Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAACTCATAAAGAGGAAAAGAGAAAAAGCAACCCCCCAACCTAATTTTTAATCCCCACATATAACATATTGTCCTGTATATATATTCGTGTAAGCATCGAAGTATTTACGTACGAATGGAATAAATTAAATATTACATAAGCTTGCAGAGATGGGGTTCCTCTGTTTTTAAATTCACATGATTGTTTCATTTCGCCTTTAAAAACACACACACACACACACAGCATCAGCAATTTTTTTATGCTATAAAAAGCCAGACCCTTCATTTCAGGTCCTATTCTTCACTAACTTTTCTCAATTGGGGAGCAAGTTCAAGTTGAGAGACAAACAAAGAGACAGAGATGGTTTCTACATTACAAAAGAGATTCGATTCACGCAACAAGCTACGCCTTGTTCGATCTCTGGCCACCTATGAATCCTCTGTAATTCCTAAACCATTCTGTTTTTGTTATGTTTTTTGATCTATTCTCTGTTTTGCCACTTCAGTTTGTTTGAGCCATTTAATAACAATCAAGTCCTCTGTTTATACAGGCAAAACAGAGGTGTATGTTCTGGAATGCTGTTCTCTTCATTCATAAGCTTAAACTCAAGCTGGAAGCAATTGAGAGAGAGTATTCAAATCTATTGGCCATGAAAAGAGAATACTTGAACTCAATAAAGCAATTTCATTCCCCCAAGGTCCTTTTTCCCCTCCCTCTCTCTCTTTTAACAATTCAAATTCTTCCTAATATTCATTATAAATCACTGCTAAACTCAAATTTAATGTCTGATTATTAATACATAAAAGCAGGAAGTGAAGGTTGAGAAGAATGGAGAAGAGTTTAAAGTGAAAGTGAGATGCGAAAAGGGAGGGGACAGATTGGTTTCAGTATTAGAAGCATTTGAGAAAATGGGTCTTAATGTTGTGGAAGCTAGAGTTTCATGTACTGAATGTTTTTGTATGGAAGCCATTGCTGTAGCTGAAAATCATCGATTGCTTAATGTCAGTGATATAACTGAAGCTATTAATGTAGCCATTGATGGCAAATTATTAGCTGGAAATCAGCATCACAAAGACATTCCTGAGAATGATGCTGAAATTTAGCCACTTGCTAACCTATCAATTCAATGAAAATGTTTCTTGCTATTCCAATCTTTTGTATTTTCATTTCTTTCTTTCCAATTCAAATTTGAAAATGG
mRNA sequence
CAAACTCATAAAGAGGAAAAGAGAAAAAGCAACCCCCCAACCTAATTTTTAATCCCCACATATAACATATTGTCCTGTATATATATTCGTGTAAGCATCGAAGTATTTACGTACGAATGGAATAAATTAAATATTACATAAGCTTGCAGAGATGGGGTTCCTCTGTTTTTAAATTCACATGATTGTTTCATTTCGCCTTTAAAAACACACACACACACACACAGCATCAGCAATTTTTTTATGCTATAAAAAGCCAGACCCTTCATTTCAGGTCCTATTCTTCACTAACTTTTCTCAATTGGGGAGCAAGTTCAAGTTGAGAGACAAACAAAGAGACAGAGATGGTTTCTACATTACAAAAGAGATTCGATTCACGCAACAAGCTACGCCTTGTTCGATCTCTGGCCACCTATGAATCCTCTGCAAAACAGAGGTGTATGTTCTGGAATGCTGTTCTCTTCATTCATAAGCTTAAACTCAAGCTGGAAGCAATTGAGAGAGAGTATTCAAATCTATTGGCCATGAAAAGAGAATACTTGAACTCAATAAAGCAATTTCATTCCCCCAAGGAAGTGAAGGTTGAGAAGAATGGAGAAGAGTTTAAAGTGAAAGTGAGATGCGAAAAGGGAGGGGACAGATTGGTTTCAGTATTAGAAGCATTTGAGAAAATGGGTCTTAATGTTGTGGAAGCTAGAGTTTCATGTACTGAATGTTTTTGTATGGAAGCCATTGCTGTAGCTGAAAATCATCGATTGCTTAATGTCAGTGATATAACTGAAGCTATTAATGTAGCCATTGATGGCAAATTATTAGCTGGAAATCAGCATCACAAAGACATTCCTGAGAATGATGCTGAAATTTAGCCACTTGCTAACCTATCAATTCAATGAAAATGTTTCTTGCTATTCCAATCTTTTGTATTTTCATTTCTTTCTTTCCAATTCAAATTTGAAAATGG
Coding sequence (CDS)
ATGGTTTCTACATTACAAAAGAGATTCGATTCACGCAACAAGCTACGCCTTGTTCGATCTCTGGCCACCTATGAATCCTCTGCAAAACAGAGGTGTATGTTCTGGAATGCTGTTCTCTTCATTCATAAGCTTAAACTCAAGCTGGAAGCAATTGAGAGAGAGTATTCAAATCTATTGGCCATGAAAAGAGAATACTTGAACTCAATAAAGCAATTTCATTCCCCCAAGGAAGTGAAGGTTGAGAAGAATGGAGAAGAGTTTAAAGTGAAAGTGAGATGCGAAAAGGGAGGGGACAGATTGGTTTCAGTATTAGAAGCATTTGAGAAAATGGGTCTTAATGTTGTGGAAGCTAGAGTTTCATGTACTGAATGTTTTTGTATGGAAGCCATTGCTGTAGCTGAAAATCATCGATTGCTTAATGTCAGTGATATAACTGAAGCTATTAATGTAGCCATTGATGGCAAATTATTAGCTGGAAATCAGCATCACAAAGACATTCCTGAGAATGATGCTGAAATTTAG
Protein sequence
MVSTLQKRFDSRNKLRLVRSLATYESSAKQRCMFWNAVLFIHKLKLKLEAIEREYSNLLAMKREYLNSIKQFHSPKEVKVEKNGEEFKVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVSCTECFCMEAIAVAENHRLLNVSDITEAINVAIDGKLLAGNQHHKDIPENDAEI
Homology
BLAST of Bhi07G000180 vs. TAIR 10
Match:
AT1G29270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40435.1); Has 98 Blast hits to 98 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 103.6 bits (257), Expect = 1.6e-22
Identity = 63/154 (40.91%), Postives = 101/154 (65.58%), Query Frame = 0
Query: 1 MVSTLQKRFDSRNKLRLVRSLATYESSAKQRCM-FWNAVLFIHKLKLKLEAIEREYSNLL 60
MV++ QK+ S+ K +++L ++ S ++ M A+L+I LKL++EA++REY +L
Sbjct: 1 MVASEQKKRASQGKPHFLKNLTHFKFSIHEQSMVIREALLYIAMLKLEIEALQREYEDLK 60
Query: 61 AMKREYLNSIKQFHSPKEVKVEKNGEEFKVKVRCEKGGDRLVSVLEAFEKMGLNVVEARV 120
K+E L H +EVKVEK GE F+VK++ +G + LV++LEAFE+MGLNV +AR
Sbjct: 61 ITKKESL------HQFQEVKVEKIGEMFQVKIKSPRGENNLVNILEAFEEMGLNVAQARA 120
Query: 121 SCTECFCMEAIAVAEN-HRLLNVSDITEAINVAI 153
SC + F MEAI ++ +L +V D+T+ + A+
Sbjct: 121 SCLDSFAMEAIVAPQSKDKLCSVDDLTQTLVKAL 148
BLAST of Bhi07G000180 vs. TAIR 10
Match:
AT3G56220.1 (transcription regulators )
HSP 1 Score: 56.6 bits (135), Expect = 2.3e-08
Identity = 51/138 (36.96%), Postives = 70/138 (50.72%), Query Frame = 0
Query: 1 MVSTLQKRFDS-RNKLRLVRSLATYESSAKQRCMFWNAVLFIHKLKLKLEAIEREYSNLL 60
MVS KR S R K L+RS+ T + + + +A +I KLK K+E I ++
Sbjct: 1 MVSREHKRGSSLREKFHLLRSI-TDSHAESETSIIVDASKYIKKLKQKVEKINNATTS-- 60
Query: 61 AMKREYLNSIKQFHSPKE-VKVEKNGEEFKVKVRCEKG-GDRLVSVLEAFEKMGLNVVEA 120
S ++ P V VE + F +KV K LV VLE FE +GL+VVEA
Sbjct: 61 ------EQSFRESSDPNPMVTVETLEKGFMIKVMSRKNEAGMLVCVLETFEDLGLDVVEA 120
Query: 121 RVSCTECFCMEAIAVAEN 136
RVSCT+ F + AI + N
Sbjct: 121 RVSCTDTFSLHAIGSSNN 129
BLAST of Bhi07G000180 vs. TAIR 10
Match:
AT2G40435.1 (BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1); Has 289 Blast hits to 289 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 56.2 bits (134), Expect = 3.0e-08
Identity = 51/154 (33.12%), Postives = 78/154 (50.65%), Query Frame = 0
Query: 1 MVSTLQKRFDSRNKLRLVRSLATYESSAKQRCMFWNAVLFIHKLKLKLEAIEREYSNLLA 60
MVS QKR + K +L+RS+ T + + +A +I KLK K+E ++ +
Sbjct: 1 MVSREQKRGSLQEKFQLLRSI-TNSHAENDTSIIMDASKYIQKLKQKVERFNQDPT---- 60
Query: 61 MKREYLNSIKQFHSPKEVKVEKNGEEFKVKVRCEKG-GDRLVSVLEAFEKMGLNVVEARV 120
E +S V VE + F + V K LVSVLEAFE +GLNV+EAR
Sbjct: 61 --AEQSSSEPTDPKTPMVTVETLDKGFMINVFSGKNQPGMLVSVLEAFEDIGLNVLEARA 120
Query: 121 SCTECFCMEAIAVA-ENHRLLNVSDITEAINVAI 153
SCT+ F + A+ + E+ ++ + +A+ AI
Sbjct: 121 SCTDSFSLHAMGLENEDGENMDAEAVKQAVTDAI 147
BLAST of Bhi07G000180 vs. ExPASy TrEMBL
Match:
A0A5A7UBN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008340 PE=4 SV=1)
HSP 1 Score: 299.7 bits (766), Expect = 8.0e-78
Identity = 155/174 (89.08%), Postives = 164/174 (94.25%), Query Frame = 0
Query: 1 MVSTLQKRFDSRNKLRLVRSLATYESSAKQRCMFWNAVLFIHKLKLKLEAIEREYSNLLA 60
MVSTLQKRFDSRNKLRLVRSL TYESS +Q C+FWNAVLFIHKLKLKLEAIEREYSNLL
Sbjct: 1 MVSTLQKRFDSRNKLRLVRSLPTYESSGRQTCVFWNAVLFIHKLKLKLEAIEREYSNLLN 60
Query: 61 MKREYLNSIKQFHSPKEVKVEKNGEEFKVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS 120
MKREYLNSIKQFHS KEVKVEKNGEEF+VKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS
Sbjct: 61 MKREYLNSIKQFHSSKEVKVEKNGEEFRVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS 120
Query: 121 CTECFCMEAIAVAE-NHRLLNVSDITEAINVAIDGKLLAGNQHHKDIPENDAEI 174
CTECFCMEAIAVAE +H+LLN+SDIT+AINVAID KLLA NQHH DIP NDA++
Sbjct: 121 CTECFCMEAIAVAEDHHQLLNLSDITDAINVAIDPKLLAPNQHHNDIPHNDAQL 174
BLAST of Bhi07G000180 vs. ExPASy TrEMBL
Match:
E5GC31 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)
HSP 1 Score: 299.7 bits (766), Expect = 8.0e-78
Identity = 155/174 (89.08%), Postives = 164/174 (94.25%), Query Frame = 0
Query: 1 MVSTLQKRFDSRNKLRLVRSLATYESSAKQRCMFWNAVLFIHKLKLKLEAIEREYSNLLA 60
MVSTLQKRFDSRNKLRLVRSL TYESS +Q C+FWNAVLFIHKLKLKLEAIEREYSNLL
Sbjct: 1 MVSTLQKRFDSRNKLRLVRSLPTYESSGRQTCVFWNAVLFIHKLKLKLEAIEREYSNLLD 60
Query: 61 MKREYLNSIKQFHSPKEVKVEKNGEEFKVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS 120
MKREYLNSIKQFHS KEVKVEKNGEEF+VKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS
Sbjct: 61 MKREYLNSIKQFHSSKEVKVEKNGEEFRVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS 120
Query: 121 CTECFCMEAIAVAE-NHRLLNVSDITEAINVAIDGKLLAGNQHHKDIPENDAEI 174
CTECFCMEAIAVAE +H+LLN+SDIT+AINVAID KLLA NQHH DIP NDA++
Sbjct: 121 CTECFCMEAIAVAEDHHQLLNLSDITDAINVAIDPKLLAPNQHHNDIPHNDAQL 174
BLAST of Bhi07G000180 vs. ExPASy TrEMBL
Match:
A0A1S3B049 (uncharacterized protein LOC103484437 OS=Cucumis melo OX=3656 GN=LOC103484437 PE=4 SV=1)
HSP 1 Score: 299.7 bits (766), Expect = 8.0e-78
Identity = 155/174 (89.08%), Postives = 164/174 (94.25%), Query Frame = 0
Query: 1 MVSTLQKRFDSRNKLRLVRSLATYESSAKQRCMFWNAVLFIHKLKLKLEAIEREYSNLLA 60
MVSTLQKRFDSRNKLRLVRSL TYESS +Q C+FWNAVLFIHKLKLKLEAIEREYSNLL
Sbjct: 1 MVSTLQKRFDSRNKLRLVRSLPTYESSGRQTCVFWNAVLFIHKLKLKLEAIEREYSNLLD 60
Query: 61 MKREYLNSIKQFHSPKEVKVEKNGEEFKVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS 120
MKREYLNSIKQFHS KEVKVEKNGEEF+VKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS
Sbjct: 61 MKREYLNSIKQFHSSKEVKVEKNGEEFRVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS 120
Query: 121 CTECFCMEAIAVAE-NHRLLNVSDITEAINVAIDGKLLAGNQHHKDIPENDAEI 174
CTECFCMEAIAVAE +H+LLN+SDIT+AINVAID KLLA NQHH DIP NDA++
Sbjct: 121 CTECFCMEAIAVAEDHHQLLNLSDITDAINVAIDPKLLAPNQHHNDIPHNDAQL 174
BLAST of Bhi07G000180 vs. ExPASy TrEMBL
Match:
A0A0A0KHW9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519710 PE=4 SV=1)
HSP 1 Score: 296.6 bits (758), Expect = 6.8e-77
Identity = 156/175 (89.14%), Postives = 164/175 (93.71%), Query Frame = 0
Query: 1 MVSTLQKRFDSRNKLRLVRSLATYESSAKQRCMFWNAVLFIHKLKLKLEAIEREYSNLLA 60
MVSTLQKRFDSRNKLRLVRSL TYESS +QRC+FWNAVLFIHKLKLKLEAIEREYSNLL
Sbjct: 1 MVSTLQKRFDSRNKLRLVRSLPTYESSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLD 60
Query: 61 MKREYLNSIKQFHSPKEVKVEKNGEEFKVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS 120
MKREYLNSIKQFHS KEVKVEKNGEEF+VKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS
Sbjct: 61 MKREYLNSIKQFHSSKEVKVEKNGEEFRVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS 120
Query: 121 CTECFCMEAIAVAE-NHRLLNVSDITEAINVAIDGKLLAGNQHHKD-IPENDAEI 174
CTECFCMEA AVAE +H+LLN+SDITEAINVAID KLLA NQHH D IP NDA++
Sbjct: 121 CTECFCMEATAVAEDHHQLLNLSDITEAINVAIDPKLLAPNQHHNDSIPHNDAQL 175
BLAST of Bhi07G000180 vs. ExPASy TrEMBL
Match:
A0A6J1IR65 (uncharacterized protein LOC111478631 OS=Cucurbita maxima OX=3661 GN=LOC111478631 PE=4 SV=1)
HSP 1 Score: 266.5 bits (680), Expect = 7.5e-68
Identity = 136/173 (78.61%), Postives = 152/173 (87.86%), Query Frame = 0
Query: 1 MVSTLQKRFDSRNKLRLVRSLATYESSAKQRCMFWNAVLFIHKLKLKLEAIEREYSNLLA 60
MVST QKRFDSR KLRLVRSL TY+SS KQ FWNAVLF+HKLKLKLEAIEREYSNLL+
Sbjct: 1 MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLS 60
Query: 61 MKREYLNSIKQFHSPKEVKVEKNGEEFKVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS 120
MKREYLNS+KQ H+PKEVKVEK GEEF+VKVRCEKGGDRLV+VLEAF+KMGLNV++A+VS
Sbjct: 61 MKREYLNSVKQIHAPKEVKVEKVGEEFRVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVS 120
Query: 121 CTECFCMEAIAVAENHRLLNVSDITEAINVAIDGKLLAGNQHHKDIPENDAEI 174
C+ECF MEAIAVAE+ + LN+ DITEAIN AIDGK LA NQ K+ PE D EI
Sbjct: 121 CSECFSMEAIAVAEDEQSLNICDITEAINAAIDGKSLAANQQQKETPEKDDEI 173
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
AT1G29270.1 | 1.6e-22 | 40.91 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |
AT3G56220.1 | 2.3e-08 | 36.96 | transcription regulators | [more] |
AT2G40435.1 | 3.0e-08 | 33.12 | BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G5... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7UBN8 | 8.0e-78 | 89.08 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
E5GC31 | 8.0e-78 | 89.08 | Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1 | [more] |
A0A1S3B049 | 8.0e-78 | 89.08 | uncharacterized protein LOC103484437 OS=Cucumis melo OX=3656 GN=LOC103484437 PE=... | [more] |
A0A0A0KHW9 | 6.8e-77 | 89.14 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519710 PE=4 SV=1 | [more] |
A0A6J1IR65 | 7.5e-68 | 78.61 | uncharacterized protein LOC111478631 OS=Cucurbita maxima OX=3661 GN=LOC111478631... | [more] |