACGAGGATAGCCTTTTACCTCCTCATAATCCAAAAGAACAATCCCTCTCCCCTCCTCACAAAGATAAAACTCCTTCCCTCCTAAAAAACATAAAACTCCTTCCCTCCTAG

Coding sequence (CDS)

ATGGTGTGCAGTTTTGCGAGGTTAAACAGAGTCATAAACCTTCACCAAAATAAGGAAGAACATCAACTGAAGACAATGGATCAAGTTAGAGACCACGAAGGAATGGAGAATGAAGAGATACCTACACTTGTGCCTGTGAAAAGAAAGGTCGCATCAACCTCAACACAACCCGCGAAGAATCTTAAAGATGATGCGACCAAAGACTCGTACTCAGGAAAATTCCCTCATTGTAGAAAGGTCACTCATTGGCCACCTCACGAGGATAGCCTTTTACCTCCTCATAATCCAAAAGAACAATCCCTCTCCCCTCCTCACAAAGATAAAACTCCTTCCCTCCTAAAAAACATAAAACTCCTTCCCTCCTAG

Protein sequence

MVCSFARLNRVINLHQNKEEHQLKTMDQVRDHEGMENEEIPTLVPVKRKVASTSTQPAKNLKDDATKDSYSGKFPHCRKVTHWPPHEDSLLPPHNPKEQSLSPPHKDKTPSLLKNIKLLPS*

Homology

[Close]

BLAST of CSPI03G23300.1 vs. ExPASy TrEMBL
Match: A0A0A0L879 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G418740 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 2.9e-58
Identity = 115/121 (95.04%), Postives = 117/121 (96.69%), Query Frame = 0


Query: 1   MVCSFARLNRVINLHQNKEEHQLKTMDQVRDHEGMENEEIPTLVPVKRKVASTSTQPAKN 60
           MVCSFARLNRVINLHQNKEEHQLKTMDQVRDHEGMENEEI TLVP+KRKVASTSTQPAK 
Sbjct: 1   MVCSFARLNRVINLHQNKEEHQLKTMDQVRDHEGMENEEISTLVPMKRKVASTSTQPAKK 60

Query: 61  LKDDATKDSYSGKFPHCRKVTHWPPHEDSLLPPHNPKEQSLSPPHKDKTPSLLKNIKLLP 120
           LKDD TKDSYSGKFPHCRKVT WPPHEDSLLPPHNPKEQSLSPP+KDKTPSLLKNIKLLP
Sbjct: 61  LKDDGTKDSYSGKFPHCRKVTQWPPHEDSLLPPHNPKEQSLSPPYKDKTPSLLKNIKLLP 120

Query: 121 S 122
           S
Sbjct: 121 S 121

[Close]

BLAST of CSPI03G23300.1 vs. ExPASy TrEMBL
Match: A0A5D3CAP7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G001850 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 7.1e-12
Identity = 47/77 (61.04%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 6   ARLNRVINLHQN-KEEHQLKTMDQVRDHEGMENEEIPTLVPVKRKVASTSTQPAKNLKDD 65
           + LNRVI LHQN KEE  LKT+ ++RD EGM+ ++I  LVPVKRKVA T  QPA   K D
Sbjct: 129 SELNRVIILHQNKKEERNLKTVGRIRDPEGMKEKKIHPLVPVKRKVALTLMQPANKPKVD 188

Query: 66  ATKDSYSGKFPHCRKVT 82
           A KDS  GKFP  +KVT
Sbjct: 189 AIKDSTLGKFPRRKKVT 205

[Close]

BLAST of CSPI03G23300.1 vs. ExPASy TrEMBL
Match: A0A5A7T049 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00040 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 9.5e-09
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 2  VCSFARLNRVINLHQNK-EEHQLKTMDQVRDHEGMENEEIPTLVPVKRKVASTST 56
          VC+  RL+RVI LHQNK EEH LK + QV+D +GMENE+IP L P KRK ASTST
Sbjct: 38 VCTQTRLSRVITLHQNKEEEHYLKIVGQVKDPKGMENEDIPPLTPTKRKAASTST 92

[Close]

BLAST of CSPI03G23300.1 vs. ExPASy TrEMBL
Match: A0A5D3BEA4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold469G00170 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.8e-08
Identity = 50/113 (44.25%), Postives = 66/113 (58.41%), Query Frame = 0


Query: 8   LNRVINLHQNK-EEHQLKTMDQVRDHEGMEN-EEIPTLVPVKRKVASTSTQPAKNLKDDA 67
           LNRVI  HQNK EE+ LKT+   ++ +GME+ E++P  +P+KR +ASTS Q  K LK DA
Sbjct: 194 LNRVITFHQNKEEEYHLKTLGHEKEPKGMEDKEDLPLPLPMKRTIASTSMQLGKKLKVDA 253

Query: 68  TKD-SYSGKFPHCRKVTHWPPHE----DSLLPPHNPKEQSLSPPHKDKTPSLL 114
           TK  +      HC+KVT  P  E     SL  P     ++ +PPH D    LL
Sbjct: 254 TKQVAKENNSTHCKKVTSLPGDELLCRPSLFFPLINLPKTKTPPHLDLNEPLL 306

[Close]

BLAST of CSPI03G23300.1 vs. ExPASy TrEMBL
Match: A0A5A7UFG4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00220 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.8e-08
Identity = 50/113 (44.25%), Postives = 65/113 (57.52%), Query Frame = 0


Query: 8   LNRVINLHQNK-EEHQLKTMDQVRDHEGMEN-EEIPTLVPVKRKVASTSTQPAKNLKDDA 67
           LNRVI  HQNK EE+ LKT+   ++ EGME+ E++P  +P+KR +ASTS Q  K LK DA
Sbjct: 194 LNRVITFHQNKEEEYHLKTLGHEKEPEGMEDKEDLPLSLPMKRTIASTSMQLGKKLKVDA 253

Query: 68  TKD-SYSGKFPHCRKVTHWPPHEDSLLP----PHNPKEQSLSPPHKDKTPSLL 114
           TK  +      HC+KVT  P  E    P    P     ++ +PPH D    LL
Sbjct: 254 TKQVAKENNSTHCKKVTSLPGDELLCRPYLFFPLINLPKTKTPPHLDLNEPLL 306

[Close]

BLAST of CSPI03G23300.1 vs. NCBI nr
Match: KAE8650695.1 (hypothetical protein Csa_023695, partial [Cucumis sativus])

HSP 1 Score: 225.3 bits (573), Expect = 2.8e-55
Identity = 111/117 (94.87%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 5   FARLNRVINLHQNKEEHQLKTMDQVRDHEGMENEEIPTLVPVKRKVASTSTQPAKNLKDD 64
           FARLNRVINLHQNKEEHQLKTMDQVRDHEGMENEEI TLVP+KRKVASTSTQPAK LKDD
Sbjct: 1   FARLNRVINLHQNKEEHQLKTMDQVRDHEGMENEEISTLVPMKRKVASTSTQPAKKLKDD 60

Query: 65  ATKDSYSGKFPHCRKVTHWPPHEDSLLPPHNPKEQSLSPPHKDKTPSLLKNIKLLPS 122
            TKDSYSGKFPHCRKVT WPPHEDSLLPPHNPKEQSLSPP+KDKTPSLLKNIKLLPS
Sbjct: 61  GTKDSYSGKFPHCRKVTQWPPHEDSLLPPHNPKEQSLSPPYKDKTPSLLKNIKLLPS 117

[Close]

BLAST of CSPI03G23300.1 vs. NCBI nr
Match: KAA0047718.1 (hypothetical protein E6C27_scaffold115G002320 [Cucumis melo var. makuwa] >TYK08372.1 hypothetical protein E5676_scaffold648G001850 [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 1.5e-11
Identity = 47/77 (61.04%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 6   ARLNRVINLHQN-KEEHQLKTMDQVRDHEGMENEEIPTLVPVKRKVASTSTQPAKNLKDD 65
           + LNRVI LHQN KEE  LKT+ ++RD EGM+ ++I  LVPVKRKVA T  QPA   K D
Sbjct: 129 SELNRVIILHQNKKEERNLKTVGRIRDPEGMKEKKIHPLVPVKRKVALTLMQPANKPKVD 188

Query: 66  ATKDSYSGKFPHCRKVT 82
           A KDS  GKFP  +KVT
Sbjct: 189 AIKDSTLGKFPRRKKVT 205

[Close]

BLAST of CSPI03G23300.1 vs. NCBI nr
Match: KAA0034845.1 (hypothetical protein E6C27_scaffold515G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-08
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 2  VCSFARLNRVINLHQNK-EEHQLKTMDQVRDHEGMENEEIPTLVPVKRKVASTST 56
          VC+  RL+RVI LHQNK EEH LK + QV+D +GMENE+IP L P KRK ASTST
Sbjct: 38 VCTQTRLSRVITLHQNKEEEHYLKIVGQVKDPKGMENEDIPPLTPTKRKAASTST 92

[Close]

BLAST of CSPI03G23300.1 vs. NCBI nr
Match: KAA0053237.1 (hypothetical protein E6C27_scaffold102G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 5.7e-08
Identity = 50/113 (44.25%), Postives = 65/113 (57.52%), Query Frame = 0


Query: 8   LNRVINLHQNK-EEHQLKTMDQVRDHEGMEN-EEIPTLVPVKRKVASTSTQPAKNLKDDA 67
           LNRVI  HQNK EE+ LKT+   ++ EGME+ E++P  +P+KR +ASTS Q  K LK DA
Sbjct: 194 LNRVITFHQNKEEEYHLKTLGHEKEPEGMEDKEDLPLSLPMKRTIASTSMQLGKKLKVDA 253

Query: 68  TKD-SYSGKFPHCRKVTHWPPHEDSLLP----PHNPKEQSLSPPHKDKTPSLL 114
           TK  +      HC+KVT  P  E    P    P     ++ +PPH D    LL
Sbjct: 254 TKQVAKENNSTHCKKVTSLPGDELLCRPYLFFPLINLPKTKTPPHLDLNEPLL 306

[Close]

BLAST of CSPI03G23300.1 vs. NCBI nr
Match: TYJ97633.1 (hypothetical protein E5676_scaffold469G00170 [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 5.7e-08
Identity = 50/113 (44.25%), Postives = 66/113 (58.41%), Query Frame = 0


Query: 8   LNRVINLHQNK-EEHQLKTMDQVRDHEGMEN-EEIPTLVPVKRKVASTSTQPAKNLKDDA 67
           LNRVI  HQNK EE+ LKT+   ++ +GME+ E++P  +P+KR +ASTS Q  K LK DA
Sbjct: 194 LNRVITFHQNKEEEYHLKTLGHEKEPKGMEDKEDLPLPLPMKRTIASTSMQLGKKLKVDA 253

Query: 68  TKD-SYSGKFPHCRKVTHWPPHE----DSLLPPHNPKEQSLSPPHKDKTPSLL 114
           TK  +      HC+KVT  P  E     SL  P     ++ +PPH D    LL
Sbjct: 254 TKQVAKENNSTHCKKVTSLPGDELLCRPSLFFPLINLPKTKTPPHLDLNEPLL 306

The following BLAST results are available for this feature:

BLAST of CSPI03G23300.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G23300.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L879	2.9e-58	95.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G418740 PE=4 SV=1	[more]
A0A5D3CAP7	7.1e-12	61.04	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T049	9.5e-09	67.27	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BEA4	2.8e-08	44.25	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UFG4	2.8e-08	44.25	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of CSPI03G23300.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650695.1	2.8e-55	94.87	hypothetical protein Csa_023695, partial [Cucumis sativus]	[more]
KAA0047718.1	1.5e-11	61.04	hypothetical protein E6C27_scaffold115G002320 [Cucumis melo var. makuwa] >TYK083...	[more]
KAA0034845.1	2.0e-08	67.27	hypothetical protein E6C27_scaffold515G00040 [Cucumis melo var. makuwa]	[more]
KAA0053237.1	5.7e-08	44.25	hypothetical protein E6C27_scaffold102G00220 [Cucumis melo var. makuwa]	[more]
TYJ97633.1	5.7e-08	44.25	hypothetical protein E5676_scaffold469G00170 [Cucumis melo var. makuwa]	[more]

BLAST of CSPI03G23300.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..85

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI03G23300	CSPI03G23300	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G23300.1.cds1	CSPI03G23300.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI03G23300.1	CSPI03G23300.1-protein	polypeptide