CsaV3_6G005600 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G005600
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Low-density receptor-like protein
Location	chr6: 4796322 .. 4797890 (-)
RNA-Seq Expression	CsaV3_6G005600
Synteny	CsaV3_6G005600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTAAACTGCGAAACAACACTGCCCATAAGAGACAAAAATGTGAAATAGAAACAGCGATAAATACCAATGAGAAAACTCCGAGCTTCTCTTCTTCTTGCCTGATCTAACCATTTCAACTCCATCGCGGGAATCTCTGAGCTCTCTCTCTCTCTCTCTCTATCTATCTCTTTCTTCTAGACATAGCCACCGGAAACAATGGCGTCGTCGACGGCTAAGATTACGTTTCGTGTTATCATGGTGGTGATCCTCCTCCTCGTCTTGTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCTACTGTACATGATATTCGTCAGAACAAACAGACCGTCAAAGAAGGTGCGTTAATTGAATGCTAAATCTGTATGTTTATGCTTGTCTCAGTTCTGACTTAGAGTTTGAATTCTTCGTTCTGGACCTGCATTTCAGGCCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCATGATGAGTCGGACTCGGGCGTTCATGATGGAAATGATGGAAAGAAAGCCGGATCGGGTGCTATTCGGAGGCTGCTTCATCAGGTTTTGTGAAAATCTTAGTTATTTGAATTGTGATTAGTCCTGGAGAATTGAATTGTTTCACATGCATTAGTAAAGTTCAATTAGCGGATCTGGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCTTAATAACGTGTGTTATAATGACTGAATTAGCACCTACTGAATCTATTTAGTTAAAGGAAGGCAAAAAAAAAAAAAAAAAAAGATGAAGAAATCGTAATGCTTCGGCGTTCAGTCTTCACCGTTTCCATTATGCATCGTTAGTCACTCGGATGTGTGGATAGTGATATTTGTACTTAGATGTGGTGACCTACTGCTTGCGAAAACTCATTTTGACACACACACACACAAAAGAAAAAAAAAGAAGAAGATATTGTTAGTTTGTATCGAGCGGAATTGGCTGATAATGTGAATTGGAATTTTGTAGTTTAAGACTGAATGTTTGGTAAAGGTGGAAATGCGTACATAGGATGATGAACTAAAGATGACAATGGCCTTTTGTAATGGTTTTTGTTACTGTGAGTCCGTGACGGGCTAATTGGGCATTCTGGTGCTGAAGGAGCGATTTGAAACAAAATCAACTAATTGAAGTATAATGGAGAAGGCTTCAATAAAAAGATTGTACAAAATAATGATGGATGCCTCTGAACCTTTCTAGATAGATCCAAGACTTGGTGGAGCTGTAGTTAACCATAAAAACCCATAATGCCCTGCTGTTTAATCATGTTTCCTTGTGCTTTTTATTCATAAGCTCAAATGCAGCAACCATGACAAATCTTACTTGGCAGTGTGCCCTTCACTTGTGGCAACTCCCAAGTCCTAATGGTGAAATTAGTAGTTGCCTTTGTATACCTATCTCATCTCGTCCTCATAAACATGAGAAGGGAGATGAGAAAGGAATTCCTGCAGAATGTTTACACATAGATATGATAATCATGTCTGCATATGTGACAGTCTGATGTAACGTGGTTTTCTGTAGGAACATACACGCTAAAAT

mRNA sequence

ATGGCGTCGTCGACGGCTAAGATTACGTTTCGTGTTATCATGGTGGTGATCCTCCTCCTCGTCTTGTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCTACTGTACATGATATTCGTCAGAACAAACAGACCGTCAAAGAAGGCCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCATGATGAGTCGGACTCGGGCGTTCATGATGGAAATGATGGAAAGAAAGCCGGATCGGGTGCTATTCGGAGGCTGCTTCATCAGTTTAAGACTGAATGTTTGGTAAAGGTGGAAATGCGTACATAG

Coding sequence (CDS)

ATGGCGTCGTCGACGGCTAAGATTACGTTTCGTGTTATCATGGTGGTGATCCTCCTCCTCGTCTTGTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCTACTGTACATGATATTCGTCAGAACAAACAGACCGTCAAAGAAGGCCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCATGATGAGTCGGACTCGGGCGTTCATGATGGAAATGATGGAAAGAAAGCCGGATCGGGTGCTATTCGGAGGCTGCTTCATCAGTTTAAGACTGAATGTTTGGTAAAGGTGGAAATGCGTACATAG

Protein sequence

MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQFKTECLVKVEMRT*

Homology

[Close]

BLAST of CsaV3_6G005600 vs. NCBI nr
Match: XP_011656652.1 (uncharacterized protein LOC101217077 isoform X2 [Cucumis sativus] >KGN46185.2 hypothetical protein Csa_004879 [Cucumis sativus])

HSP 1 Score: 209.1 bits (531), Expect = 1.8e-50
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
           MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1   MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61  SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQFKTECLVKVEMRT 107
           SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQFKTECLVKVEMRT
Sbjct: 61  SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQFKTECLVKVEMRT 106

[Close]

BLAST of CsaV3_6G005600 vs. NCBI nr
Match: XP_031742567.1 (uncharacterized protein LOC101217077 isoform X1 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 2.4e-42
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 94
          SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 93

[Close]

BLAST of CsaV3_6G005600 vs. NCBI nr
Match: XP_011656653.1 (uncharacterized protein LOC101217077 isoform X3 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 2.4e-42
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 94
          SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 93

[Close]

BLAST of CsaV3_6G005600 vs. NCBI nr
Match: XP_008458514.1 (PREDICTED: uncharacterized protein LOC103497900 isoform X1 [Cucumis melo])

HSP 1 Score: 177.6 bits (449), Expect = 5.9e-41
Identity = 92/95 (96.84%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQFK 96
          SVGWYHDESDSGV DGNDGKKAGS AIRRLLHQ K
Sbjct: 61 SVGWYHDESDSGVQDGNDGKKAGSVAIRRLLHQVK 95

[Close]

BLAST of CsaV3_6G005600 vs. NCBI nr
Match: XP_008458516.1 (PREDICTED: uncharacterized protein LOC103497900 isoform X2 [Cucumis melo])

HSP 1 Score: 175.6 bits (444), Expect = 2.2e-40
Identity = 91/93 (97.85%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 94
          SVGWYHDESDSGV DGNDGKKAGS AIRRLLHQ
Sbjct: 61 SVGWYHDESDSGVQDGNDGKKAGSVAIRRLLHQ 93

[Close]

BLAST of CsaV3_6G005600 vs. ExPASy TrEMBL
Match: A0A0A0KBE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067370 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.2e-42
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 94
          SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 93

[Close]

BLAST of CsaV3_6G005600 vs. ExPASy TrEMBL
Match: A0A1S3C994 (uncharacterized protein LOC103497900 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497900 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.8e-41
Identity = 92/95 (96.84%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQFK 96
          SVGWYHDESDSGV DGNDGKKAGS AIRRLLHQ K
Sbjct: 61 SVGWYHDESDSGVQDGNDGKKAGSVAIRRLLHQVK 95

[Close]

BLAST of CsaV3_6G005600 vs. ExPASy TrEMBL
Match: A0A1S3C7I8 (uncharacterized protein LOC103497900 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497900 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.1e-40
Identity = 91/93 (97.85%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 94
          SVGWYHDESDSGV DGNDGKKAGS AIRRLLHQ
Sbjct: 61 SVGWYHDESDSGVQDGNDGKKAGSVAIRRLLHQ 93

[Close]

BLAST of CsaV3_6G005600 vs. ExPASy TrEMBL
Match: A0A6J1L4G6 (uncharacterized protein LOC111499061 OS=Cucurbita maxima OX=3661 GN=LOC111499061 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.6e-39
Identity = 86/93 (92.47%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTA+ITFRV+MVVILLLV+FYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTARITFRVVMVVILLLVVFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 94
          SVGWYHDESDSGV +GNDGK +GSGAIRRLLHQ
Sbjct: 61 SVGWYHDESDSGVREGNDGKNSGSGAIRRLLHQ 93

[Close]

BLAST of CsaV3_6G005600 vs. ExPASy TrEMBL
Match: A0A6J1H763 (uncharacterized protein LOC111460229 OS=Cucurbita moschata OX=3662 GN=LOC111460229 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.6e-39
Identity = 86/93 (92.47%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTA+ITFRV+MVVILLLV+FYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTARITFRVVMVVILLLVVFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 94
          SVGWYHDESDSGV +GNDGK +GSGAIRRLLHQ
Sbjct: 61 SVGWYHDESDSGVREGNDGKNSGSGAIRRLLHQ 93

[Close]

BLAST of CsaV3_6G005600 vs. TAIR 10
Match: AT5G18850.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 122.1 bits (305), Expect = 2.7e-28
Identity = 59/90 (65.56%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 2  ASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKS 61
          +S T +I FR ++++ L++VLFYVGRPLYWKISAT+HDIR NKQ+V+EG+SQIV EAQ+S
Sbjct: 6  SSPTTRIWFRTVILIALMVVLFYVGRPLYWKISATIHDIRHNKQSVREGISQIVHEAQRS 65

Query: 62 VGWYHDESDSGVHDGNDGKKAGSGAIRRLL 92
          VGWYHDESDSG  +G++ KK+G    RRLL
Sbjct: 66 VGWYHDESDSGFREGHN-KKSGIAVSRRLL 94

The following BLAST results are available for this feature:

BLAST of CsaV3_6G005600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656652.1	1.8e-50	100.00	uncharacterized protein LOC101217077 isoform X2 [Cucumis sativus] >KGN46185.2 hy...	[more]
XP_031742567.1	2.4e-42	100.00	uncharacterized protein LOC101217077 isoform X1 [Cucumis sativus]	[more]
XP_011656653.1	2.4e-42	100.00	uncharacterized protein LOC101217077 isoform X3 [Cucumis sativus]	[more]
XP_008458514.1	5.9e-41	96.84	PREDICTED: uncharacterized protein LOC103497900 isoform X1 [Cucumis melo]	[more]
XP_008458516.1	2.2e-40	97.85	PREDICTED: uncharacterized protein LOC103497900 isoform X2 [Cucumis melo]	[more]

BLAST of CsaV3_6G005600 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G005600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBE9	1.2e-42	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067370 PE=4 SV=1	[more]
A0A1S3C994	2.8e-41	96.84	uncharacterized protein LOC103497900 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3C7I8	1.1e-40	97.85	uncharacterized protein LOC103497900 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1L4G6	1.6e-39	92.47	uncharacterized protein LOC111499061 OS=Cucurbita maxima OX=3661 GN=LOC111499061...	[more]
A0A6J1H763	1.6e-39	92.47	uncharacterized protein LOC111460229 OS=Cucurbita moschata OX=3662 GN=LOC1114602...	[more]

BLAST of CsaV3_6G005600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18850.1	2.7e-28	65.56	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G005600.1	CsaV3_6G005600.1	mRNA