CmaCh17G012200 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh17G012200
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr17: 8418479 .. 8420544 (-)
RNA-Seq Expression	CmaCh17G012200
Synteny	CmaCh17G012200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATGTTCAATGTCTACAACTCGCTGTATGGTACAAATAAGGATGAAGAATACGTCAGTCGTTCTCTCTTGCTTGAAATCGATCCATTCAGATAGAAACTCAGAGTTAAGAGCACCTGGTTCAAAAAGAAAAGCTTCAATCAATCAACAATCACACAAGGAAAAGATTCATGGTGAAGGCAGAAAACAGAATGACCCAGCAACTTCTTCCCCTCAGGTATAATAAGGGTCACAGGAGCTCAATGTCCATTATCCTTTGACATACTGACATATAATGAAAGATTTTTTGAACATATTGCCTAATGGGTAAATTTTGTGGCCATGATTTGAGCCTTTCATTGAGATTATCTGCAAATATTCAGTTCAGCACGTGTACTGCTTCACTAGAACATGACCTCTTTTGTTTTCTACTCTCTGTTCCTTGATATGAAAGAGTGGAGAATATTTCCTCTGTTCCTAATGATCTACAATTTAGGTTTAAATTTAGATTTCATGAACTTCTATAAGATCTGTTCTGTCTCTGAATTTTTTTTTAATAATCATTTTGATTTTTACGATTATTTTGTCATAAATTATTTAATAGGCAAGTAACGTCGAAGCCCGAGGTATGGTTGATGTGACCAAGAGCTCGCATGGAAGTATGAGGTATGTAAGGTATATTAAATTGTTTTAAAATTTATATGATTTAAATTACAATATTGTGTTAAACCTAGATGTTTTTATATTTTGATAGGAAAAAATTCAAAAACTAAAATTAATATTTTTTTTTAATTTTAATGAGTGTTATTTTTTAATCTCATTTATGAAATTGAATGTTTTTATTATATGAAATCTGTATTTTATAAAAATAGTGATAATAATATGAATGTGGACATAAATTATTATAAAGAAAAAATAAAAGATACCATTTATGTAACAAGGCTTGATTAGATATAAAGGCAAAATTGTTGCCATAAATAAAAACAAAAACTTAATACTATAATTTTAATTTAATTAGACTAAGGTAATAATACATGATTGACTTGACTGACCATAATGAATTAAAATTCAATCTTTGTATCATAGGCTTTCACTTCTTTTTAGAAATAGCATTTTTTTTATGACCAAATTGGACATAATAATACCAAACCCAATTAATAATAATAATAATAATAATAATAATAATATGATAAAAGACAAAATGGCCTCAAAATTCAACCATAAATAATTGTTTTAACTAGACATGGATCAAACAAAAATCTTTCACAATCTATTTTAGAACTATTTTATTCTTACAAAAATATATTTATTTTTTGTGTTTTTAATAAAGAAATATTCTTGAATCCAACTTTACCCCTATTGTAAATTTACAACAGTTATAGGGTATTTTTGGTATGTGTTTATGATTCGGTTTATTATGGCTCCTTTCATAATTAGATAGCCAAAAATATATTTTTGTTCTCAAAATAAACAAAATAAATAAATAAATAAATAAATGAGGGGTTAAATTGGGAATAAGAAGTGAATCCTTTCCATTTTACAAAATAAAAACATTAGGAAAAGACTAATATACTCAACGGTTTATGGACCCATTGGGTCCCACGCACTGTCAGTCAGTCACCGACTACCAATGCACTGTGATTTTCTCTTCTCCTCACCCATTGCGTAAGTTAGCAAATGCTATTTTTTTAAGCTAAATAAATAAATAGAAAAAGCAAAAAGTTCTTTTTTTTTAAAAAAAAAGCGCAACAGTCAAAACTGCACTTTGAGCTACGTGTCAGCCCTTCAAAGCTGAAAGTATTACACGTGGCAAATTCTGATTGGGTCGCTTTTACAAATTGCTACTCTCTTCATTTCCTCGTGCCCAATTTCGTGGGCCCCACTCTTGGTGGGCGTTTTTTTATTGTTTTTTATATAAAAAGTATTATTATTATTTAATCAATTTTAAATGTTTGAATCTAAAATTTATAAAAAGTAAAATGTAAAGACTAAAATCAACTCATTATTAATTTGGTTAAATTCTTAAATTATAATTTATAAATTTTATATTTATTTCATTTCCCCAGATTTCAGAATGTATTTTAA

mRNA sequence

ATGTCATGTTCAATGTCTACAACTCGCTGTATGGTACAAATAAGGATGAAGAATACGTCAGTCGTTCTCTCTTGCTTGAAATCGATCCATTCAGATAGAAACTCAGAGTTAAGAGCACCTGGTTCAAAAAGAAAAGCTTCAATCAATCAACAATCACACAAGGAAAAGATTCATGGTGAAGGCAGAAAACAGAATGACCCAGCAACTTCTTCCCCTCAGGCAAGTAACGTCGAAGCCCGAGGTATGGTTGATGTGACCAAGAGCTCGCATGGAAGTATGAGACTAAGATTTCAGAATGTATTTTAA

Coding sequence (CDS)

ATGTCATGTTCAATGTCTACAACTCGCTGTATGGTACAAATAAGGATGAAGAATACGTCAGTCGTTCTCTCTTGCTTGAAATCGATCCATTCAGATAGAAACTCAGAGTTAAGAGCACCTGGTTCAAAAAGAAAAGCTTCAATCAATCAACAATCACACAAGGAAAAGATTCATGGTGAAGGCAGAAAACAGAATGACCCAGCAACTTCTTCCCCTCAGGCAAGTAACGTCGAAGCCCGAGGTATGGTTGATGTGACCAAGAGCTCGCATGGAAGTATGAGACTAAGATTTCAGAATGTATTTTAA

Protein sequence

MSCSMSTTRCMVQIRMKNTSVVLSCLKSIHSDRNSELRAPGSKRKASINQQSHKEKIHGEGRKQNDPATSSPQASNVEARGMVDVTKSSHGSMRLRFQNVF

Homology

[Close]

BLAST of CmaCh17G012200 vs. NCBI nr
Match: KAG6575949.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.3 bits (225), Expect = 5.2e-15
Identity = 49/65 (75.38%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 20  SVVLSCLKSIHSDRNSELRAPGSKRKASINQQSHKEKIHGEGRKQNDPATSSPQASNVEA 79
           ++VL   KSIHS+RN ELRAPG KRKASINQQSHKEKI GE RKQNDPATSSPQ +NVEA
Sbjct: 666 ALVLEVSKSIHSNRNLELRAPGLKRKASINQQSHKEKIQGEDRKQNDPATSSPQVNNVEA 725

Query: 80  RGMVD 85
           R  ++
Sbjct: 726 RRYIN 730

The following BLAST results are available for this feature:

BLAST of CmaCh17G012200 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh17G012200 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh17G012200 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575949.1	5.2e-15	75.38	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]

BLAST of CmaCh17G012200 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G012200.1	CmaCh17G012200.1	mRNA