Chy1G006290 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G006290
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH01: 4415963 .. 4416793 (+)
RNA-Seq Expression	Chy1G006290
Synteny	Chy1G006290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCTGAAATTGAAAGTCAAAGAGAAACACTCACCAAAGAGTCCCTATCCACACCGAACCCCAGTTAAATTATAGCTCCGGAGGTCAATTAAGTAAACCGAGGTTACCTGATGAAAGTAAGTATTCAAATTAGTTTGCTGTTCCATTTGTCTCTGCAATGTTGATAGGCTCAAGAATCAGAAAGAAGTCTGTGTCTAACTTTCTTGTAATGTTATCAAGTGTCTGTCTTTCAACTAAGGGACAGTTCGCATATAATAATGAAGTAAATTAGGTTCTATTCAATCATGTGGGATTTAAATAATGAACAATAAGCTGAACTGATGTTGGAAGAGTGTACAGGAAGATCATCAAGATGTAATGAGAAACAGATTACTATTTTAGTATGTAGGATGAAAGAAAAATCATCAAGCTTTTCACTGAAGTGCATGTGTAATGAAACCTTCTTGTATCCATAGTATCAGGCAAAACTAATCTTTTATAATATAAACAGATCTGAACAAGTTTATTTTAATTTAAACATGAGTTGTAGACTTGGTAGAGAGGAAACATTGCCACATCAGTGTTTGTATCCTAATGGAAAATGCCTAAACATGCACTGATTCCTAAAAAGTTGAAGTTCCAAATGTCTCCCTTTGCTTAATGATATATATTAAGGAGATCAGAGGGAAAACACAAAAACACAGATTGCTCATTGAGCTAGCAGTTGGGTGGATAGATGGCTTAGCCAAGGATAATTTCAGTGCAAATGAAGGAATGTTTCTGTATGAATTTGGGTTGACCATGGAGATTGAGGCTATGGTTGTTATTGTTTTTTTAGAAAGGTTCTAA

mRNA sequence

ATGTTTCTGAAATTGAAAGTCAAAGAGAAACACTCACCAAAGAGTCCCTATCCACACCGAACCCCAGATGAAAGAAAAATCATCAAGCTTTTCACTGAAGTGCATGAGATCAGAGGGAAAACACAAAAACACAGATTGCTCATTGAGCTAGCAGTTGGGTGGATAGATGGCTTAGCCAAGGATAATTTCAGTGCAAATGAAGGAATGTTTCTGTATGAATTTGGGTTGACCATGGAGATTGAGGCTATGGTTGTTATTGTTTTTTTAGAAAGGTTCTAA

Coding sequence (CDS)

ATGTTTCTGAAATTGAAAGTCAAAGAGAAACACTCACCAAAGAGTCCCTATCCACACCGAACCCCAGATGAAAGAAAAATCATCAAGCTTTTCACTGAAGTGCATGAGATCAGAGGGAAAACACAAAAACACAGATTGCTCATTGAGCTAGCAGTTGGGTGGATAGATGGCTTAGCCAAGGATAATTTCAGTGCAAATGAAGGAATGTTTCTGTATGAATTTGGGTTGACCATGGAGATTGAGGCTATGGTTGTTATTGTTTTTTTAGAAAGGTTCTAA

Protein sequence

MFLKLKVKEKHSPKSPYPHRTPDERKIIKLFTEVHEIRGKTQKHRLLIELAVGWIDGLAKDNFSANEGMFLYEFGLTMEIEAMVVIVFLERF*

Homology

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BLAST of Chy1G006290 vs. NCBI nr
Match: KAE8645687.1 (hypothetical protein Csa_020364 [Cucumis sativus])

HSP 1 Score: 169 bits (429), Expect = 9.78e-53
Identity = 86/93 (92.47%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MFLKLKVKEKHSPKSPYPHRTPDERKIIKLFTEVHEIRGKTQKHRLLIELAVGWIDGLAK 60
          MF+KLKVKEKHSPKSPYPHRTPDERKIIKL TEVHEIRGKTQ+HRLLIEL VGWIDGLAK
Sbjct: 1  MFMKLKVKEKHSPKSPYPHRTPDERKIIKLSTEVHEIRGKTQEHRLLIELEVGWIDGLAK 60

Query: 61 DNFSANEGMFLYEFGLTMEIEAMVV-IVFLERF 92
          DNFSANEGMFLYEFGL MEIEAMVV IVF ERF
Sbjct: 61 DNFSANEGMFLYEFGLAMEIEAMVVVIVFSERF 93

The following BLAST results are available for this feature:

BLAST of Chy1G006290 vs.


Match Name	E-value	Identity	Description

BLAST of Chy1G006290 vs.


Match Name	E-value	Identity	Description

BLAST of Chy1G006290 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645687.1	9.78e-53	92.47	hypothetical protein Csa_020364 [Cucumis sativus]	[more]

BLAST of Chy1G006290 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G006290.1	Chy1G006290.1	mRNA