CmaCh12G009600 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G009600
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	RNA-binding protein 42-like
Location	Cma_Chr12: 7539868 .. 7546648 (+)
RNA-Seq Expression	CmaCh12G009600
Synteny	CmaCh12G009600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAAATCGGAAAGTTCTGAGCCCTAATTTTCGAAGCTAATTTTGAGTTCTAACAGCTCTTTGGCCATGGCGGGTCCTTTCTCGGCTCCTTCTGCAGCTTCTTCCTCATCAGGTGCCCAATTTACGTATTCAAATGGTTCTTACTTTCCTTTACCTTTCCATCTCCAGCAGTCTGCTCCAGCAGCCCCTGCTCCCCAGTATCCCACTCCATATGTCGCTGCTCCGGCTCCTCCAGCAGTTCCACTTCCCGTCGCCTCCGTATATCCGACTCCTGCTCCTGCTTCCGCTCCGGCAGCTTACACTCTCCCTCAGTACCAGCAGGTAAGCAAAATCTGCATGCGATTGGAATTCGTGCTGCGGGATTGGGGTTTTGTTATTTTGTGGATAGGGTTTGCGGGAAAATGTTATTCGGATAGACAGGGATTTGTTTAGATGAATTTTTGGTGTAATTTTATCATTTTCCTTCTTATAAACAGGCCCAGCAACTATTTCAGAGGGATGCCCAAACGATAACTCCGGAAGCTCTTGAGAGTGTTAAAGCTGCGCTTGCAAGTAGTGAGATCGAGCATAAAGCAGAAACAAAAAAGAAAGCTATTCCTCGCAAAGCTGCTGGTCAATCTTGGGAGGACCCCACACTTACTGAGTGGCCTGAAAGTATGGATTGTCTACTTTATTTGATTTAATGTATTTGTAATTACTGGGCTTGTTTTGGCGTGCATTGTTTTTTCTTTTTCTTTTTTTTTCTATTAGGAATAGTTACATATAATTGATTTTGATGTTTGATATCAACTTTGCATGCATTGTCTACTTGAGATGATGAGGATCAACCACTTAAGAATTGTGTGAGCAGAAAGGGGGTAGAGGTTTCAAATGAAATGCATTAATTGAGTTGGTGAAAAGAAAAATGGGGATTAGATTCATTCTCATGGTGAACAAGCATGGCCAAACCCGCCTTGCTCATTTTTATGGACATCTTACTCTCGAAGAATGTCGAGCTCTTGAGGGTGAAATTGTTTGGAAATGCCTCCTTTGTTATAATAGGTTCCTTTTGTCAAGCATTGGTGATGAAAATGAACTGGGAATTTTGGAAATCATTCGCTTTTTGGTGGAAACCATGGACTGTCATTTTGGGCATGTGTGTGAGCTAGATATAATGTTCCATCTAGATAAAAAGCACATTTCTTAATGGAGCAAATGGTCATGAATGGATTTATTGTAGAAACAAGCGAAGTGTAAATCCTATCCCCAATACAATTGATGGATAAAACATCATAAAAGTTATGAATTTTTACCTTTGGTGCAAAGTTTTAGTAGGCCTATGTGTTGTATCAAATAAATGAATGAATTGATTTGATGTTGCTCTATTCAAACAAGAATTTGAAGACATTGATTTGAAGCGTGAGCGACATACAAGGTTAGAGAGACTAGTTGACATTGGTTGTCGTAGAAGGTCTCGTATTCAATATTGATTTTGAGGAAGCCTACGATCAGGTTGTTAGGAATTTCCAAACGAAGTCCCTAGAGAAAAAAAGGTTCAAATGGAAATGGAGAGATTGGATTGGAGTTGTTTAAGATCGATTGATTTCTCAATTTCTACAATGGGAGGCCGATTCACAAGATTTTTGTAGCTAGAGGCTTGAAAAGAGGATATCTTCTTCATCCCTTATCGTTCATTTTGATAGTTAATTTTTTGAGAAAGTTGGTCTTTAATAGTGTTGAGAAGGATTTAGTGGAGTGTTTTAGGATGGGTTTTGAGAGGCTCCATTTGTGATATCTCACATCGGTTGAGGAGGAGAACAAAATATCCTGTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGCATTTTAAAAACCTCGAGGGGAAGCCCGAAAGGGAAAACCCAAAGAGGACAATATCTGTTATCGGTGGGCTTGGGCCGTCACAAATGGCATCAGAGCCAGACACCGGGCGATGTGCTAGCAAGGAGGCTGAGCCCCAAAGGGGGGTGGACACGAGGCGGTGTGCCAGCAAGGACGCTGGGCCTCGAAGGGGGTGGATTGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTACCACATCGATTAGAGAAGGGAATGAGTGCCAACAAGGACGCTGGGCCTCGAAGGGGGTGGATTATGAGATCCCACATTGGTTGGGGAGGAGAACGAAACATCCTTTATAAGGGTGTAGAAACCTCTCCCTAGCAGACGCGTTTTAAAAACCTTGAAGGGAAGCCGAAAGGGAAAGTCCAAAGAGGACAATATCTGTTAGCGATGGGCTTGGGCTGTTACACCTTCTCTCGCACCTTTAGTTTGCTAATTGCATCCTCTTTTCTGCTCAGGGAAGGAGAGTTCCTTTAATAATCATTATGGATTTTTGTCCTCTTTGATGCTGTTTCAGGCCTTAAGATAGATAGAGGGAATAGTACTATCATTGACTTAATTATGATCCATCTAAAGTGGATTCTTGGGCATCTTCGGTGGGTTGTGAGGTTAGTCAACTCCCTTGTATGTATTTGGGTCTTCCCCTAAGGTGGTAGTCCAAAGAGTGGTTCTGGAACCCTGTGGTGGAGTAAATCCAAAAAGGGTTCTCTTCTTGGAAAAAAAAAGGTTTTTCTTTCTTTAAGCAAGGGAGACTTCCCTTGATTCAGTCTGTGTTGAGTAAGATTCCTATCTATTTCCCCTCTCAGTTCAAAATCTCAATTTCTGTGAGTATAAGCATAGAGCCTTATGAGGAACTTTCTACGGGATGGAGTTGATAAGGGTGAGGGTTCACATGTGGTAAGATGGGAGATTGTTTTGAAGTTGATGGTGGTTTAGAGTTTAGGCATTGATACTTTGAGATTATTTAATAAGACTTGTGCCAATTTTCTAGGGAATCTAATACTCTGGTGTAAAATCATTATGAGTAGGTATGGACTACACATTTTTGAGTGAGCACTAAGCAATGGATTAAAAGGTTTTGGCAAAAATATTTGGACCATTGTGGCTGAAGGCTTCCCTTAGCTTTTTTAGTTCATTAAGTGTTATGTTGAGAATGGGTCTGATACTTATTTTAGGGAGGATAAGCTGGGTTGGTGGCAAGCCTCTTTGTGAGCTGTTCCCACAATTGTGTCACTTGTTTGAGAAGAGGTTGCATTCAATCGCCTTGGCGTTGATCTCCTCCCTTCCTTCCCCTTCTCTTTTTTTGGACTTTCGTTATCCTTCTTTCTAATCATGAATATTTGGAGGTTGTGGGTTTTGGTGTACACTCTAAATTTTTAGATTGGTATGTAGTTTTAACTTTTATCTTCCTCAGCTAGAAGTATTTCTTACTTTGGATAAATGTCCATTGTTGTTTGCAGATGATTACCGTCTATTTTGTGGTGATCTTGGTAATGAAGTGAATGATGACGTGCTCTCTAAAGCATTCTCACGATTTCCTTCCTTTAACATGGCTAGAGTAAGTTTATTTTTTTCCAACATTCTACGTAATTCACCTTTTATTTTCACTTTTTTTGGCATTCTGCGCAATGAGTAGTTTCCTTGAAATGCTCTGATTTGTTTAAAAGGTGGTAATGCATCAGGTACCTCTGTATATACATTTGCATGTGGTTATGATCATGAAAGCATTTGAGGTTTCTGATATGTCCATGGGTTTCTATTCCTTGAATCTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTGTATTTTTTAGGTTTTANTCCTTGTCTAGTAAAAAAAAAAAAAACTTCATATTTGTTTTGTTTTGGTTCTTAAATTTTTAAATATTTTGTTTAGCTTAAGCTTTCAAATGTTCTTTTTTCACCCCTTAAACTGTGGATAATAAATTAATTTCGTCGTGGCTGTTTTTGCTTCTTTTATGTTTGTAATCATTTTGGATTTGCTAACCTACTATTTATTATTAATGTTTTCATTATTATGATGAGCTTTCACAGAGAGTAATGGAAGAACACAAAAGGGCATACAAAAAATCAGTCCGATAAGTTGACCTGCTATCTATGGCTTCAAAAACTTATTTATATGGATGTTTACTCGACAAACAAAGACATAAAGATATGGTTATCTTATGCAAATTTGAAGGACTAAGTAGAATATTTGAAAGACCAAAATGAATTAAGTATACAAGTTGCAGAAGTAAAATAGGATTCAAACCTATTTTTCATGTTTCTTAGATATTATTGTGAGGATCAAGAATTTTACTTAAGGAGGACATGATCATCTGATTGGGACTTGTGCAGCTGGAACCTCTGTATGAAGCTTTTATCCCTTAGAAATTACCAGGTTCATGGACTAGCTTGAGTTGTAATGATGGGCCCTGTGATTTCCCCATGTCGGTTCATATAGACCTGGCTTGTGGTCATTGTAGAGTCATACCATGAAATATCTTTATCTTCTCTCCCATTCCATATATGACATTGGGTGGGTCCTATCTTGGAAGAGTTGCTTGATTTTATGCTATCGTGTTGGTTATGTCACGGGTGGAATTCATAATTTATTTCTCACGAACATTTGCAGTTTTTGAAGAACAATCCATTTCTAGGGCATTGCCCAATTGTTTTAAAGGGCTCAAATACCATACGTGTGAACATGTTGGAGCCGACTTCTACCGATTTCATGGAGACAACTGCTCGACTCTATTACATTTAGTTGTCCAATATATTAGTTACTTTGCAAATTGACCTAATGTGTTGGGAGTGATCTGTACCGTTTGATGCATCAAAACAATTTTGATCCTTCTCTTGGAAAACATACTAGCTAACGACTTTGCAGAGTGACCCAAAATATTTCAATATTTTATTTATGGTTTACATTTGTGGATTACATTTTTCTCTGTGGAATATTTTCTTTTTGCCAACTGATTAACATAACATGCATATAATTGTTTTTAGGTTGTTAGAGATAAGCGAACTGGTAAAACCAAGGGCTATGGATTTGTTAGTTTCTCCAATCCTACTGACCTTGCTGGAGCACTTAAAGAAATGAATGGTAATTACTCTGATTTTAGTTTTATATGGATCCTGCAGTTCTTTTATCTCTCTGTTGGACTTCTGCTTCTTGTTCAAATCTCATGACATGCCTTGTGTATATCTGAATCCGTTCCTCTTTTTTTTTCTTTTTTTTTTCTTTTTTTCTGTTGAGAAACTTAGCTTTCATAACATTGTTATAATAAGAAAGAAACCCTTCCTCATTGGTGAAGTGCTATAGCTTGACAAGTTCAATTTAGGTTGTTATACAACATTGCTGTTCAAAAAATTTTTTTTCCTGTTTTTGTTTTTCTTTTTATCTCAGAAATATGTTGAAGACATATTTAAAATTTTAGATTTTGGAAGAAAATTGTTTTTTTGTATTCACAATTTGGTCAAGGAATTACTTTCTAAAAAAACACAATACATTGTTAGATAGACTCCAAATTTCTCTTATTACCTTCCCTGGAGGAATTTTCCCTACGAGTTATGAACGACACATCGATCTGCATGAACTAGCACGGTTGAATCTCATGGCCTAGTGCTCAAGCTTAGGCGTCATCTAGGGTGTGCGGTGGCTAGAGTTTGGAAAGAAGATCAGGAGTTCGACCTGCTTCAATATCTCCCTTATATTTTCTAGAAAAACTCTGAAATCATTTTATCTCCCATTGTTTAATCCTCAAAGCCTCTTCTTTTGACGTCTATTCTATTTACATTTATATGCTTAGACCCTTCTTGATCACAGGCAAGTACGTCGGAAATAGGCCGATAAAACTGAGAAAGAGTAATTGGAAGGAGAGGACAGACTACGAAGCCCTGGGAAGATACAAGGTAAAGTTACGATCCATGGGGGTGTTCTTTTGCACCTTTATTTCTTGTTTTTTTGTATTCAATGCTTTAAATCGATGATTTTTTTAATCTACTAATTTAATGACAGAACCACACTCAAAAGAAATCAAAGCTTCCAAAGAAGAGTATCTTGCACAAGTAAGAATGATCTGCATCCTTTTATTTCCGTTTACTCCCCGAACGTAATTGTCAATCAAGTGATCGGTATCATATGGAAAACCCATGTTCGAAAATTTGGTCAAGTTAGTATCTGTAGGGCTTTCTGTTCTCTGCTCCATTTAAGTGAAGAAGTGATTGTGCATTAAAGAACATGTTTACCTTGAAGGAATCAATCTTGTAAAGTGTTGTGAGCCATTCACCCTAGCTTTTTAATGAATCAATGTGAAATTATTACTGTCTATAATTTTTTTAGCTCATATGACAGCTTTTTTATACATATATTTACAAAAGATAGCAAAGATGCTTTTTAATAATGTCATGAATTCTTCTTGATGTCACATTTTAAAATAAATTATTGCATAGTTTGATTGATTATCTCTACATAATTACCAACTGGAGACTCTCCAG

mRNA sequence

TGAAAATCGGAAAGTTCTGAGCCCTAATTTTCGAAGCTAATTTTGAGTTCTAACAGCTCTTTGGCCATGGCGGGTCCTTTCTCGGCTCCTTCTGCAGCTTCTTCCTCATCAGGTGCCCAATTTACGTATTCAAATGGTTCTTACTTTCCTTTACCTTTCCATCTCCAGCAGTCTGCTCCAGCAGCCCCTGCTCCCCAGTATCCCACTCCATATGTCGCTGCTCCGGCTCCTCCAGCAGTTCCACTTCCCGTCGCCTCCGTATATCCGACTCCTGCTCCTGCTTCCGCTCCGGCAGCTTACACTCTCCCTCAGTACCAGCAGGCCCAGCAACTATTTCAGAGGGATGCCCAAACGATAACTCCGGAAGCTCTTGAGAGTGTTAAAGCTGCGCTTGCAAGTAGTGAGATCGAGCATAAAGCAGAAACAAAAAAGAAAGCTATTCCTCGCAAAGCTGCTGGTCAATCTTGGGAGGACCCCACACTTACTGAGTGGCCTGAAAATGATTACCGTCTATTTTGTGGTGATCTTGGTAATGAAGTGAATGATGACGTGCTCTCTAAAGCATTCTCACGATTTCCTTCCTTTAACATGGCTAGAGTTGTTAGAGATAAGCGAACTGGTAAAACCAAGGGCTATGGATTTGTTAGTTTCTCCAATCCTACTGACCTTGCTGGAGCACTTAAAGAAATGAATGGCAAGTACGTCGGAAATAGGCCGATAAAACTGAGAAAGAGTAATTGGAAGGAGAGGACAGACTACGAAGCCCTGGGAAGATACAAGAACCACACTCAAAAGAAATCAAAGCTTCCAAAGAAGAGTATCTTGCACAAGTAAGAATGATCTGCATCCTTTTATTTCCGTTTACTCCCCGAACGTAATTGTCAATCAAGTGATCGGTATCATATGGAAAACCCATGTTCGAAAATTTGGTCAAGTTAGTATCTGTAGGGCTTTCTGTTCTCTGCTCCATTTAAGTGAAGAAGTGATTGTGCATTAAAGAACATGTTTACCTTGAAGGAATCAATCTTGTAAAGTGTTGTGAGCCATTCACCCTAGCTTTTTAATGAATCAATGTGAAATTATTACTGTCTATAATTTTTTTAGCTCATATGACAGCTTTTTTATACATATATTTACAAAAGATAGCAAAGATGCTTTTTAATAATGTCATGAATTCTTCTTGATGTCACATTTTAAAATAAATTATTGCATAGTTTGATTGATTATCTCTACATAATTACCAACTGGAGACTCTCCAG

