Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCAAAACCAGATGGGAAATATGTCAGCTACAGCTTTGTTGCAGAAAGCTGCTGAAATTGGGCCAACTTGTACCACTACTACCACCACTAGATCAGCCCCATCACTACTACAACTACAACAGGGGTTTTTGTTTACTAATGGGAGTGAGTTTTGTAATTCTTCTAGTACTACAAGTAGACCAATTATTGTTGTTGAGAATGAGAATAATGGGAATGGGAATGAGATGTACACTGCAAAACGGCGTAACGGCGTATTTGAACTGATGCAAGATAACAATATTCAACCTAAATCAGCGGACTTGCAGCATTGTGGCTTGTGGATATTGCAAGGAAGGTAG
mRNA sequence
ATGAATCAAAACCAGATGGGAAATATGTCAGCTACAGCTTTGTTGCAGAAAGCTGCTGAAATTGGGCCAACTTGTACCACTACTACCACCACTAGATCAGCCCCATCACTACTACAACTACAACAGGGGTTTTTGTTTACTAATGGGAGTGAGTTTTGTAATTCTTCTAGTACTACAAGTAGACCAATTATTGTTGTTGAGAATGAGAATAATGGGAATGGGAATGAGATGTACACTGCAAAACGGCGTAACGGCGTATTTGAACTGATGCAAGATAACAATATTCAACCTAAATCAGCGGACTTGCAGCATTGTGGCTTGTGGATATTGCAAGGAAGGTAG
Coding sequence (CDS)
ATGAATCAAAACCAGATGGGAAATATGTCAGCTACAGCTTTGTTGCAGAAAGCTGCTGAAATTGGGCCAACTTGTACCACTACTACCACCACTAGATCAGCCCCATCACTACTACAACTACAACAGGGGTTTTTGTTTACTAATGGGAGTGAGTTTTGTAATTCTTCTAGTACTACAAGTAGACCAATTATTGTTGTTGAGAATGAGAATAATGGGAATGGGAATGAGATGTACACTGCAAAACGGCGTAACGGCGTATTTGAACTGATGCAAGATAACAATATTCAACCTAAATCAGCGGACTTGCAGCATTGTGGCTTGTGGATATTGCAAGGAAGGTAG
Protein sequence
MNQNQMGNMSATALLQKAAEIGPTCTTTTTTRSAPSLLQLQQGFLFTNGSEFCNSSSTTSRPIIVVENENNGNGNEMYTAKRRNGVFELMQDNNIQPKSADLQHCGLWILQGR
Homology
BLAST of Bhi08G000600 vs. TAIR 10
Match:
AT5G44160.1 (C2H2-like zinc finger protein )
HSP 1 Score: 42.0 bits (97), Expect = 3.8e-04
Identity = 24/38 (63.16%), Postives = 25/38 (65.79%), Query Frame = 0
Query: 2 NQNQMGNMSATALLQKAAEIGPTCTTTTTTRSAPSLLQ 40
N N NMSATALLQKAAEIG T TTT T + LQ
Sbjct: 329 NANSNVNMSATALLQKAAEIGATSTTTAATNDPSTFLQ 366
BLAST of Bhi08G000600 vs. ExPASy TrEMBL
Match:
A0A0A0LQA1 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G409480 PE=4 SV=1)
HSP 1 Score: 92.8 bits (229), Expect = 9.7e-16
Identity = 60/94 (63.83%), Postives = 68/94 (72.34%), Query Frame = 0
Query: 1 MNQNQMGNMSATALLQKAAEIGPT--CTTTTTTRSAP---SLLQL-QQGFLFTNGSEFCN 60
+N+ QMGNMSATALLQKAAEIG T ++ T TRSA SLLQ+ QQGFLF NGSEFCN
Sbjct: 297 VNETQMGNMSATALLQKAAEIGATSSASSNTVTRSAAPSLSLLQIQQQGFLFNNGSEFCN 356
Query: 61 SSSTTSRPIIVVENENNGNGNEMYTAKRRNGVFE 89
T + PI+VVEN NG+EMYTAKRR E
Sbjct: 357 ---TNNNPIVVVEN----NGSEMYTAKRRRSQSE 383
BLAST of Bhi08G000600 vs. ExPASy TrEMBL
Match:
A0A5A7VJW9 (Zinc finger protein MAGPIE-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G001720 PE=4 SV=1)
HSP 1 Score: 90.5 bits (223), Expect = 4.8e-15
Identity = 59/94 (62.77%), Postives = 68/94 (72.34%), Query Frame = 0
Query: 1 MNQNQMGNMSATALLQKAAEIGPTCTTT--TTTRSAP---SLLQL-QQGFLFTNGSEFCN 60
+N+ Q GNMSATALLQKAAEIG T +++ T TRSA SLLQ+ QQGFLF NGSEFCN
Sbjct: 294 VNETQRGNMSATALLQKAAEIGATSSSSSNTVTRSAAPSLSLLQIQQQGFLFNNGSEFCN 353
Query: 61 SSSTTSRPIIVVENENNGNGNEMYTAKRRNGVFE 89
T + PI+VVEN NG+EMYTAKRR E
Sbjct: 354 ---TNNNPIVVVEN----NGSEMYTAKRRRSQSE 380
BLAST of Bhi08G000600 vs. ExPASy TrEMBL
Match:
A0A5D3DA24 (Zinc finger protein MAGPIE-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold604G00130 PE=4 SV=1)
HSP 1 Score: 90.1 bits (222), Expect = 6.3e-15
Identity = 59/94 (62.77%), Postives = 67/94 (71.28%), Query Frame = 0
Query: 1 MNQNQMGNMSATALLQKAAEIGPTCT--TTTTTRSAP---SLLQL-QQGFLFTNGSEFCN 60
+N+ Q GNMSATALLQKAAEIG T + + T TRSA SLLQ+ QQGFLF NGSEFCN
Sbjct: 294 VNETQRGNMSATALLQKAAEIGATSSSPSNTVTRSAAPSLSLLQIQQQGFLFNNGSEFCN 353
Query: 61 SSSTTSRPIIVVENENNGNGNEMYTAKRRNGVFE 89
T + PI+VVEN NG+EMYTAKRR E
Sbjct: 354 ---TNNNPIVVVEN----NGSEMYTAKRRRSQSE 380
BLAST of Bhi08G000600 vs. ExPASy TrEMBL
Match:
A0A1S3C2S8 (zinc finger protein MAGPIE-like OS=Cucumis melo OX=3656 GN=LOC103496010 PE=4 SV=1)
HSP 1 Score: 90.1 bits (222), Expect = 6.3e-15
Identity = 59/94 (62.77%), Postives = 67/94 (71.28%), Query Frame = 0
Query: 1 MNQNQMGNMSATALLQKAAEIGPTCT--TTTTTRSAP---SLLQL-QQGFLFTNGSEFCN 60
+N+ Q GNMSATALLQKAAEIG T + + T TRSA SLLQ+ QQGFLF NGSEFCN
Sbjct: 294 VNETQRGNMSATALLQKAAEIGATSSSPSNTVTRSAAPSLSLLQIQQQGFLFNNGSEFCN 353
Query: 61 SSSTTSRPIIVVENENNGNGNEMYTAKRRNGVFE 89
T + PI+VVEN NG+EMYTAKRR E
Sbjct: 354 ---TNNNPIVVVEN----NGSEMYTAKRRRSQSE 380
BLAST of Bhi08G000600 vs. ExPASy TrEMBL
Match:
A0A6J1FV86 (zinc finger protein MAGPIE-like OS=Cucurbita moschata OX=3662 GN=LOC111448749 PE=4 SV=1)
HSP 1 Score: 76.3 bits (186), Expect = 9.4e-11
Identity = 47/83 (56.63%), Postives = 54/83 (65.06%), Query Frame = 0
Query: 1 MNQNQMGNMSATALLQKAAEIGPTCTTTTTTRSAPSLLQLQQGFLFTNGSEFCNSSSTTS 60
+NQ MG MSATALLQKAAEIG S + L++GFLF NGSEFCNS T+
Sbjct: 211 VNQTHMGTMSATALLQKAAEIG-------AISSPGHSVILEEGFLFNNGSEFCNSG--TT 270
Query: 61 RPIIVVENENNGNGNEMYTAKRR 84
PI+V+ GN NEMYTAKRR
Sbjct: 271 NPIVVI-----GNENEMYTAKRR 279
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| AT5G44160.1 | 3.8e-04 | 63.16 | C2H2-like zinc finger protein | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LQA1 | 9.7e-16 | 63.83 | C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G409480 P... | [more] |
| A0A5A7VJW9 | 4.8e-15 | 62.77 | Zinc finger protein MAGPIE-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
| A0A5D3DA24 | 6.3e-15 | 62.77 | Zinc finger protein MAGPIE-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
| A0A1S3C2S8 | 6.3e-15 | 62.77 | zinc finger protein MAGPIE-like OS=Cucumis melo OX=3656 GN=LOC103496010 PE=4 SV=... | [more] |
| A0A6J1FV86 | 9.4e-11 | 56.63 | zinc finger protein MAGPIE-like OS=Cucurbita moschata OX=3662 GN=LOC111448749 PE... | [more] |
