Bhi08M000600 (mRNA) Wax gourd (B227) v1

Overview


Name	Bhi08M000600
Type	mRNA
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Zinc finger protein MAGPIE-like
Location	chr8: 23595447 .. 23595788 (+)
Sequence length	342
RNA-Seq Expression	Bhi08M000600
Synteny	Bhi08M000600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCAAAACCAGATGGGAAATATGTCAGCTACAGCTTTGTTGCAGAAAGCTGCTGAAATTGGGCCAACTTGTACCACTACTACCACCACTAGATCAGCCCCATCACTACTACAACTACAACAGGGGTTTTTGTTTACTAATGGGAGTGAGTTTTGTAATTCTTCTAGTACTACAAGTAGACCAATTATTGTTGTTGAGAATGAGAATAATGGGAATGGGAATGAGATGTACACTGCAAAACGGCGTAACGGCGTATTTGAACTGATGCAAGATAACAATATTCAACCTAAATCAGCGGACTTGCAGCATTGTGGCTTGTGGATATTGCAAGGAAGGTAG

mRNA sequence

ATGAATCAAAACCAGATGGGAAATATGTCAGCTACAGCTTTGTTGCAGAAAGCTGCTGAAATTGGGCCAACTTGTACCACTACTACCACCACTAGATCAGCCCCATCACTACTACAACTACAACAGGGGTTTTTGTTTACTAATGGGAGTGAGTTTTGTAATTCTTCTAGTACTACAAGTAGACCAATTATTGTTGTTGAGAATGAGAATAATGGGAATGGGAATGAGATGTACACTGCAAAACGGCGTAACGGCGTATTTGAACTGATGCAAGATAACAATATTCAACCTAAATCAGCGGACTTGCAGCATTGTGGCTTGTGGATATTGCAAGGAAGGTAG

Coding sequence (CDS)

ATGAATCAAAACCAGATGGGAAATATGTCAGCTACAGCTTTGTTGCAGAAAGCTGCTGAAATTGGGCCAACTTGTACCACTACTACCACCACTAGATCAGCCCCATCACTACTACAACTACAACAGGGGTTTTTGTTTACTAATGGGAGTGAGTTTTGTAATTCTTCTAGTACTACAAGTAGACCAATTATTGTTGTTGAGAATGAGAATAATGGGAATGGGAATGAGATGTACACTGCAAAACGGCGTAACGGCGTATTTGAACTGATGCAAGATAACAATATTCAACCTAAATCAGCGGACTTGCAGCATTGTGGCTTGTGGATATTGCAAGGAAGGTAG

Protein sequence

MNQNQMGNMSATALLQKAAEIGPTCTTTTTTRSAPSLLQLQQGFLFTNGSEFCNSSSTTSRPIIVVENENNGNGNEMYTAKRRNGVFELMQDNNIQPKSADLQHCGLWILQGR

Homology

[Close]

BLAST of Bhi08M000600 vs. TAIR 10
Match: AT5G44160.1 (C2H2-like zinc finger protein )

HSP 1 Score: 42.0 bits (97), Expect = 3.8e-04
Identity = 24/38 (63.16%), Postives = 25/38 (65.79%), Query Frame = 0


Query: 2   NQNQMGNMSATALLQKAAEIGPTCTTTTTTRSAPSLLQ 40
           N N   NMSATALLQKAAEIG T TTT  T    + LQ
Sbjct: 329 NANSNVNMSATALLQKAAEIGATSTTTAATNDPSTFLQ 366

[Close]

BLAST of Bhi08M000600 vs. ExPASy TrEMBL
Match: A0A0A0LQA1 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G409480 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 9.7e-16
Identity = 60/94 (63.83%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 1   MNQNQMGNMSATALLQKAAEIGPT--CTTTTTTRSAP---SLLQL-QQGFLFTNGSEFCN 60
           +N+ QMGNMSATALLQKAAEIG T   ++ T TRSA    SLLQ+ QQGFLF NGSEFCN
Sbjct: 297 VNETQMGNMSATALLQKAAEIGATSSASSNTVTRSAAPSLSLLQIQQQGFLFNNGSEFCN 356

Query: 61  SSSTTSRPIIVVENENNGNGNEMYTAKRRNGVFE 89
              T + PI+VVEN    NG+EMYTAKRR    E
Sbjct: 357 ---TNNNPIVVVEN----NGSEMYTAKRRRSQSE 383

[Close]