Coding sequence (CDS)

ATGGCGGGTCCTTTCTCGGCTCCTTCTGCAGCTTCTTCCTCATCAGGTGCCCAATTTACGTATTCAAATGGTTCTTACTTTCCTTTACCTTTCCATCTCCAGCAGTCTGCTCCAGCAGCCCCTGCTCCCCAGTATCCCACTCCATATGTCGCTGCTCCGGCTCCTCCAGCAGTTCCACTTCCCGTCGCCTCCGTATATCCGACTCCTGCTCCTGCTTCCGCTCCGGCAGCTTACACTCTCCCTCAGTACCAGCAGGCCCAGCAACTATTTCAGAGGGATGCCCAAACGATAACTCCGGAAGCTCTTGAGAGTGTTAAAGCTGCGCTTGCAAGTAGTGAGATCGAGCATAAAGCAGAAACAAAAAAGAAAGCTATTCCTCGCAAAGCTGCTGGTCAATCTTGGGAGGACCCCACACTTACTGAGTGGCCTGAAAATGATTACCGTCTATTTTGTGGTGATCTTGGTAATGAAGTGAATGATGACGTGCTCTCTAAAGCATTCTCACGATTTCCTTCCTTTAACATGGCTAGAGTTGTTAGAGATAAGCGAACTGGTAAAACCAAGGGCTATGGATTTGTTAGTTTCTCCAATCCTACTGACCTTGCTGGAGCACTTAAAGAAATGAATGGCAAGTACGTCGGAAATAGGCCGATAAAACTGAGAAAGAGTAATTGGAAGGAGAGGACAGACTACGAAGCCCTGGGAAGATACAAGAACCACACTCAAAAGAAATCAAAGCTTCCAAAGAAGAGTATCTTGCACAAGTAA

Protein sequence

MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPLPVASVYPTPAPASAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNHTQKKSKLPKKSILHK

Homology

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BLAST of CmaCh12G009600 vs. ExPASy Swiss-Prot
Match: Q0P5L0 (RNA-binding protein 42 OS=Bos taurus OX=9913 GN=RBM42 PE=2 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 4.2e-40
Identity = 101/192 (52.60%), Postives = 121/192 (63.02%), Query Frame = 0


Query: 52  APAPPAV---PLPVASVYPTPAPASAPAAY-----TLPQYQQAQQLFQRDAQTITPEALE 111
           APA PAV    LP+A   P P P   P         LP  +  + L  R      P   E
Sbjct: 241 APAGPAVIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRP--RPPRPE 300

Query: 112 SVKAALASSEIEHKAETKKKAIPRK-------AAGQSWEDPTLTEWPENDYRLFCGDLGN 171
                +A    E  +E KKK  P K       AAG SWEDP+L EW  +D+R+FCGDLGN
Sbjct: 301 PPPGLMALEVPEPLSEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGN 360

Query: 172 EVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNR 229
           EVNDD+L++AFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P+D   A++EMNGKYVG+R
Sbjct: 361 EVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSR 420

[Close]

BLAST of CmaCh12G009600 vs. ExPASy Swiss-Prot
Match: Q66KL9 (RNA-binding protein 42 OS=Xenopus tropicalis OX=8364 GN=rbm42 PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 3.6e-39
Identity = 103/226 (45.58%), Postives = 130/226 (57.52%), Query Frame = 0


Query: 28  PLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPLPVASVYPTPAPASAPAAYTLPQYQQAQ 87
           P P  ++   P  PAP  P P    P  P+ P     + PT   A AP  YT P  ++ +
Sbjct: 162 PPPLGMRAGPP--PAPVGPLPPPPRPVVPSAP----KMNPTVIQA-APTVYTAPPVRKPE 221

Query: 88  QLFQRDAQTITPEALESVKAALASSE------------------IEHKAETKKKAIPRK- 147
           +      + + P  L   K  L+  E                  +E   E KKK  P K 
Sbjct: 222 E------EIVEPPILPDEKETLSFEEAVIGPSMPEMEPVQPEVVLEPVQEDKKKTKPEKL 281

Query: 148 ------AAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 207
                 AAG SWED +L EW  +D+R+FCGDLGNEVNDD+L++AFSR+PSF  A+V+RDK
Sbjct: 282 KRCIRTAAGTSWEDQSLLEWESDDFRIFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDK 341

Query: 208 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKER 229
           RTGKTKGYGFVSF +P D   A++EMNGKYVG+RPIKLRKS WK+R
Sbjct: 342 RTGKTKGYGFVSFKDPNDYVRAMREMNGKYVGSRPIKLRKSQWKDR 374

[Close]

BLAST of CmaCh12G009600 vs. ExPASy Swiss-Prot
Match: Q9BTD8 (RNA-binding protein 42 OS=Homo sapiens OX=9606 GN=RBM42 PE=1 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 8.0e-39
Identity = 100/206 (48.54%), Postives = 125/206 (60.68%), Query Frame = 0


Query: 33  LQQSAPAAPAPQYPTPYVAAPAPPAVPLPVASVYPTPAPASAPAAYT---LPQYQQAQQL 92
           L++++ A        P   A   P++PL +A   P P P   P       LP  +  + L
Sbjct: 259 LEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELL 318

Query: 93  FQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRK-------AAGQSWEDPTLTEW 152
             R      P   E     +A    E   E KKK  P K       AAG SWEDP+L EW
Sbjct: 319 SLRPRP--RPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEW 378

Query: 153 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA 212
             +D+R+FCGDLGNEVNDD+L++AFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P+D  
Sbjct: 379 DADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYV 438

Query: 213 GALKEMNGKYVGNRPIKLRKSNWKER 229
            A++EMNGKYVG+RPIKLRKS WK+R
Sbjct: 439 RAMREMNGKYVGSRPIKLRKSMWKDR 462

[Close]

BLAST of CmaCh12G009600 vs. ExPASy Swiss-Prot
Match: Q91V81 (RNA-binding protein 42 OS=Mus musculus OX=10090 GN=Rbm42 PE=1 SV=2)

HSP 1 Score: 162.2 bits (409), Expect = 8.0e-39
Identity = 100/206 (48.54%), Postives = 125/206 (60.68%), Query Frame = 0


Query: 33  LQQSAPAAPAPQYPTPYVAAPAPPAVPLPVASVYPTPAPASAPAAYT---LPQYQQAQQL 92
           L++++ A        P   A   P++PL +A   P P P   P       LP  +  + L
Sbjct: 257 LEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELL 316

Query: 93  FQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRK-------AAGQSWEDPTLTEW 152
             R      P   E     +A    E   E KKK  P K       AAG SWEDP+L EW
Sbjct: 317 SLRPRP--RPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEW 376

Query: 153 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA 212
             +D+R+FCGDLGNEVNDD+L++AFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P+D  
Sbjct: 377 DADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYV 436

Query: 213 GALKEMNGKYVGNRPIKLRKSNWKER 229
            A++EMNGKYVG+RPIKLRKS WK+R
Sbjct: 437 RAMREMNGKYVGSRPIKLRKSMWKDR 460

[Close]

BLAST of CmaCh12G009600 vs. ExPASy Swiss-Prot
Match: Q6AXT7 (RNA-binding protein 42 OS=Rattus norvegicus OX=10116 GN=Rbm42 PE=1 SV=2)

HSP 1 Score: 162.2 bits (409), Expect = 8.0e-39
Identity = 100/206 (48.54%), Postives = 125/206 (60.68%), Query Frame = 0


Query: 33  LQQSAPAAPAPQYPTPYVAAPAPPAVPLPVASVYPTPAPASAPAAYT---LPQYQQAQQL 92
           L++++ A        P   A   P++PL +A   P P P   P       LP  +  + L
Sbjct: 257 LEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELL 316

Query: 93  FQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRK-------AAGQSWEDPTLTEW 152
             R      P   E     +A    E   E KKK  P K       AAG SWEDP+L EW
Sbjct: 317 SLRPRP--RPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEW 376

Query: 153 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA 212
             +D+R+FCGDLGNEVNDD+L++AFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P+D  
Sbjct: 377 DADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYV 436

Query: 213 GALKEMNGKYVGNRPIKLRKSNWKER 229
            A++EMNGKYVG+RPIKLRKS WK+R
Sbjct: 437 RAMREMNGKYVGSRPIKLRKSMWKDR 460

[Close]

BLAST of CmaCh12G009600 vs. ExPASy TrEMBL
Match: A0A6J1HLU5 (RNA-binding protein 42-like OS=Cucurbita maxima OX=3661 GN=LOC111465380 PE=4 SV=1)

HSP 1 Score: 493.0 bits (1268), Expect = 7.3e-136
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 0


Query: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL 60
           MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL
Sbjct: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL 60

Query: 61  PVASVYPTPAPASAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET 120
           PVASVYPTPAPASAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET
Sbjct: 61  PVASVYPTPAPASAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET 120

Query: 121 KKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR 180
           KKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR
Sbjct: 121 KKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR 180

Query: 181 DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNH 240
           DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNH
Sbjct: 181 DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNH 240

Query: 241 TQKKSKLPKKSILHK 256
           TQKKSKLPKKSILHK
Sbjct: 241 TQKKSKLPKKSILHK 255

[Close]

BLAST of CmaCh12G009600 vs. ExPASy TrEMBL
Match: A0A6J1FBP0 (RNA-binding protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111443965 PE=4 SV=1)

HSP 1 Score: 483.4 bits (1243), Expect = 5.8e-133
Identity = 252/255 (98.82%), Postives = 252/255 (98.82%), Query Frame = 0


Query: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL 60
           MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL
Sbjct: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL 60

Query: 61  PVASVYPTPAPASAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET 120
           PVASVYPTPAP  APAAY LPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET
Sbjct: 61  PVASVYPTPAP--APAAYNLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET 120

Query: 121 KKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR 180
           KKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR
Sbjct: 121 KKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR 180

Query: 181 DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNH 240
           DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNH
Sbjct: 181 DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNH 240

Query: 241 TQKKSKLPKKSILHK 256
           TQKKSKLPKKSILHK
Sbjct: 241 TQKKSKLPKKSILHK 253

[Close]

BLAST of CmaCh12G009600 vs. ExPASy TrEMBL
Match: A0A1S4DU47 (LOW QUALITY PROTEIN: RNA-binding protein 42 OS=Cucumis melo OX=3656 GN=LOC103485881 PE=4 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 1.1e-123
Identity = 236/255 (92.55%), Postives = 240/255 (94.12%), Query Frame = 0


Query: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL 60
           MAGP SAPS+ASSSS +QFTYSNGSYFPLPFHLQQSAPA   PQYP+PYVA P PP VPL
Sbjct: 1   MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYPSPYVAPPGPPPVPL 60

Query: 61  PVASVYPTPAPASAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET 120
           PVA VYP PAP   PA YTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET
Sbjct: 61  PVAPVYPAPAP--PPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET 120

Query: 121 KKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR 180
           KKKAIPRKAAGQSWEDPTL EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR
Sbjct: 121 KKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR 180

Query: 181 DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNH 240
           DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGR+KNH
Sbjct: 181 DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNH 240

Query: 241 TQKKSKLPKKSILHK 256
           TQKKSKLPKKSILHK
Sbjct: 241 TQKKSKLPKKSILHK 253

[Close]

BLAST of CmaCh12G009600 vs. ExPASy TrEMBL
Match: A0A6J1ET57 (RNA-binding protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111436257 PE=4 SV=1)

HSP 1 Score: 450.3 bits (1157), Expect = 5.4e-123
Identity = 235/255 (92.16%), Postives = 239/255 (93.73%), Query Frame = 0


Query: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL 60
           MAGP S PSA SSSSG+QFTYSNGSYFPLPFHLQQSAPA   PQYP+PYVAAP PPAVPL
Sbjct: 1   MAGPSSTPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60

Query: 61  PVASVYPTPAPASAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET 120
           PV SVYP P    APAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET
Sbjct: 61  PVTSVYPAP----APAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET 120

Query: 121 KKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR 180
           KKKAIPRKAAGQSWEDPTL EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR
Sbjct: 121 KKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR 180

Query: 181 DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNH 240
           DKRTGKTKGYGFVSFSNPTDLA ALKEMNGKYVGNRPIKLRKSNWKERTDY+AL R+KNH
Sbjct: 181 DKRTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNH 240

Query: 241 TQKKSKLPKKSILHK 256
           TQKKSKLPKKSILHK
Sbjct: 241 TQKKSKLPKKSILHK 251

[Close]

BLAST of CmaCh12G009600 vs. ExPASy TrEMBL
Match: A0A0A0LH39 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G075290 PE=4 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 9.2e-123
Identity = 235/255 (92.16%), Postives = 239/255 (93.73%), Query Frame = 0


Query: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL 60
           MAGP SAPS+ASSSS +QFTYSNGSYFPLPFHLQQSAPA   PQY +PYVA P PP VPL
Sbjct: 1   MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYSSPYVAPPGPPPVPL 60

Query: 61  PVASVYPTPAPASAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET 120
           PVA VYP PAP   PA YTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET
Sbjct: 61  PVAPVYPAPAP--PPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET 120

Query: 121 KKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR 180
           KKKAIPRKAAGQSWEDPTL EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR
Sbjct: 121 KKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR 180

Query: 181 DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNH 240
           DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGR+KNH
Sbjct: 181 DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNH 240

Query: 241 TQKKSKLPKKSILHK 256
           TQKKSKLPKKSILHK
Sbjct: 241 TQKKSKLPKKSILHK 253

[Close]

BLAST of CmaCh12G009600 vs. NCBI nr
Match: XP_022965496.1 (RNA-binding protein 42-like [Cucurbita maxima])

HSP 1 Score: 493.0 bits (1268), Expect = 1.5e-135
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 0


Query: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL 60
           MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL
Sbjct: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL 60

Query: 61  PVASVYPTPAPASAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET 120
           PVASVYPTPAPASAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET
Sbjct: 61  PVASVYPTPAPASAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET 120

Query: 121 KKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR 180
           KKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR
Sbjct: 121 KKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR 180

Query: 181 DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNH 240
           DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNH
Sbjct: 181 DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNH 240

Query: 241 TQKKSKLPKKSILHK 256
           TQKKSKLPKKSILHK
Sbjct: 241 TQKKSKLPKKSILHK 255

[Close]

BLAST of CmaCh12G009600 vs. NCBI nr
Match: XP_022937609.1 (RNA-binding protein 42-like [Cucurbita moschata] >XP_023538266.1 RNA-binding protein 42-like [Cucurbita pepo subsp. pepo] >KAG7020984.1 RNA-binding protein 42 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 483.4 bits (1243), Expect = 1.2e-132
Identity = 252/255 (98.82%), Postives = 252/255 (98.82%), Query Frame = 0


Query: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL 60
           MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL
Sbjct: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL 60

Query: 61  PVASVYPTPAPASAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET 120
           PVASVYPTPAP  APAAY LPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET
Sbjct: 61  PVASVYPTPAP--APAAYNLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET 120

Query: 121 KKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR 180
           KKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR
Sbjct: 121 KKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR 180

Query: 181 DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNH 240
           DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNH
Sbjct: 181 DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNH 240

Query: 241 TQKKSKLPKKSILHK 256
           TQKKSKLPKKSILHK
Sbjct: 241 TQKKSKLPKKSILHK 253

[Close]

BLAST of CmaCh12G009600 vs. NCBI nr
Match: KAG6586152.1 (RNA-binding protein 42, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 481.9 bits (1239), Expect = 3.5e-132
Identity = 251/255 (98.43%), Postives = 251/255 (98.43%), Query Frame = 0


Query: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL 60
           MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAP APAPQYPTPYVAAPAPPAVPL
Sbjct: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPGAPAPQYPTPYVAAPAPPAVPL 60

Query: 61  PVASVYPTPAPASAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET 120
           PVASVYPTPAP  APAAY LPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET
Sbjct: 61  PVASVYPTPAP--APAAYNLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET 120

Query: 121 KKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR 180
           KKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR
Sbjct: 121 KKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR 180

Query: 181 DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNH 240
           DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNH
Sbjct: 181 DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNH 240

Query: 241 TQKKSKLPKKSILHK 256
           TQKKSKLPKKSILHK
Sbjct: 241 TQKKSKLPKKSILHK 253

[Close]

BLAST of CmaCh12G009600 vs. NCBI nr
Match: XP_038890923.1 (RNA-binding protein 42-like [Benincasa hispida])

HSP 1 Score: 463.4 bits (1191), Expect = 1.3e-126
Identity = 242/255 (94.90%), Postives = 245/255 (96.08%), Query Frame = 0


Query: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL 60
           MAGP SAPSA SSSSG+QFTYSNGSYFPLPFHLQQSAPAA APQYP+PYVA P PPAVPL
Sbjct: 1   MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAAAAPQYPSPYVAPPGPPAVPL 60

Query: 61  PVASVYPTPAPASAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET 120
           PVASVYP PAP  APA YTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET
Sbjct: 61  PVASVYPPPAP--APAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET 120

Query: 121 KKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR 180
           KKKAIPRKAAGQSWEDPTL EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR
Sbjct: 121 KKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR 180

Query: 181 DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNH 240
           DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGR+KNH
Sbjct: 181 DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNH 240

Query: 241 TQKKSKLPKKSILHK 256
           TQKKSKLPKKSILHK
Sbjct: 241 TQKKSKLPKKSILHK 253

[Close]

BLAST of CmaCh12G009600 vs. NCBI nr
Match: XP_016899517.1 (PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 42 [Cucumis melo])

HSP 1 Score: 452.6 bits (1163), Expect = 2.3e-123
Identity = 236/255 (92.55%), Postives = 240/255 (94.12%), Query Frame = 0


Query: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL 60
           MAGP SAPS+ASSSS +QFTYSNGSYFPLPFHLQQSAPA   PQYP+PYVA P PP VPL
Sbjct: 1   MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYPSPYVAPPGPPPVPL 60

Query: 61  PVASVYPTPAPASAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET 120
           PVA VYP PAP   PA YTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET
Sbjct: 61  PVAPVYPAPAP--PPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET 120

Query: 121 KKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR 180
           KKKAIPRKAAGQSWEDPTL EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR
Sbjct: 121 KKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR 180

Query: 181 DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNH 240
           DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGR+KNH
Sbjct: 181 DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNH 240

Query: 241 TQKKSKLPKKSILHK 256
           TQKKSKLPKKSILHK
Sbjct: 241 TQKKSKLPKKSILHK 253

[Close]

BLAST of CmaCh12G009600 vs. TAIR 10
Match: AT3G04500.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 337.8 bits (865), Expect = 7.5e-93
Identity = 184/251 (73.31%), Postives = 202/251 (80.48%), Query Frame = 0


Query: 10  AASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPLPVAS----- 69
           ++SSSS +Q+TY+  SY+  P+            Q P PY AAP+ PAVP PVAS     
Sbjct: 9   SSSSSSSSQYTYAANSYYSAPY------------QPPQPYAAAPS-PAVPAPVASIPGAT 68

Query: 70  VYPTPAPASAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 129
           VYP P     PA Y  PQYQQA QLFQRDAQTITPEALE+VKAALASSE EHKAETKK+A
Sbjct: 69  VYPQPV-GPVPAVYAYPQYQQAHQLFQRDAQTITPEALENVKAALASSETEHKAETKKRA 128

Query: 130 IPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 189
           IPRKAAGQSWEDPTL+EWPENDYRLFCGDLGNEVNDDVLSKAF+RFP+FNMA+V+RDKRT
Sbjct: 129 IPRKAAGQSWEDPTLSEWPENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRT 188

Query: 190 GKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNHTQKK 249
           GKTKGYGFVSF NP DLA ALKEMNGKYVGNRPIKLRKS+WKERTD EA  R K+H+ KK
Sbjct: 189 GKTKGYGFVSFLNPADLAAALKEMNGKYVGNRPIKLRKSSWKERTDQEAAERQKHHSNKK 245

Query: 250 SKLPKKSILHK 256
            K  KKSILHK
Sbjct: 249 QKTVKKSILHK 245

[Close]

BLAST of CmaCh12G009600 vs. TAIR 10
Match: AT3G19130.1 (RNA-binding protein 47B )

HSP 1 Score: 72.0 bits (175), Expect = 7.7e-13
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 146 DYRLFCGDLGNEVNDDVLSKAFS-RFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGA 205
           D  +F GDL  +V D +L + FS R+PS   A+VV D  TG++KGYGFV F +  + + A
Sbjct: 201 DLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRA 260

Query: 206 LKEMNGKYVGNRPIKL 221
           L EMNG Y  NR +++
Sbjct: 261 LTEMNGAYCSNRQMRV 276

[Close]

BLAST of CmaCh12G009600 vs. TAIR 10
Match: AT5G54900.1 (RNA-binding protein 45A )

HSP 1 Score: 70.5 bits (171), Expect = 2.2e-12
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 140 TEWPENDYRLFCGDLGNEVNDDVLSKAFSR-FPSFNMARVVRDKRTGKTKGYGFVSFSNP 199
           TE P  D+ +F GDL  EV D +LS  F   + S   A+VV D+ TG++KGYGFV F++ 
Sbjct: 149 TEGP--DHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADE 208

Query: 200 TDLAGALKEMNGKYVGNRPIKL 221
            +   A+ EMNG+Y   RP+++
Sbjct: 209 NEQMRAMTEMNGQYCSTRPMRI 228

[Close]

BLAST of CmaCh12G009600 vs. TAIR 10
Match: AT1G47490.2 (RNA-binding protein 47C )

HSP 1 Score: 70.1 bits (170), Expect = 2.9e-12
Identity = 34/93 (36.56%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 146 DYRLFCGDLGNEVNDDVLSKAFS-RFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGA 205
           D  +F GDL  +V+D++L + FS ++PS   A+VV D  TG++KGYGFV F +  +   A
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255

Query: 206 LKEMNGKYVGNRPIKLRKSNWKERTDYEALGRY 238
           + EMNG    +R +++  +  ++   Y+  G Y
Sbjct: 256 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGY 288

[Close]

BLAST of CmaCh12G009600 vs. TAIR 10
Match: AT1G11650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 70.1 bits (170), Expect = 2.9e-12
Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 146 DYRLFCGDLGNEVNDDVLSKAF-SRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGA 205
           DY +F GDL  +V D +L + F + +PS   A+VV D+ TG+TKGYGFV FS+ ++   A
Sbjct: 154 DYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRA 213

Query: 206 LKEMNGKYVGNRPIKL 221
           + EMNG     RP+++
Sbjct: 214 MTEMNGVPCSTRPMRI 229

The following BLAST results are available for this feature:

BLAST of CmaCh12G009600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0P5L0	4.2e-40	52.60	RNA-binding protein 42 OS=Bos taurus OX=9913 GN=RBM42 PE=2 SV=1	[more]
Q66KL9	3.6e-39	45.58	RNA-binding protein 42 OS=Xenopus tropicalis OX=8364 GN=rbm42 PE=2 SV=1	[more]
Q9BTD8	8.0e-39	48.54	RNA-binding protein 42 OS=Homo sapiens OX=9606 GN=RBM42 PE=1 SV=1	[more]
Q91V81	8.0e-39	48.54	RNA-binding protein 42 OS=Mus musculus OX=10090 GN=Rbm42 PE=1 SV=2	[more]
Q6AXT7	8.0e-39	48.54	RNA-binding protein 42 OS=Rattus norvegicus OX=10116 GN=Rbm42 PE=1 SV=2	[more]

BLAST of CmaCh12G009600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HLU5	7.3e-136	100.00	RNA-binding protein 42-like OS=Cucurbita maxima OX=3661 GN=LOC111465380 PE=4 SV=...	[more]
A0A6J1FBP0	5.8e-133	98.82	RNA-binding protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111443965 PE=4 S...	[more]
A0A1S4DU47	1.1e-123	92.55	LOW QUALITY PROTEIN: RNA-binding protein 42 OS=Cucumis melo OX=3656 GN=LOC103485...	[more]
A0A6J1ET57	5.4e-123	92.16	RNA-binding protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111436257 PE=4 S...	[more]
A0A0A0LH39	9.2e-123	92.16	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G075290 PE=4 SV...	[more]

BLAST of CmaCh12G009600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022965496.1	1.5e-135	100.00	RNA-binding protein 42-like [Cucurbita maxima]	[more]
XP_022937609.1	1.2e-132	98.82	RNA-binding protein 42-like [Cucurbita moschata] >XP_023538266.1 RNA-binding pro...	[more]
KAG6586152.1	3.5e-132	98.43	RNA-binding protein 42, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_038890923.1	1.3e-126	94.90	RNA-binding protein 42-like [Benincasa hispida]	[more]
XP_016899517.1	2.3e-123	92.55	PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 42 [Cucumis melo]	[more]

BLAST of CmaCh12G009600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04500.1	7.5e-93	73.31	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G19130.1	7.7e-13	46.05	RNA-binding protein 47B	[more]
AT5G54900.1	2.2e-12	43.90	RNA-binding protein 45A	[more]
AT1G47490.2	2.9e-12	36.56	RNA-binding protein 47C	[more]
AT1G11650.2	2.9e-12	44.74	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 148..221 e-value: 2.6E-19 score: 80.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 149..219 e-value: 8.2E-18 score: 64.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 147..225 score: 16.124914
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 82..221 e-value: 3.0E-23 score: 84.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 236..255
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 240..255
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..138
None	No IPR available	PANTHER	PTHR47640	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	coord: 37..255
None	No IPR available	PANTHER	PTHR47640:SF11	RNA-BINDING PROTEIN 42-LIKE	coord: 37..255
IPR034215	RBM42, RNA recognition motif	CDD	cd12383	RRM_RBM42	coord: 141..223 e-value: 3.25939E-56 score: 172.792
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 130..227

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G009600.1	CmaCh12G009600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0017069	snRNA binding
molecular_function	GO:0003676	nucleic acid binding