Chy9G164410 (gene) Cucumber (hystrix) v1

Overview


Name	Chy9G164410
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	40S ribosomal protein S23
Location	chrH09: 9683986 .. 9684945 (+)
RNA-Seq Expression	Chy9G164410
Synteny	Chy9G164410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCAACTCCCTGCTATGGTAATGACTGAGTTTTGTTTCATATGTGCACAGCCAATTTTTTCTAATCATGTAATATTAGTGATGATTGTATTTTCTTTGTTTGCATGTCGTGCAGGAAGACTCGTGGAATGGGAGCTGGTCGAAAGTTGAAATCTCACCGTAGAAGGCAGAGGTGGGCAGACAAGGCATATAAGAAATCTCATCTTGGTAACGAGTGGAAAAAGCCCTTTGCAGGGTCATCTCATGCAAAAGGGATTGTGCTTGAGAAGATGTAAAGCTACTGATTGATTCTTATGCTATTGTAGATGAATTACTCATGTTTACTTGTCTTTTAATAAAGTTGAATTTGCTAATACAGTGGAATTGAAGCCAAGCAGCCCAACTCCGCTATTAGAAAATGTGCTCGTGTTCAATTGATTAAAAATGGGAAGAAGATTGCTGCTTTTGTACCTAATGATGGCTGTCTCAATTACATTGAGGAAAATGTAAGTTCACCTAATTTGCTTATGCAGTGAATTATTAGTAATGTTTATGTTATTTTTCTTGATGGCCGCCTACATTAGTTTTTTTCCTAGAAATGAAATCTATGCCCAATCTTAAAAACTAGAAAACTATTTTCTGATTCTTACTAACTCATGTGTTGGTGGTCAAACAGTGGTAAAAAAAAGGGTCCTATCCTAACTTAGAGGGAACGAGTTCCATTAATGTCAATTTACCTATTATAGTATCCTAAGAGTTGTAAATATTATAGCGAATGAGATAGGTAAATTTGTACTGAAATTATAGGTTTAAATTTGTTATTGTTTTGTGTTAACAGGACGAGGTATTGATTGCGGGGTTTGGACGTAAGGGTCATGCTGTGGGAGATATTCCTGGTGTTAGGTTCAAGGTTGTTAAGGTTTCTGGAGTTTCACTTCTTGCTCTATTTAAAGAGAAGAAAGAAAAGCCAAGATCCTAG

mRNA sequence

ATGTTCAACTCCCTGCTATGGAAGACTCGTGGAATGGGAGCTGGTCGAAAGTTGAAATCTCACCGTAGAAGGCAGAGGTGGGCAGACAAGGCATATAAGAAATCTCATCTTGGTAACGAGTGGAAAAAGCCCTTTGCAGGGTCATCTCATGCAAAAGGGATTGTGCTTGAGAAGATTGGAATTGAAGCCAAGCAGCCCAACTCCGCTATTAGAAAATGTGCTCGTGTTCAATTGATTAAAAATGGGAAGAAGATTGCTGCTTTTGTACCTAATGATGGCTGTCTCAATTACATTGAGGAAAATGACGAGGTATTGATTGCGGGGTTTGGACGTAAGGGTCATGCTGTGGGAGATATTCCTGGTGTTAGGTTCAAGGTTGTTAAGGTTTCTGGAGTTTCACTTCTTGCTCTATTTAAAGAGAAGAAAGAAAAGCCAAGATCCTAG

Coding sequence (CDS)

ATGTTCAACTCCCTGCTATGGAAGACTCGTGGAATGGGAGCTGGTCGAAAGTTGAAATCTCACCGTAGAAGGCAGAGGTGGGCAGACAAGGCATATAAGAAATCTCATCTTGGTAACGAGTGGAAAAAGCCCTTTGCAGGGTCATCTCATGCAAAAGGGATTGTGCTTGAGAAGATTGGAATTGAAGCCAAGCAGCCCAACTCCGCTATTAGAAAATGTGCTCGTGTTCAATTGATTAAAAATGGGAAGAAGATTGCTGCTTTTGTACCTAATGATGGCTGTCTCAATTACATTGAGGAAAATGACGAGGTATTGATTGCGGGGTTTGGACGTAAGGGTCATGCTGTGGGAGATATTCCTGGTGTTAGGTTCAAGGTTGTTAAGGTTTCTGGAGTTTCACTTCTTGCTCTATTTAAAGAGAAGAAAGAAAAGCCAAGATCCTAG

Protein sequence

MFNSLLWKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS*

Homology

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BLAST of Chy9G164410 vs. ExPASy Swiss-Prot
Match: P46297 (40S ribosomal protein S23 OS=Fragaria ananassa OX=3747 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 1.3e-73
Identity = 137/140 (97.86%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 8   KTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN 67
           KTRGMGA RKLK+HRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN
Sbjct: 3   KTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN 62

Query: 68  SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 127
           SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV
Sbjct: 63  SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 122

Query: 128 KVSGVSLLALFKEKKEKPRS 148
           KVSGVSLLALFKEKKEKPRS
Sbjct: 123 KVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of Chy9G164410 vs. ExPASy Swiss-Prot
Match: Q9M5Z9 (40S ribosomal protein S23 OS=Euphorbia esula OX=3993 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 1.1e-72
Identity = 136/140 (97.14%), Postives = 137/140 (97.86%), Query Frame = 0


Query: 8   KTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN 67
           KT GMGA RKLKSHRR QRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN
Sbjct: 3   KTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN 62

Query: 68  SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 127
           SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV
Sbjct: 63  SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 122

Query: 128 KVSGVSLLALFKEKKEKPRS 148
           KVSGVSLLALFKEKKEKPRS
Sbjct: 123 KVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of Chy9G164410 vs. ExPASy Swiss-Prot
Match: P49201 (40S ribosomal protein S23-2 OS=Arabidopsis thaliana OX=3702 GN=RPS23B PE=2 SV=2)

HSP 1 Score: 268.5 bits (685), Expect = 4.6e-71
Identity = 135/140 (96.43%), Postives = 135/140 (96.43%), Query Frame = 0


Query: 8   KTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN 67
           KTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN
Sbjct: 3   KTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN 62

Query: 68  SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 127
           SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV
Sbjct: 63  SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 122

Query: 128 KVSGVSLLALFKEKKEKPRS 148
           KVSGVSLLALFKEKKEKPRS
Sbjct: 123 KVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of Chy9G164410 vs. ExPASy Swiss-Prot
Match: Q9SF35 (40S ribosomal protein S23-1 OS=Arabidopsis thaliana OX=3702 GN=RPS23A PE=2 SV=2)

HSP 1 Score: 259.6 bits (662), Expect = 2.1e-68
Identity = 132/140 (94.29%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 8   KTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN 67
           KTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQPN
Sbjct: 3   KTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPN 62

Query: 68  SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 127
           SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV
Sbjct: 63  SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 122

Query: 128 KVSGVSLLALFKEKKEKPRS 148
           KVSGVSLLALFKEKKEKPRS
Sbjct: 123 KVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of Chy9G164410 vs. ExPASy Swiss-Prot
Match: Q9GRJ3 (40S ribosomal protein S23 OS=Lumbricus rubellus OX=35632 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 5.6e-61
Identity = 114/141 (80.85%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 8   KTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 67
           K RG+   RKLK+HRR QRW DK YKKSHLG  WK  PF G+SHAKGIVLEK+G+EAKQP
Sbjct: 3   KPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQP 62

Query: 68  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 127
           NSAIRKC RVQLIKNGKKI AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKV
Sbjct: 63  NSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKV 122

Query: 128 VKVSGVSLLALFKEKKEKPRS 148
           VKV+ VSLLAL+K+KKE+PRS
Sbjct: 123 VKVASVSLLALYKQKKERPRS 143

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BLAST of Chy9G164410 vs. ExPASy TrEMBL
Match: A0A2G3C5W2 (40S ribosomal protein S23 OS=Capsicum chinense OX=80379 GN=BC332_15308 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.3e-73
Identity = 140/141 (99.29%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 7   WKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 66
           WKTRGMGAGRKLKSHRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP
Sbjct: 17  WKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 76

Query: 67  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 126
           NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV
Sbjct: 77  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 136

Query: 127 VKVSGVSLLALFKEKKEKPRS 148
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 137 VKVSGVSLLALFKEKKEKPRS 157

[Close]

BLAST of Chy9G164410 vs. ExPASy TrEMBL
Match: W9S7X2 (40S ribosomal protein S23 OS=Morus notabilis OX=981085 GN=L484_024448 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.3e-73
Identity = 140/141 (99.29%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 7   WKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 66
           WKTRG+GAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP
Sbjct: 39  WKTRGLGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 98

Query: 67  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 126
           NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV
Sbjct: 99  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 158

Query: 127 VKVSGVSLLALFKEKKEKPRS 148
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 159 VKVSGVSLLALFKEKKEKPRS 179

[Close]

BLAST of Chy9G164410 vs. ExPASy TrEMBL
Match: A0A2G5C510 (Uncharacterized protein (Fragment) OS=Aquilegia coerulea OX=218851 GN=AQUCO_10500021v1 PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 6.7e-73
Identity = 140/144 (97.22%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 4   SLLWKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA 63
           S++ KTRGMGAGRKLKSHRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA
Sbjct: 39  SIMGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA 98

Query: 64  KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVR 123
           KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVR
Sbjct: 99  KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVR 158

Query: 124 FKVVKVSGVSLLALFKEKKEKPRS 148
           FKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 159 FKVVKVSGVSLLALFKEKKEKPRS 182

[Close]

BLAST of Chy9G164410 vs. ExPASy TrEMBL
Match: A0A5P1ERS6 (Uncharacterized protein OS=Asparagus officinalis OX=4686 GN=A4U43_C05F4300 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 8.7e-73
Identity = 139/141 (98.58%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 7   WKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 66
           WKTRGMGAGRKLK+HRR QRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP
Sbjct: 47  WKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 106

Query: 67  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 126
           NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV
Sbjct: 107 NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 166

Query: 127 VKVSGVSLLALFKEKKEKPRS 148
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 167 VKVSGVSLLALFKEKKEKPRS 187

[Close]

BLAST of Chy9G164410 vs. ExPASy TrEMBL
Match: A0A068UE32 (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00023642001 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.5e-72
Identity = 139/144 (96.53%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 4   SLLWKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA 63
           +++ KTRGMGAGRKLKSHRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA
Sbjct: 40  AIMGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA 99

Query: 64  KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVR 123
           KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVR
Sbjct: 100 KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVR 159

Query: 124 FKVVKVSGVSLLALFKEKKEKPRS 148
           FKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 160 FKVVKVSGVSLLALFKEKKEKPRS 183

[Close]

BLAST of Chy9G164410 vs. NCBI nr
Match: PHU14103.1 (40S ribosomal protein S23 [Capsicum chinense])

HSP 1 Score: 281 bits (719), Expect = 4.49e-95
Identity = 140/141 (99.29%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 7   WKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 66
           WKTRGMGAGRKLKSHRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP
Sbjct: 17  WKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 76

Query: 67  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 126
           NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV
Sbjct: 77  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 136

Query: 127 VKVSGVSLLALFKEKKEKPRS 147
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 137 VKVSGVSLLALFKEKKEKPRS 157

[Close]

BLAST of Chy9G164410 vs. NCBI nr
Match: EXC16274.1 (40S ribosomal protein S23 [Morus notabilis])

HSP 1 Score: 281 bits (719), Expect = 9.55e-95
Identity = 140/141 (99.29%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 7   WKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 66
           WKTRG+GAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP
Sbjct: 39  WKTRGLGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 98

Query: 67  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 126
           NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV
Sbjct: 99  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 158

Query: 127 VKVSGVSLLALFKEKKEKPRS 147
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 159 VKVSGVSLLALFKEKKEKPRS 179

[Close]

BLAST of Chy9G164410 vs. NCBI nr
Match: KAF3624792.1 (40S ribosomal protein S23 [Capsicum annuum])

HSP 1 Score: 281 bits (719), Expect = 1.65e-94
Identity = 140/141 (99.29%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 7   WKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 66
           WKTRGMGAGRKLKSHRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP
Sbjct: 55  WKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 114

Query: 67  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 126
           NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV
Sbjct: 115 NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 174

Query: 127 VKVSGVSLLALFKEKKEKPRS 147
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 175 VKVSGVSLLALFKEKKEKPRS 195

[Close]

BLAST of Chy9G164410 vs. NCBI nr
Match: CAA3015173.1 (40S ribosomal S23 [Olea europaea subsp. europaea])

HSP 1 Score: 279 bits (714), Expect = 1.85e-94
Identity = 142/147 (96.60%), Postives = 142/147 (96.60%), Query Frame = 0


Query: 1   MFNSLLWKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIG 60
           M   L  KTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIG
Sbjct: 1   MLTLLCRKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIG 60

Query: 61  IEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIP 120
           IEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIP
Sbjct: 61  IEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIP 120

Query: 121 GVRFKVVKVSGVSLLALFKEKKEKPRS 147
           GVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 GVRFKVVKVSGVSLLALFKEKKEKPRS 147

[Close]

BLAST of Chy9G164410 vs. NCBI nr
Match: KAF3635488.1 (40S ribosomal protein S23 [Capsicum annuum])

HSP 1 Score: 281 bits (719), Expect = 2.49e-94
Identity = 140/141 (99.29%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 7   WKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 66
           WKTRGMGAGRKLKSHRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP
Sbjct: 67  WKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 126

Query: 67  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 126
           NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV
Sbjct: 127 NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 186

Query: 127 VKVSGVSLLALFKEKKEKPRS 147
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 187 VKVSGVSLLALFKEKKEKPRS 207

[Close]

BLAST of Chy9G164410 vs. TAIR 10
Match: AT5G02960.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 268.5 bits (685), Expect = 3.3e-72
Identity = 135/140 (96.43%), Postives = 135/140 (96.43%), Query Frame = 0


Query: 8   KTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN 67
           KTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN
Sbjct: 3   KTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN 62

Query: 68  SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 127
           SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV
Sbjct: 63  SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 122

Query: 128 KVSGVSLLALFKEKKEKPRS 148
           KVSGVSLLALFKEKKEKPRS
Sbjct: 123 KVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of Chy9G164410 vs. TAIR 10
Match: AT3G09680.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 259.6 bits (662), Expect = 1.5e-69
Identity = 132/140 (94.29%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 8   KTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN 67
           KTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQPN
Sbjct: 3   KTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPN 62

Query: 68  SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 127
           SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV
Sbjct: 63  SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 122

Query: 128 KVSGVSLLALFKEKKEKPRS 148
           KVSGVSLLALFKEKKEKPRS
Sbjct: 123 KVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of Chy9G164410 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 48.9 bits (115), Expect = 4.1e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 39  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 98
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 99  IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 129
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

[Close]

BLAST of Chy9G164410 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 48.9 bits (115), Expect = 4.1e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 39  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 98
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 99  IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 129
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

[Close]

BLAST of Chy9G164410 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 48.9 bits (115), Expect = 4.1e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 39  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 98
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 99  IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 129
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

The following BLAST results are available for this feature:

BLAST of Chy9G164410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46297	1.3e-73	97.86	40S ribosomal protein S23 OS=Fragaria ananassa OX=3747 GN=RPS23 PE=2 SV=1	[more]
Q9M5Z9	1.1e-72	97.14	40S ribosomal protein S23 OS=Euphorbia esula OX=3993 GN=RPS23 PE=2 SV=1	[more]
P49201	4.6e-71	96.43	40S ribosomal protein S23-2 OS=Arabidopsis thaliana OX=3702 GN=RPS23B PE=2 SV=2	[more]
Q9SF35	2.1e-68	94.29	40S ribosomal protein S23-1 OS=Arabidopsis thaliana OX=3702 GN=RPS23A PE=2 SV=2	[more]
Q9GRJ3	5.6e-61	80.85	40S ribosomal protein S23 OS=Lumbricus rubellus OX=35632 GN=RPS23 PE=2 SV=1	[more]

BLAST of Chy9G164410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G3C5W2	2.3e-73	99.29	40S ribosomal protein S23 OS=Capsicum chinense OX=80379 GN=BC332_15308 PE=3 SV=1	[more]
W9S7X2	2.3e-73	99.29	40S ribosomal protein S23 OS=Morus notabilis OX=981085 GN=L484_024448 PE=3 SV=1	[more]
A0A2G5C510	6.7e-73	97.22	Uncharacterized protein (Fragment) OS=Aquilegia coerulea OX=218851 GN=AQUCO_1050...	[more]
A0A5P1ERS6	8.7e-73	98.58	Uncharacterized protein OS=Asparagus officinalis OX=4686 GN=A4U43_C05F4300 PE=3 ...	[more]
A0A068UE32	1.5e-72	96.53	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00023642001 PE=3 ...	[more]

BLAST of Chy9G164410 vs. NCBI nr


Match Name	E-value	Identity	Description
PHU14103.1	4.49e-95	99.29	40S ribosomal protein S23 [Capsicum chinense]	[more]
EXC16274.1	9.55e-95	99.29	40S ribosomal protein S23 [Morus notabilis]	[more]
KAF3624792.1	1.65e-94	99.29	40S ribosomal protein S23 [Capsicum annuum]	[more]
CAA3015173.1	1.85e-94	96.60	40S ribosomal S23 [Olea europaea subsp. europaea]	[more]
KAF3635488.1	2.49e-94	99.29	40S ribosomal protein S23 [Capsicum annuum]	[more]

BLAST of Chy9G164410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02960.1	3.3e-72	96.43	Ribosomal protein S12/S23 family protein	[more]
AT3G09680.1	1.5e-69	94.29	Ribosomal protein S12/S23 family protein	[more]
ATCG00065.1	4.1e-06	36.26	ribosomal protein S12A	[more]
ATCG01230.1	4.1e-06	36.26	ribosomal protein S12B	[more]
ATCG00905.1	4.1e-06	36.26	ribosomal protein S12C	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005680	Ribosomal protein S23, eukaryotic/archaeal	TIGRFAM	TIGR00982	TIGR00982	coord: 11..146 e-value: 7.1E-53 score: 176.0
IPR005680	Ribosomal protein S23, eukaryotic/archaeal	CDD	cd03367	Ribosomal_S23	coord: 31..144 e-value: 1.72569E-75 score: 218.292
IPR006032	Ribosomal protein S12/S23	PFAM	PF00164	Ribosom_S12_S23	coord: 36..146 e-value: 7.5E-50 score: 167.3
IPR006032	Ribosomal protein S12/S23	PIRSF	PIRSF002133	RPS12p_RPS12a_RPS23e_RPS12o	coord: 21..147 e-value: 5.4E-33 score: 111.1
IPR006032	Ribosomal protein S12/S23	PANTHER	PTHR11652	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	coord: 6..147
IPR006032	Ribosomal protein S12/S23	PROSITE	PS00055	RIBOSOMAL_S12	coord: 64..71
None	No IPR available	GENE3D	2.40.50.140		coord: 30..147 e-value: 4.4E-47 score: 160.4
None	No IPR available	PANTHER	PTHR11652:SF59	BNACNNG03140D PROTEIN	coord: 6..147
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 25..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy9G164410.1	Chy9G164410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome