Chy2G037720 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G037720
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Regulator of chromosome condensation (RCC1) family protein
Location	chrH02: 12641067 .. 12641589 (-)
RNA-Seq Expression	Chy2G037720
Synteny	Chy2G037720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCTTTTAGGGGTAGTCTCTCTAGTGCTGTCAGCTCATCAAGCCAAGGTTCAGGAAATGATGGAGGTGTCCTTGGTGGTGGAACTCTTCGAGTTGGAAGTTCTTTTGATAGAAAAATCGATTCTTTGCTGCCAAAAGCCTTAGTCTGTAGTAGTACTTGATGTACAAAACATTGCCTGTGGTAATCGGCATGCTGCCTTGGTGATCAAACAAGGTGAAGTTTTCTCCTGGGGTGAAGAATATGGAGGCAGGCTTGGGCATGGAGGAGATTCTGATGCTCATCATCCAAAGTTTATTGATGCCCTGAGTAATTTAAAAATTGAGCTAGTTGCTTGTGGTGAATATCATACGTGTGCTGTAACACTTTCTAATGATCTGTATACATGGGGTGATGGCACCTATAATTCTGTCCTTGGGCATGGAAAAGATTTAAGTCACTGGATTCCAAGACGAGTAACTGGCCCCTTACCCTACATGTATCTTCCATCTCTTGTGGACCTTGTCATACAGCACTGGTGA

mRNA sequence

ATGGATGCTTTTAGGGGTAGTCTCTCTAGTGCTGTCAGCTCATCAAGCCAAGGTTCAGGAAATGATGGAGGTGTCCTTGGTGGTGGAACTCTTCGAGTTGGAATAGTACTTGATGTACAAAACATTGCCTGTGGTAATCGGCATGCTGCCTTGGTGATCAAACAAGGTGAAGTTTTCTCCTGGGGTGAAGAATATGGAGGCAGGCTTGGGCATGGAGGAGATTCTGATGCTCATCATCCAAAGTTTATTGATGCCCTGAGTAATTTAAAAATTGAGCTAGTTGCTTGTGGTGAATATCATACGTGTGCTGTAACACTTTCTAATGATCTGTATACATGGGGTGATGGCACCTATAATTCTGTCCTTGGGCATGGAAAAGATTTAAGTCACTGGATTCCAAGACGAGTAACTGGCCCCTTACCCTACATGTATCTTCCATCTCTTGTGGACCTTGTCATACAGCACTGGTGA

Coding sequence (CDS)

ATGGATGCTTTTAGGGGTAGTCTCTCTAGTGCTGTCAGCTCATCAAGCCAAGGTTCAGGAAATGATGGAGGTGTCCTTGGTGGTGGAACTCTTCGAGTTGGAATAGTACTTGATGTACAAAACATTGCCTGTGGTAATCGGCATGCTGCCTTGGTGATCAAACAAGGTGAAGTTTTCTCCTGGGGTGAAGAATATGGAGGCAGGCTTGGGCATGGAGGAGATTCTGATGCTCATCATCCAAAGTTTATTGATGCCCTGAGTAATTTAAAAATTGAGCTAGTTGCTTGTGGTGAATATCATACGTGTGCTGTAACACTTTCTAATGATCTGTATACATGGGGTGATGGCACCTATAATTCTGTCCTTGGGCATGGAAAAGATTTAAGTCACTGGATTCCAAGACGAGTAACTGGCCCCTTACCCTACATGTATCTTCCATCTCTTGTGGACCTTGTCATACAGCACTGGTGA

Protein sequence

MDAFRGSLSSAVSSSSQGSGNDGGVLGGGTLRVGIVLDVQNIACGNRHAALVIKQGEVFSWGEEYGGRLGHGGDSDAHHPKFIDALSNLKIELVACGEYHTCAVTLSNDLYTWGDGTYNSVLGHGKDLSHWIPRRVTGPLPYMYLPSLVDLVIQHW*

Homology

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BLAST of Chy2G037720 vs. ExPASy Swiss-Prot
Match: Q947D2 (PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=PRAF1 PE=1 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 8.4e-39
Identity = 86/183 (46.99%), Postives = 112/183 (61.20%), Query Frame = 0


Query: 2   DAFRGSLSSAVSSSSQGSGND-----------GGVLGGGTLRVG---------------- 61
           D FR S+SSA SSSS GS  D           G V+    ++VG                
Sbjct: 212 DGFRVSVSSAQSSSSHGSAADDSDALGDVYIWGEVICDNVVKVGIDKNASYLTTRTDVLV 271

Query: 62  -------IVLDVQNIACGNRHAALVIKQGEVFSWGEEYGGRLGHGGDSDAHHPKFIDAL- 121
                  IVLDV  IACG RHAA V +QGE+F+WGEE GGRLGHG   D  HP+ +++L 
Sbjct: 272 PKPLESNIVLDVHQIACGVRHAAFVTRQGEIFTWGEESGGRLGHGIGKDVFHPRLVESLT 331

Query: 122 SNLKIELVACGEYHTCAVTLSNDLYTWGDGTYN-SVLGHGKDLSHWIPRRVTGPLPYMYL 149
           +   ++ VACGE+HTCAVTL+ +LYTWGDGT+N  +LGHG D+SHWIP+R+ G L  +++
Sbjct: 332 ATSSVDFVACGEFHTCAVTLAGELYTWGDGTHNVGLLGHGSDISHWIPKRIAGSLEGLHV 391

[Close]

BLAST of Chy2G037720 vs. ExPASy Swiss-Prot
Match: Q9VR91 (Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster OX=7227 GN=HERC2 PE=1 SV=3)

HSP 1 Score: 85.5 bits (210), Expect = 5.8e-16
Identity = 40/93 (43.01%), Postives = 55/93 (59.14%), Query Frame = 0


Query: 45   GNRHAALVIKQGEVFSWGEEYGGRLGHGGDSDAHHPKFIDALSNLKIELVACGEYHTCAV 104
            G +HA  +   G+VFSWGE   G+LGHG  +    P+ ++AL   KI  VACG  H+ A+
Sbjct: 3081 GGKHALALTLDGKVFSWGEGEDGKLGHGNRTTLDKPRLVEALRAKKIRDVACGSSHSAAI 3140

Query: 105  TLSNDLYTWGDGTYNSVLGHGKDLSHWIPRRVT 138
            +   +LYTWG G Y   LGHG + +   P+ VT
Sbjct: 3141 SSQGELYTWGLGEYGR-LGHGDNTTQLKPKLVT 3172

[Close]

BLAST of Chy2G037720 vs. ExPASy Swiss-Prot
Match: O95714 (E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens OX=9606 GN=HERC2 PE=1 SV=2)

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-15
Identity = 40/92 (43.48%), Postives = 54/92 (58.70%), Query Frame = 0


Query: 45   GNRHAALVIKQGEVFSWGEEYGGRLGHGGDSDAHHPKFIDALSNLKIELVACGEYHTCAV 104
            G RHA  +   G+VFSWGE   G+LGH    +   P+ I+AL   +I  +ACG  H+ A+
Sbjct: 3055 GGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAAL 3114

Query: 105  TLSNDLYTWGDGTYNSVLGHGKDLSHWIPRRV 137
            T S +LYTWG G Y   LGHG + +   P+ V
Sbjct: 3115 TSSGELYTWGLGEYGR-LGHGDNTTQLKPKMV 3145

[Close]

BLAST of Chy2G037720 vs. ExPASy Swiss-Prot
Match: Q4U2R1 (E3 ubiquitin-protein ligase HERC2 OS=Mus musculus OX=10090 GN=Herc2 PE=1 SV=3)

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-15
Identity = 40/92 (43.48%), Postives = 54/92 (58.70%), Query Frame = 0


Query: 45   GNRHAALVIKQGEVFSWGEEYGGRLGHGGDSDAHHPKFIDALSNLKIELVACGEYHTCAV 104
            G RHA  +   G+VFSWGE   G+LGH    +   P+ I+AL   +I  +ACG  H+ A+
Sbjct: 3056 GGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAAL 3115

Query: 105  TLSNDLYTWGDGTYNSVLGHGKDLSHWIPRRV 137
            T S +LYTWG G Y   LGHG + +   P+ V
Sbjct: 3116 TSSGELYTWGLGEYGR-LGHGDNTTQLKPKMV 3146

[Close]

BLAST of Chy2G037720 vs. ExPASy Swiss-Prot
Match: Q9FN03 (Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana OX=3702 GN=UVR8 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-15
Identity = 46/120 (38.33%), Postives = 63/120 (52.50%), Query Frame = 0


Query: 18  GSGNDGGVLGGGTLRVGIVLDVQNIACGNRHAALVIKQGEVFSWGEEYGGRLGHGGDSDA 77
           G GN   +     ++    + ++ IACG+ H   V  +GEV SWG    G+LG G   D+
Sbjct: 101 GHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDS 160

Query: 78  HHPKFIDALSNLKIELVACGEYHTCAVTLSNDLYTWGDGTYNSVLGHGKDLSHWIPRRVT 137
             P+ I A   ++I++VA G  HT AVT   DLY WG G Y + LG G      +P RVT
Sbjct: 161 LVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGN-LGLGDRTDRLVPERVT 219

[Close]

BLAST of Chy2G037720 vs. ExPASy TrEMBL
Match: A0A0A0LZV1 (FYVE-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G627435 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.3e-63
Identity = 130/183 (71.04%), Postives = 139/183 (75.96%), Query Frame = 0


Query: 1   MDAFRGSLSSAVSSSSQGSGNDG----------------GVLGGGTLRVG---------- 60
           MDAFRGSLSSAVSSSSQGSGND                 GVLGGGT RVG          
Sbjct: 97  MDAFRGSLSSAVSSSSQGSGNDDCDALGDVFIWGEGTGEGVLGGGTRRVGSSFDSKIDSL 156

Query: 61  --------IVLDVQNIACGNRHAALVIKQGEVFSWGEEYGGRLGHGGDSDAHHPKFIDAL 120
                   +VLDVQNIACGNRHAALV KQGEVFSWGEEYGGRLGHGGDSDAHHPK IDAL
Sbjct: 157 LPKALESVVVLDVQNIACGNRHAALVTKQGEVFSWGEEYGGRLGHGGDSDAHHPKLIDAL 216

Query: 121 SNLKIELVACGEYHTCAVTLSNDLYTWGDGTYNS-VLGHGKDLSHWIPRRVTGPLPYMYL 149
           SNL IELVACGEYHTCAVTLS DLYTWGDGTYNS +LGHGKD+SHW+P+RVTGPL  +++
Sbjct: 217 SNLNIELVACGEYHTCAVTLSGDLYTWGDGTYNSGLLGHGKDVSHWVPKRVTGPLQGLHI 276

[Close]

BLAST of Chy2G037720 vs. ExPASy TrEMBL
Match: A0A5A7UQW6 (Zinc finger, FYVE-type OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G001740 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 9.6e-62
Identity = 128/183 (69.95%), Postives = 137/183 (74.86%), Query Frame = 0


Query: 1   MDAFRGSLSSAVSSSSQGSGNDG----------------GVLGGGTLRVG---------- 60
           MDAFR SLSSAVSSSSQGSGND                 GVLGGGT RVG          
Sbjct: 97  MDAFRVSLSSAVSSSSQGSGNDDCDALGDVFIWGEGTGEGVLGGGTRRVGSSFDSKIDSL 156

Query: 61  --------IVLDVQNIACGNRHAALVIKQGEVFSWGEEYGGRLGHGGDSDAHHPKFIDAL 120
                   +VLDVQNIACGNRHAALV KQGEVFSWGEEYGGRLGHGGDSD HHPK IDAL
Sbjct: 157 LPKALESVVVLDVQNIACGNRHAALVTKQGEVFSWGEEYGGRLGHGGDSDTHHPKLIDAL 216

Query: 121 SNLKIELVACGEYHTCAVTLSNDLYTWGDGTYNS-VLGHGKDLSHWIPRRVTGPLPYMYL 149
           SNL IELVACGEYHTCAVTLS DLYTWGDGTYNS +LGHGKD+SHW+P+RVTGPL  +++
Sbjct: 217 SNLNIELVACGEYHTCAVTLSGDLYTWGDGTYNSGLLGHGKDVSHWVPKRVTGPLQGLHV 276

[Close]

BLAST of Chy2G037720 vs. ExPASy TrEMBL
Match: A0A5D3DW32 (E3 ubiquitin-protein ligase HERC2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00470 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 9.6e-62
Identity = 128/183 (69.95%), Postives = 137/183 (74.86%), Query Frame = 0


Query: 1   MDAFRGSLSSAVSSSSQGSGNDG----------------GVLGGGTLRVG---------- 60
           MDAFR SLSSAVSSSSQGSGND                 GVLGGGT RVG          
Sbjct: 97  MDAFRVSLSSAVSSSSQGSGNDDCDALGDVFIWGEGTGEGVLGGGTRRVGSSFDSKIDSL 156

Query: 61  --------IVLDVQNIACGNRHAALVIKQGEVFSWGEEYGGRLGHGGDSDAHHPKFIDAL 120
                   +VLDVQNIACGNRHAALV KQGEVFSWGEEYGGRLGHGGDSD HHPK IDAL
Sbjct: 157 LPKALESVVVLDVQNIACGNRHAALVTKQGEVFSWGEEYGGRLGHGGDSDTHHPKLIDAL 216

Query: 121 SNLKIELVACGEYHTCAVTLSNDLYTWGDGTYNS-VLGHGKDLSHWIPRRVTGPLPYMYL 149
           SNL IELVACGEYHTCAVTLS DLYTWGDGTYNS +LGHGKD+SHW+P+RVTGPL  +++
Sbjct: 217 SNLNIELVACGEYHTCAVTLSGDLYTWGDGTYNSGLLGHGKDVSHWVPKRVTGPLQGLHV 276

[Close]

BLAST of Chy2G037720 vs. ExPASy TrEMBL
Match: A0A1S3BPQ5 (uncharacterized protein LOC103491987 OS=Cucumis melo OX=3656 GN=LOC103491987 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 9.6e-62
Identity = 128/183 (69.95%), Postives = 137/183 (74.86%), Query Frame = 0


Query: 1   MDAFRGSLSSAVSSSSQGSGNDG----------------GVLGGGTLRVG---------- 60
           MDAFR SLSSAVSSSSQGSGND                 GVLGGGT RVG          
Sbjct: 238 MDAFRVSLSSAVSSSSQGSGNDDCDALGDVFIWGEGTGEGVLGGGTRRVGSSFDSKIDSL 297

Query: 61  --------IVLDVQNIACGNRHAALVIKQGEVFSWGEEYGGRLGHGGDSDAHHPKFIDAL 120
                   +VLDVQNIACGNRHAALV KQGEVFSWGEEYGGRLGHGGDSD HHPK IDAL
Sbjct: 298 LPKALESVVVLDVQNIACGNRHAALVTKQGEVFSWGEEYGGRLGHGGDSDTHHPKLIDAL 357

Query: 121 SNLKIELVACGEYHTCAVTLSNDLYTWGDGTYNS-VLGHGKDLSHWIPRRVTGPLPYMYL 149
           SNL IELVACGEYHTCAVTLS DLYTWGDGTYNS +LGHGKD+SHW+P+RVTGPL  +++
Sbjct: 358 SNLNIELVACGEYHTCAVTLSGDLYTWGDGTYNSGLLGHGKDVSHWVPKRVTGPLQGLHV 417

[Close]

BLAST of Chy2G037720 vs. ExPASy TrEMBL
Match: A0A6J1HA75 (PH, RCC1 and FYVE domains-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111461517 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 4.0e-60
Identity = 126/183 (68.85%), Postives = 137/183 (74.86%), Query Frame = 0


Query: 1   MDAFRGSLSSAVSSSSQGSGNDG----------------GVLGGGTLRVG---------- 60
           MDAFR SLSSAVSSSSQGSG+D                 GVLGGGT RVG          
Sbjct: 238 MDAFRVSLSSAVSSSSQGSGHDDCDALGDVFIWGEGTGEGVLGGGTCRVGSSFDSKMDSL 297

Query: 61  --------IVLDVQNIACGNRHAALVIKQGEVFSWGEEYGGRLGHGGDSDAHHPKFIDAL 120
                   +VLDVQNIACGNRHAALV KQGEVFSWGEEYGGRLGHGGDSDA HPK IDAL
Sbjct: 298 LPKALESVVVLDVQNIACGNRHAALVTKQGEVFSWGEEYGGRLGHGGDSDAPHPKLIDAL 357

Query: 121 SNLKIELVACGEYHTCAVTLSNDLYTWGDGTYNS-VLGHGKDLSHWIPRRVTGPLPYMYL 149
           SNL IELVACGEYHTCAVTLS DLYTWGDGTYNS +LGHGK++SHW+P+RVTGPL  +++
Sbjct: 358 SNLNIELVACGEYHTCAVTLSGDLYTWGDGTYNSGLLGHGKEVSHWVPKRVTGPLQGLHV 417

[Close]

BLAST of Chy2G037720 vs. NCBI nr
Match: XP_004139058.3 (PH, RCC1 and FYVE domains-containing protein 1 [Cucumis sativus])

HSP 1 Score: 247 bits (630), Expect = 7.88e-73
Identity = 129/183 (70.49%), Postives = 138/183 (75.41%), Query Frame = 0


Query: 1   MDAFRGSLSSAVSSSSQGSGNDG----------------GVLGGGTLRVG---------- 60
           MDAFR SLSSAVSSSSQGSGND                 GVLGGGT RVG          
Sbjct: 238 MDAFRVSLSSAVSSSSQGSGNDDCDALGDVFIWGEGTGEGVLGGGTRRVGSSFDSKIDSL 297

Query: 61  --------IVLDVQNIACGNRHAALVIKQGEVFSWGEEYGGRLGHGGDSDAHHPKFIDAL 120
                   +VLDVQNIACGNRHAALV KQGEVFSWGEEYGGRLGHGGDSDAHHPK IDAL
Sbjct: 298 LPKALESVVVLDVQNIACGNRHAALVTKQGEVFSWGEEYGGRLGHGGDSDAHHPKLIDAL 357

Query: 121 SNLKIELVACGEYHTCAVTLSNDLYTWGDGTYNS-VLGHGKDLSHWIPRRVTGPLPYMYL 148
           SNL IELVACGEYHTCAVTLS DLYTWGDGTYNS +LGHGKD+SHW+P+RVTGPL  +++
Sbjct: 358 SNLNIELVACGEYHTCAVTLSGDLYTWGDGTYNSGLLGHGKDVSHWVPKRVTGPLQGLHI 417

[Close]

BLAST of Chy2G037720 vs. NCBI nr
Match: KGN66844.2 (hypothetical protein Csa_007427 [Cucumis sativus])

HSP 1 Score: 247 bits (630), Expect = 1.22e-72
Identity = 129/183 (70.49%), Postives = 138/183 (75.41%), Query Frame = 0


Query: 1   MDAFRGSLSSAVSSSSQGSGNDG----------------GVLGGGTLRVG---------- 60
           MDAFR SLSSAVSSSSQGSGND                 GVLGGGT RVG          
Sbjct: 238 MDAFRVSLSSAVSSSSQGSGNDDCDALGDVFIWGEGTGEGVLGGGTRRVGSSFDSKIDSL 297

Query: 61  --------IVLDVQNIACGNRHAALVIKQGEVFSWGEEYGGRLGHGGDSDAHHPKFIDAL 120
                   +VLDVQNIACGNRHAALV KQGEVFSWGEEYGGRLGHGGDSDAHHPK IDAL
Sbjct: 298 LPKALESVVVLDVQNIACGNRHAALVTKQGEVFSWGEEYGGRLGHGGDSDAHHPKLIDAL 357

Query: 121 SNLKIELVACGEYHTCAVTLSNDLYTWGDGTYNS-VLGHGKDLSHWIPRRVTGPLPYMYL 148
           SNL IELVACGEYHTCAVTLS DLYTWGDGTYNS +LGHGKD+SHW+P+RVTGPL  +++
Sbjct: 358 SNLNIELVACGEYHTCAVTLSGDLYTWGDGTYNSGLLGHGKDVSHWVPKRVTGPLQGLHI 417

[Close]

BLAST of Chy2G037720 vs. NCBI nr
Match: TYK27712.1 (E3 ubiquitin-protein ligase HERC2 [Cucumis melo var. makuwa])

HSP 1 Score: 245 bits (625), Expect = 1.30e-72
Identity = 128/183 (69.95%), Postives = 137/183 (74.86%), Query Frame = 0


Query: 1   MDAFRGSLSSAVSSSSQGSGNDG----------------GVLGGGTLRVG---------- 60
           MDAFR SLSSAVSSSSQGSGND                 GVLGGGT RVG          
Sbjct: 97  MDAFRVSLSSAVSSSSQGSGNDDCDALGDVFIWGEGTGEGVLGGGTRRVGSSFDSKIDSL 156

Query: 61  --------IVLDVQNIACGNRHAALVIKQGEVFSWGEEYGGRLGHGGDSDAHHPKFIDAL 120
                   +VLDVQNIACGNRHAALV KQGEVFSWGEEYGGRLGHGGDSD HHPK IDAL
Sbjct: 157 LPKALESVVVLDVQNIACGNRHAALVTKQGEVFSWGEEYGGRLGHGGDSDTHHPKLIDAL 216

Query: 121 SNLKIELVACGEYHTCAVTLSNDLYTWGDGTYNS-VLGHGKDLSHWIPRRVTGPLPYMYL 148
           SNL IELVACGEYHTCAVTLS DLYTWGDGTYNS +LGHGKD+SHW+P+RVTGPL  +++
Sbjct: 217 SNLNIELVACGEYHTCAVTLSGDLYTWGDGTYNSGLLGHGKDVSHWVPKRVTGPLQGLHV 276

[Close]

BLAST of Chy2G037720 vs. NCBI nr
Match: KAA0056025.1 (Zinc finger, FYVE-type [Cucumis melo var. makuwa])

HSP 1 Score: 245 bits (625), Expect = 1.30e-72
Identity = 128/183 (69.95%), Postives = 137/183 (74.86%), Query Frame = 0


Query: 1   MDAFRGSLSSAVSSSSQGSGNDG----------------GVLGGGTLRVG---------- 60
           MDAFR SLSSAVSSSSQGSGND                 GVLGGGT RVG          
Sbjct: 97  MDAFRVSLSSAVSSSSQGSGNDDCDALGDVFIWGEGTGEGVLGGGTRRVGSSFDSKIDSL 156

Query: 61  --------IVLDVQNIACGNRHAALVIKQGEVFSWGEEYGGRLGHGGDSDAHHPKFIDAL 120
                   +VLDVQNIACGNRHAALV KQGEVFSWGEEYGGRLGHGGDSD HHPK IDAL
Sbjct: 157 LPKALESVVVLDVQNIACGNRHAALVTKQGEVFSWGEEYGGRLGHGGDSDTHHPKLIDAL 216

Query: 121 SNLKIELVACGEYHTCAVTLSNDLYTWGDGTYNS-VLGHGKDLSHWIPRRVTGPLPYMYL 148
           SNL IELVACGEYHTCAVTLS DLYTWGDGTYNS +LGHGKD+SHW+P+RVTGPL  +++
Sbjct: 217 SNLNIELVACGEYHTCAVTLSGDLYTWGDGTYNSGLLGHGKDVSHWVPKRVTGPLQGLHV 276

[Close]

BLAST of Chy2G037720 vs. NCBI nr
Match: XP_008450356.1 (PREDICTED: uncharacterized protein LOC103491987 [Cucumis melo])

HSP 1 Score: 245 bits (625), Expect = 3.90e-72
Identity = 128/183 (69.95%), Postives = 137/183 (74.86%), Query Frame = 0


Query: 1   MDAFRGSLSSAVSSSSQGSGNDG----------------GVLGGGTLRVG---------- 60
           MDAFR SLSSAVSSSSQGSGND                 GVLGGGT RVG          
Sbjct: 238 MDAFRVSLSSAVSSSSQGSGNDDCDALGDVFIWGEGTGEGVLGGGTRRVGSSFDSKIDSL 297

Query: 61  --------IVLDVQNIACGNRHAALVIKQGEVFSWGEEYGGRLGHGGDSDAHHPKFIDAL 120
                   +VLDVQNIACGNRHAALV KQGEVFSWGEEYGGRLGHGGDSD HHPK IDAL
Sbjct: 298 LPKALESVVVLDVQNIACGNRHAALVTKQGEVFSWGEEYGGRLGHGGDSDTHHPKLIDAL 357

Query: 121 SNLKIELVACGEYHTCAVTLSNDLYTWGDGTYNS-VLGHGKDLSHWIPRRVTGPLPYMYL 148
           SNL IELVACGEYHTCAVTLS DLYTWGDGTYNS +LGHGKD+SHW+P+RVTGPL  +++
Sbjct: 358 SNLNIELVACGEYHTCAVTLSGDLYTWGDGTYNSGLLGHGKDVSHWVPKRVTGPLQGLHV 417

[Close]

BLAST of Chy2G037720 vs. TAIR 10
Match: AT5G19420.1 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain )

HSP 1 Score: 186.8 bits (473), Expect = 1.3e-47
Identity = 101/182 (55.49%), Postives = 118/182 (64.84%), Query Frame = 0


Query: 1   MDAFRGSLSSAVSSSSQGSGNDG----------------GVLGGGTLRVG---------- 60
           MDAFR SLSSA+SSSS GSG+D                 GVLGGG  RVG          
Sbjct: 242 MDAFRVSLSSAISSSSHGSGHDDGDTLGDVFMWGEGIGEGVLGGGNHRVGSSLEIKMDSL 301

Query: 61  --------IVLDVQNIACGNRHAALVIKQGEVFSWGEEYGGRLGHGGDSDAHHPKFIDAL 120
                   IVLDVQNIACG +HA LV KQGE FSWGEE  GRLGHG DS+  HPK IDAL
Sbjct: 302 LPKALESTIVLDVQNIACGGQHAVLVTKQGESFSWGEESEGRLGHGVDSNVQHPKLIDAL 361

Query: 121 SNLKIELVACGEYHTCAVTLSNDLYTWGDGTYNSVLGHGKDLSHWIPRRVTGPLPYMYLP 149
           +   IELVACGEYH+CAVTLS DLYTWG G +  +LGHG ++SHW+P+RV   +  +++ 
Sbjct: 362 NTTNIELVACGEYHSCAVTLSGDLYTWGKGDF-GILGHGNEVSHWVPKRVNFLMEGIHVS 421

[Close]

BLAST of Chy2G037720 vs. TAIR 10
Match: AT5G19420.2 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain )

HSP 1 Score: 186.8 bits (473), Expect = 1.3e-47
Identity = 101/182 (55.49%), Postives = 118/182 (64.84%), Query Frame = 0


Query: 1   MDAFRGSLSSAVSSSSQGSGNDG----------------GVLGGGTLRVG---------- 60
           MDAFR SLSSA+SSSS GSG+D                 GVLGGG  RVG          
Sbjct: 276 MDAFRVSLSSAISSSSHGSGHDDGDTLGDVFMWGEGIGEGVLGGGNHRVGSSLEIKMDSL 335

Query: 61  --------IVLDVQNIACGNRHAALVIKQGEVFSWGEEYGGRLGHGGDSDAHHPKFIDAL 120
                   IVLDVQNIACG +HA LV KQGE FSWGEE  GRLGHG DS+  HPK IDAL
Sbjct: 336 LPKALESTIVLDVQNIACGGQHAVLVTKQGESFSWGEESEGRLGHGVDSNVQHPKLIDAL 395

Query: 121 SNLKIELVACGEYHTCAVTLSNDLYTWGDGTYNSVLGHGKDLSHWIPRRVTGPLPYMYLP 149
           +   IELVACGEYH+CAVTLS DLYTWG G +  +LGHG ++SHW+P+RV   +  +++ 
Sbjct: 396 NTTNIELVACGEYHSCAVTLSGDLYTWGKGDF-GILGHGNEVSHWVPKRVNFLMEGIHVS 455

[Close]

BLAST of Chy2G037720 vs. TAIR 10
Match: AT5G12350.1 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain )

HSP 1 Score: 183.0 bits (463), Expect = 1.9e-46
Identity = 101/182 (55.49%), Postives = 117/182 (64.29%), Query Frame = 0


Query: 1   MDAFRGSLSSAVSSSSQGSGNDG----------------GVLGGGTLRVG---------- 60
           MDAFR S+SSAVSSSS GSG+D                 GVLGGG  RVG          
Sbjct: 238 MDAFRVSMSSAVSSSSHGSGHDDGDALGDVFIWGEGIGEGVLGGGNRRVGSSFDIKMDSL 297

Query: 61  --------IVLDVQNIACGNRHAALVIKQGEVFSWGEEYGGRLGHGGDSDAHHPKFIDAL 120
                   IVLDVQNIACG +HA LV KQGE FSWGEE  GRLGHG DS+   PK IDAL
Sbjct: 298 LPKALESTIVLDVQNIACGGQHAVLVTKQGESFSWGEESEGRLGHGVDSNIQQPKLIDAL 357

Query: 121 SNLKIELVACGEYHTCAVTLSNDLYTWGDGTYNSVLGHGKDLSHWIPRRVTGPLPYMYLP 149
           +   IELVACGE+H+CAVTLS DLYTWG G +  VLGHG ++SHW+P+RV   L  +++ 
Sbjct: 358 NTTNIELVACGEFHSCAVTLSGDLYTWGKGDF-GVLGHGNEVSHWVPKRVNFLLEGIHVS 417

[Close]

BLAST of Chy2G037720 vs. TAIR 10
Match: AT1G76950.1 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain )

HSP 1 Score: 161.4 bits (407), Expect = 6.0e-40
Identity = 86/183 (46.99%), Postives = 112/183 (61.20%), Query Frame = 0


Query: 2   DAFRGSLSSAVSSSSQGSGND-----------GGVLGGGTLRVG---------------- 61
           D FR S+SSA SSSS GS  D           G V+    ++VG                
Sbjct: 212 DGFRVSVSSAQSSSSHGSAADDSDALGDVYIWGEVICDNVVKVGIDKNASYLTTRTDVLV 271

Query: 62  -------IVLDVQNIACGNRHAALVIKQGEVFSWGEEYGGRLGHGGDSDAHHPKFIDAL- 121
                  IVLDV  IACG RHAA V +QGE+F+WGEE GGRLGHG   D  HP+ +++L 
Sbjct: 272 PKPLESNIVLDVHQIACGVRHAAFVTRQGEIFTWGEESGGRLGHGIGKDVFHPRLVESLT 331

Query: 122 SNLKIELVACGEYHTCAVTLSNDLYTWGDGTYN-SVLGHGKDLSHWIPRRVTGPLPYMYL 149
           +   ++ VACGE+HTCAVTL+ +LYTWGDGT+N  +LGHG D+SHWIP+R+ G L  +++
Sbjct: 332 ATSSVDFVACGEFHTCAVTLAGELYTWGDGTHNVGLLGHGSDISHWIPKRIAGSLEGLHV 391

[Close]

BLAST of Chy2G037720 vs. TAIR 10
Match: AT5G42140.1 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain )

HSP 1 Score: 159.5 bits (402), Expect = 2.3e-39
Identity = 85/182 (46.70%), Postives = 112/182 (61.54%), Query Frame = 0