BLAST of Bhi08M000600 vs. ExPASy TrEMBL
Match: A0A5A7VJW9 (Zinc finger protein MAGPIE-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G001720 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.8e-15
Identity = 59/94 (62.77%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 1   MNQNQMGNMSATALLQKAAEIGPTCTTT--TTTRSAP---SLLQL-QQGFLFTNGSEFCN 60
           +N+ Q GNMSATALLQKAAEIG T +++  T TRSA    SLLQ+ QQGFLF NGSEFCN
Sbjct: 294 VNETQRGNMSATALLQKAAEIGATSSSSSNTVTRSAAPSLSLLQIQQQGFLFNNGSEFCN 353

Query: 61  SSSTTSRPIIVVENENNGNGNEMYTAKRRNGVFE 89
              T + PI+VVEN    NG+EMYTAKRR    E
Sbjct: 354 ---TNNNPIVVVEN----NGSEMYTAKRRRSQSE 380

[Close]

BLAST of Bhi08M000600 vs. ExPASy TrEMBL
Match: A0A5D3DA24 (Zinc finger protein MAGPIE-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold604G00130 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 6.3e-15
Identity = 59/94 (62.77%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 1   MNQNQMGNMSATALLQKAAEIGPTCT--TTTTTRSAP---SLLQL-QQGFLFTNGSEFCN 60
           +N+ Q GNMSATALLQKAAEIG T +  + T TRSA    SLLQ+ QQGFLF NGSEFCN
Sbjct: 294 VNETQRGNMSATALLQKAAEIGATSSSPSNTVTRSAAPSLSLLQIQQQGFLFNNGSEFCN 353

Query: 61  SSSTTSRPIIVVENENNGNGNEMYTAKRRNGVFE 89
              T + PI+VVEN    NG+EMYTAKRR    E
Sbjct: 354 ---TNNNPIVVVEN----NGSEMYTAKRRRSQSE 380

[Close]

BLAST of Bhi08M000600 vs. ExPASy TrEMBL
Match: A0A1S3C2S8 (zinc finger protein MAGPIE-like OS=Cucumis melo OX=3656 GN=LOC103496010 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 6.3e-15
Identity = 59/94 (62.77%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 1   MNQNQMGNMSATALLQKAAEIGPTCT--TTTTTRSAP---SLLQL-QQGFLFTNGSEFCN 60
           +N+ Q GNMSATALLQKAAEIG T +  + T TRSA    SLLQ+ QQGFLF NGSEFCN
Sbjct: 294 VNETQRGNMSATALLQKAAEIGATSSSPSNTVTRSAAPSLSLLQIQQQGFLFNNGSEFCN 353

Query: 61  SSSTTSRPIIVVENENNGNGNEMYTAKRRNGVFE 89
              T + PI+VVEN    NG+EMYTAKRR    E
Sbjct: 354 ---TNNNPIVVVEN----NGSEMYTAKRRRSQSE 380

[Close]

BLAST of Bhi08M000600 vs. ExPASy TrEMBL
Match: A0A6J1FV86 (zinc finger protein MAGPIE-like OS=Cucurbita moschata OX=3662 GN=LOC111448749 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 9.4e-11
Identity = 47/83 (56.63%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 1   MNQNQMGNMSATALLQKAAEIGPTCTTTTTTRSAPSLLQLQQGFLFTNGSEFCNSSSTTS 60
           +NQ  MG MSATALLQKAAEIG          S    + L++GFLF NGSEFCNS   T+
Sbjct: 211 VNQTHMGTMSATALLQKAAEIG-------AISSPGHSVILEEGFLFNNGSEFCNSG--TT 270

Query: 61  RPIIVVENENNGNGNEMYTAKRR 84
            PI+V+     GN NEMYTAKRR
Sbjct: 271 NPIVVI-----GNENEMYTAKRR 279

The following BLAST results are available for this feature:

BLAST of Bhi08M000600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G44160.1	3.8e-04	63.16	C2H2-like zinc finger protein	[more]

BLAST of Bhi08M000600 vs. TAIR 10


Match Name	E-value	Identity	Description

BLAST of Bhi08M000600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQA1	9.7e-16	63.83	C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G409480 P...	[more]
A0A5A7VJW9	4.8e-15	62.77	Zinc finger protein MAGPIE-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3DA24	6.3e-15	62.77	Zinc finger protein MAGPIE-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3C2S8	6.3e-15	62.77	zinc finger protein MAGPIE-like OS=Cucumis melo OX=3656 GN=LOC103496010 PE=4 SV=...	[more]
A0A6J1FV86	9.4e-11	56.63	zinc finger protein MAGPIE-like OS=Cucurbita moschata OX=3662 GN=LOC111448749 PE...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi08G000600	Bhi08G000600	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi08M000600.exon1	Bhi08M000600.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi08M000600	cds.Bhi08M000600	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi08M000600	Bhi08M000600-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity