Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCTCCTAGAAACAAAGATAGCACGATTACAATAATGTGCATCCCACGTCTTCAAGTTTTGATGGCCAAGTATGAAGCAAATAAGTTGGTCAAGAAGCATGAAAAAAATGGTGAAGGTGTTAAACTAAAACGTCTCAATGCCATTGCTCGAGGTTCAACTCAAATCAACAATAATCAAGGAATGGAAACGAAAATATTAAAAGCTAACGACCATGTTGCGCTCAAGTTTAGTTCAAATGTTCATATAAAACCAAATAAGCAAATAGGAGGAAAAGCTCACGTACCTACCTCAAGAGTTCTTGATATAAAGGCGTCTAGAATGCAATTTAGTCGAGAGCAGATAAAGGAGATTTTTCAATACCATGATAGCGACAATGATGGTTTTCTCAACATAAAGGAGGTAACAAAAGCTTTTGGTTTCCTTGGCTCAATTCTTCCATTCTACAAAGCCTACCATGGGATGGTGTATGCTGATACTAATAATGATGGCCTTATCAGTGAGGATGAACTCGAAAAACTCATTGATTATGCGATTAAATTTATCAATAAGAAATGATTTTTTGAGCTACATAAACACGAATTTTATGTACTAAAGTAAATTTGCATTTTCAAGTCAAC
mRNA sequence
ATTCTCCTAGAAACAAAGATAGCACGATTACAATAATGTGCATCCCACGTCTTCAAGTTTTGATGGCCAAGTATGAAGCAAATAAGTTGGTCAAGAAGCATGAAAAAAATGGTGAAGGTGTTAAACTAAAACGTCTCAATGCCATTGCTCGAGGTTCAACTCAAATCAACAATAATCAAGGAATGGAAACGAAAATATTAAAAGCTAACGACCATGTTGCGCTCAAGTTTAGTTCAAATGTTCATATAAAACCAAATAAGCAAATAGGAGGAAAAGCTCACGTACCTACCTCAAGAGTTCTTGATATAAAGGCGTCTAGAATGCAATTTAGTCGAGAGCAGATAAAGGAGATTTTTCAATACCATGATAGCGACAATGATGGTTTTCTCAACATAAAGGAGGTAACAAAAGCTTTTGGTTTCCTTGGCTCAATTCTTCCATTCTACAAAGCCTACCATGGGATGGTGTATGCTGATACTAATAATGATGGCCTTATCAGTGAGGATGAACTCGAAAAACTCATTGATTATGCGATTAAATTTATCAATAAGAAATGATTTTTTGAGCTACATAAACACGAATTTTATGTACTAAAGTAAATTTGCATTTTCAAGTCAAC
Coding sequence (CDS)
TCTCCTAGAAACAAAGATAGCACGATTACAATAATGTGCATCCCACGTCTTCAAGTTTTGATGGCCAAGTATGAAGCAAATAAGTTGGTCAAGAAGCATGAAAAAAATGGTGAAGGTGTTAAACTAAAACGTCTCAATGCCATTGCTCGAGGTTCAACTCAAATCAACAATAATCAAGGAATGGAAACGAAAATATTAAAAGCTAACGACCATGTTGCGCTCAAGTTTAGTTCAAATGTTCATATAAAACCAAATAAGCAAATAGGAGGAAAAGCTCACGTACCTACCTCAAGAGTTCTTGATATAAAGGCGTCTAGAATGCAATTTAGTCGAGAGCAGATAAAGGAGATTTTTCAATACCATGATAGCGACAATGATGGTTTTCTCAACATAAAGGAGGTAACAAAAGCTTTTGGTTTCCTTGGCTCAATTCTTCCATTCTACAAAGCCTACCATGGGATGGTGTATGCTGATACTAATAATGATGGCCTTATCAGTGAGGATGAACTCGAAAAACTCATTGATTATGCGATTAAATTTATCAATAAGAAATGA
Protein sequence
SPRNKDSTITIMCIPRLQVLMAKYEANKLVKKHEKNGEGVKLKRLNAIARGSTQINNNQGMETKILKANDHVALKFSSNVHIKPNKQIGGKAHVPTSRVLDIKASRMQFSREQIKEIFQYHDSDNDGFLNIKEVTKAFGFLGSILPFYKAYHGMVYADTNNDGLISEDELEKLIDYAIKFINKK
Homology
BLAST of Bhi07G000047 vs. TAIR 10
Match:
AT3G50770.1 (calmodulin-like 41 )
HSP 1 Score: 42.0 bits (97), Expect = 6.2e-04
Identity = 32/120 (26.67%), Postives = 54/120 (45.00%), Query Frame = 0
Query: 56 NNNQGMETKILKANDHVALKFSSNVHIKPNKQIGGKAHVPTSRVLDIKASRM-QFSREQI 115
N+ + TK LK N L F N P + P S D + Q S+E++
Sbjct: 11 NSFKWFSTKTLKLN----LSF-QNRRRSPKSNSSSTLNSPRSNSDDNNNIKSHQASKEEL 70
Query: 116 KEIFQYHDSDNDGFLNIKEVTKAFGFLGSILPFYKAYHGMVYADTNNDGLISEDELEKLI 175
+++F + DSD DG ++ E+ FG +G + A + DT+ DG + ++ L+
Sbjct: 71 RQVFSHFDSDGDGKISAFELRHYFGSVGEYISHEAAQEAINEVDTDADGSLGFEDFVGLM 125
BLAST of Bhi07G000047 vs. ExPASy TrEMBL
Match:
A0A0A0KLF3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G067670 PE=4 SV=1)
HSP 1 Score: 236.1 bits (601), Expect = 1.2e-58
Identity = 123/173 (71.10%), Postives = 136/173 (78.61%), Query Frame = 0
Query: 12 MCIPRLQVLMAKYEANKLVKKHEKNGEGVKLKRLNAIARGSTQINNNQGMETKILKANDH 71
M IP+LQ+ AKYEA+KL+KK+E+NGEGV L N ARGSTQIN N+ M TK LK ND
Sbjct: 28 MHIPQLQMSKAKYEASKLMKKYEQNGEGVILSAFNDNARGSTQINTNREMATKKLKPNDD 87
Query: 72 VALKFSSNVHIKPNKQIGGKAHVPTSRVLDIKASRMQFSREQIKEIFQYHDSDNDGFLNI 131
VA K SSN +K N QI GKA VP RV D KAS MQFSREQIKEIFQY+DSD DGFLNI
Sbjct: 88 VAHKLSSNAQLKSNNQIRGKAQVPIKRVYDTKASNMQFSREQIKEIFQYYDSDRDGFLNI 147
Query: 132 KEVTKAFGFLGSILPFYKAYHGMVYADTNNDGLISEDELEKLIDYAIKFINKK 185
+EVTKAF LGSI PF KAYHGMVYADTN DGLI EDEL+KLI+YA KF+ KK
Sbjct: 148 REVTKAFALLGSIFPFNKAYHGMVYADTNKDGLIGEDELDKLINYANKFMKKK 200
BLAST of Bhi07G000047 vs. ExPASy TrEMBL
Match:
A0A0A0KIY4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G068170 PE=4 SV=1)
HSP 1 Score: 230.3 bits (586), Expect = 6.4e-57
Identity = 122/176 (69.32%), Postives = 140/176 (79.55%), Query Frame = 0
Query: 12 MCIPRLQVLMAKYEANKLVKKHEKNGEGVKLKRLNAIARGSTQINNNQGMETK-ILKAND 71
M I LQV AKYEA+KL+KKHE N EGV LK N I ST+INN Q M T+ ILK ++
Sbjct: 1 MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60
Query: 72 H-VALKFSSNVHIKPNKQIG-GKAHVPTSRVLDIKASRMQFSREQIKEIFQYHDSDNDGF 131
H VA +SN ++ P+KQ+G GKA V T+ VLDIKAS MQFSREQIKEIFQYHDSDNDGF
Sbjct: 61 HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120
Query: 132 LNIKEVTKAFGFLGSILPFYKAYHGMVYADTNNDGLISEDELEKLIDYAIKFINKK 185
LN++EVTKAF FLG+ILP YKAYHGMVYAD N DGLIS+DELEKL+DYA KF NK+
Sbjct: 121 LNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR 176
BLAST of Bhi07G000047 vs. ExPASy TrEMBL
Match:
A0A5A7VI66 (Putative calcium-binding protein CML11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G001550 PE=4 SV=1)
HSP 1 Score: 196.4 bits (498), Expect = 1.0e-46
Identity = 104/173 (60.12%), Postives = 127/173 (73.41%), Query Frame = 0
Query: 12 MCIPRLQVLMAKYEANKLVKKHEKNGEGVKLKRLNAIARGSTQINNNQGMETKILKANDH 71
M I +LQ MA YEA +K +EK+G+ V++K N + R STQI QG+ KILK++D
Sbjct: 1 MYISKLQASMAMYEARMFIKHYEKDGDAVQVKGFNDV-RSSTQI-GYQGIVPKILKSSDD 60
Query: 72 VALKFSSNVHIKPNKQIGGKAHVPTSRVLDIKASRMQFSREQIKEIFQYHDSDNDGFLNI 131
VA K S HI+P +Q GGK +R LDIK+S M FSR+QIKEIF+YHD++NDGFLNI
Sbjct: 61 VAHKLSLEAHIQPTQQTGGKGKKSIARALDIKSSNMSFSRQQIKEIFRYHDNNNDGFLNI 120
Query: 132 KEVTKAFGFLGSILPFYKAYHGMVYADTNNDGLISEDELEKLIDYAIKFINKK 185
E+TKAF FLGS+ PFYKA +GMVYAD N DGLISE EL+KLIDYA K I KK
Sbjct: 121 VELTKAFAFLGSMFPFYKACYGMVYADANADGLISEAELDKLIDYATKIIKKK 171
BLAST of Bhi07G000047 vs. ExPASy TrEMBL
Match:
A0A0A0KMQ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G067410 PE=4 SV=1)
HSP 1 Score: 194.5 bits (493), Expect = 3.9e-46
Identity = 103/173 (59.54%), Postives = 127/173 (73.41%), Query Frame = 0
Query: 12 MCIPRLQVLMAKYEANKLVKKHEKNGEGVKLKRLNAIARGSTQINNNQGMETKILKANDH 71
M I +LQ MA YEA+ L+K++EKNG+ VK+K + + R STQI N + + KILK +D
Sbjct: 1 MYISKLQASMAMYEASMLIKQYEKNGDAVKVKAFDDV-RSSTQIGNRESV-LKILKPSDG 60
Query: 72 VALKFSSNVHIKPNKQIGGKAHVPTSRVLDIKASRMQFSREQIKEIFQYHDSDNDGFLNI 131
VA K S HI+P ++ GGK +RVLD K+S M SRE+IKEIFQYHD++NDGFLN
Sbjct: 61 VAHKLRSEAHIQPTQRTGGKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGFLNR 120
Query: 132 KEVTKAFGFLGSILPFYKAYHGMVYADTNNDGLISEDELEKLIDYAIKFINKK 185
E+TKAF FLGS+ PFYKA +GMVYAD N DGLISE EL+KLIDYA K I KK
Sbjct: 121 MELTKAFAFLGSMFPFYKACYGMVYADANEDGLISEAELDKLIDYASKIIKKK 171
BLAST of Bhi07G000047 vs. ExPASy TrEMBL
Match:
A0A6J1EP72 (calmodulin-2/4-like OS=Cucurbita moschata OX=3662 GN=LOC111436455 PE=4 SV=1)
HSP 1 Score: 192.2 bits (487), Expect = 1.9e-45
Identity = 102/173 (58.96%), Postives = 123/173 (71.10%), Query Frame = 0
Query: 12 MCIPRLQVLMAKYEANKLVKKHEKNGEGVKLKRLNAIARGSTQINNNQGMETKILKANDH 71
M IP+LQ MAKYEA++++KK +NG+ V+LK N IAR STQ+ NNQ M +IL+ N +
Sbjct: 1 MFIPKLQASMAKYEASEMIKKSTRNGDNVQLKAFNGIARASTQV-NNQSMVPEILRDNKN 60
Query: 72 VALKFSSNVHIKPNKQIGGKAHVPTSRVLDIKASRMQFSREQIKEIFQYHDSDNDGFLNI 131
V KFSSN H +KAS MQFSREQ+KEIF+YHDSD DGFLNI
Sbjct: 61 VGPKFSSNTH--------------------LKASNMQFSREQMKEIFRYHDSDKDGFLNI 120
Query: 132 KEVTKAFGFLGSILPFYKAYHGMVYADTNNDGLISEDELEKLIDYAIKFINKK 185
+E+TKAF FLGSI+PF KA +GM YAD N DGLISE EL+KL+DYA KFI KK
Sbjct: 121 RELTKAFAFLGSIIPFEKASYGMTYADANKDGLISEAELDKLVDYAQKFIKKK 152
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
AT3G50770.1 | 6.2e-04 | 26.67 | calmodulin-like 41 | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KLF3 | 1.2e-58 | 71.10 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G067670 PE=4 SV=1 | [more] |
A0A0A0KIY4 | 6.4e-57 | 69.32 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G068170 PE=4 SV=1 | [more] |
A0A5A7VI66 | 1.0e-46 | 60.12 | Putative calcium-binding protein CML11 OS=Cucumis melo var. makuwa OX=1194695 GN... | [more] |
A0A0A0KMQ1 | 3.9e-46 | 59.54 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G067410 PE=4 SV=1 | [more] |
A0A6J1EP72 | 1.9e-45 | 58.96 | calmodulin-2/4-like OS=Cucurbita moschata OX=3662 GN=LOC111436455 PE=4 SV=1 | [more] |