Query: 2   DAFRGSLSSAVSSSSQGSGNDG---------------------------GVLGGGT---- 61
           DAFR S+SS  SSSS GS  D                            G LG  +    
Sbjct: 203 DAFRVSVSSVQSSSSHGSAPDDCDALGDVYIWGEVLCENVTKFGADKNIGYLGSRSDVLI 262

Query: 62  ---LRVGIVLDVQNIACGNRHAALVIKQGEVFSWGEEYGGRLGHGGDSDAHHPKFIDALS 121
              L   +VLDV +IACG +HAALV +QGEVF+WGE  GGRLGHG   D   P+ I++L+
Sbjct: 263 PKPLESNVVLDVHHIACGVKHAALVSRQGEVFTWGEASGGRLGHGMGKDVTGPQLIESLA 322

Query: 122 NLKIELVACGEYHTCAVTLSNDLYTWGDGTYNS-VLGHGKDLSHWIPRRVTGPLPYMYLP 149
              I+ VACGE+HTCAVT++ ++YTWGDGT+N+ +LGHG D+SHWIP+R++GPL  + + 
Sbjct: 323 ATSIDFVACGEFHTCAVTMTGEIYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQIA 382

The following BLAST results are available for this feature:

BLAST of Chy2G037720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q947D2	8.4e-39	46.99	PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9VR91	5.8e-16	43.01	Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster OX=7227 GN...	[more]
O95714	1.3e-15	43.48	E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens OX=9606 GN=HERC2 PE=1 SV=2	[more]
Q4U2R1	1.3e-15	43.48	E3 ubiquitin-protein ligase HERC2 OS=Mus musculus OX=10090 GN=Herc2 PE=1 SV=3	[more]
Q9FN03	1.3e-15	38.33	Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana OX=3702 GN=UVR8 PE=1 SV=1	[more]

BLAST of Chy2G037720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZV1	2.3e-63	71.04	FYVE-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G627435 P...	[more]
A0A5A7UQW6	9.6e-62	69.95	Zinc finger, FYVE-type OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3...	[more]
A0A5D3DW32	9.6e-62	69.95	E3 ubiquitin-protein ligase HERC2 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BPQ5	9.6e-62	69.95	uncharacterized protein LOC103491987 OS=Cucumis melo OX=3656 GN=LOC103491987 PE=...	[more]
A0A6J1HA75	4.0e-60	68.85	PH, RCC1 and FYVE domains-containing protein 1-like OS=Cucurbita moschata OX=366...	[more]

BLAST of Chy2G037720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139058.3	7.88e-73	70.49	PH, RCC1 and FYVE domains-containing protein 1 [Cucumis sativus]	[more]
KGN66844.2	1.22e-72	70.49	hypothetical protein Csa_007427 [Cucumis sativus]	[more]
TYK27712.1	1.30e-72	69.95	E3 ubiquitin-protein ligase HERC2 [Cucumis melo var. makuwa]	[more]
KAA0056025.1	1.30e-72	69.95	Zinc finger, FYVE-type [Cucumis melo var. makuwa]	[more]
XP_008450356.1	3.90e-72	69.95	PREDICTED: uncharacterized protein LOC103491987 [Cucumis melo]	[more]

BLAST of Chy2G037720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19420.1	1.3e-47	55.49	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain	[more]
AT5G19420.2	1.3e-47	55.49	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain	[more]
AT5G12350.1	1.9e-46	55.49	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain	[more]
AT1G76950.1	6.0e-40	46.99	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain	[more]
AT5G42140.1	2.3e-39	46.70	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009091	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	GENE3D	2.130.10.30		coord: 4..146 e-value: 1.7E-29 score: 104.9
IPR009091	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	SUPERFAMILY	50985	RCC1/BLIP-II	coord: 24..140
IPR000408	Regulator of chromosome condensation, RCC1	PFAM	PF00415	RCC1	coord: 56..104 e-value: 4.4E-12 score: 46.4
IPR000408	Regulator of chromosome condensation, RCC1	PROSITE	PS00626	RCC1_2	coord: 42..52
IPR000408	Regulator of chromosome condensation, RCC1	PROSITE	PS50012	RCC1_3	coord: 56..107 score: 14.7251
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..23
None	No IPR available	PANTHER	PTHR22870	REGULATOR OF CHROMOSOME CONDENSATION	coord: 31..145
None	No IPR available	PANTHER	PTHR22870:SF415	GTPASE BINDING PROTEIN, PUTATIVE-RELATED	coord: 31..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G037720.1	Chy2G037720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane