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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. CATTCCAAGTTACAAGTTTTGTGGGAGCAAAGCAAAAGGGTGAGAGGGGCAAGGAAGAAACAAGAAAGAGATTGAAGAAACCAAACAAATCCCAATTTCCTGCCTCTTTCTGGGATTGCTAAAACAAAATCAGAGCAACACAACACACAAACAACCGATTCCATTAACCCTTTCTGAAAGCAATGTATAGCAGAAATCGAAATTTCATACTGATAATCGAGGCCAGAAATATGCTCCTCACACGGAAAGATTCCTCGCCAGAATCCCTTCAAACGAAATCCCAGGTCCAAACGCCAGAATCAATCCCCATTCCTCAATTTCCCCACCACCCATCTTCGTCTTCAAGCTCTCATCCACCATGTATTCCAACACATACACGATTGTGTTACTGCTCGCATTTCCATAGTCCATCAGAGCTTGCCGGCTCGCCTTCAGCTTCTCAGGTAACAGTTCCGAGTCTCTTCTCTAGCTTATTCAGTATCGCTGGCTCACCTGGATGTCTGCCCAAAAAATTTTGTTGTATTCTTTCTCGTGCAGCCCAACTGTTTGAAGAAATGTCTCACAGAAACTTTCGATGTTATCTTTTCGATTATCTGAGGAAGTTCTCTTGCTATTGTGAAGCTAATACCCTCCTCTGACATTCTCCCATCGATTACGTTCTGGGTGTTTGGAATGAATTTCTGGGTTGCGGTGTGCAGCTCAAAGAGTGGCCGTTCAATGGGCCAAAACAGGGTCCGCGCCAATTAGCATTGCCCCAGCACCATCCCCAAATAGCGCCACGCCTACCAGATCGTATGGACGACGGGCACTTGATGGCTTGTAGCTGTAAAGAAATCGATGTTTATGTTTAAATTCTGAGAACAAATGGTGTATGAGCTTTTGGGGGCGTTGAAAAGTTACCCAATAATGGTGGTTTCAGAGGTGACAAGCAGAACTCGGCTTCCGGGGTTGTTTTCAGCCAAGTCTTTGACGACTCTAAGGCCTGCCACGCCTCCAGAGCAACCCATGAAGTAAAGCATGAACCGTTGGGTGTGAGGGCTGAGTCCAAGGCCTCTTGCTAGGAAGAGATCACCACCAGGCAGGCGAGCTTCACTTGAAGAGACATAGACTAAATGGGTAATGTGTGAAAGTGGCCTTCCCCAGTTCTTAATAGCAGCTTGTGAGGCTTCAATGGCCATGTCTGTCACAGCTTTGTTGCAGATCTCCAGTCTTTGCTTTATGGTTGCTTGGCCTTCCATTGCCATCTCTGGGTGCTTCTTCAGGATCTCTTCTGACATCACCACGTATCTAGTTTTGACTGATGTTGTCTTGCCTGTGGATTGCCATTAGAAGATGACAGTTATTTCAGTTAAAGAGGAGCAATTTTAACAACCACTAGCATCTATCAGCTTCAACTAAATGTCAATCTCAGGTATGTAAACCAAAACTCAGATGAAATCATCTTAGAAGTGAAATTATAAAATTCTGAAATCATCTTAGAAGTTCTATCCGATCAATGAAATATGAAATTTTATTTTGGATTTAGAATCTCTGCACCACCCCTGCCCCCGCCCCCGCCTGAGTAAAGAAAAG mRNA sequence CATTCCAAGTTACAAGTTTTGTGGGAGCAAAGCAAAAGGGTGAGAGGGGCAAGGAAGAAACAAGAAAGAGATTGAAGAAACCAAACAAATCCCAATTTCCTGCCTCTTTCTGGGATTGCTAAAACAAAATCAGAGCAACACAACACACAAACAACCGATTCCATTAACCCTTTCTGAAAGCAATGTATAGCAGAAATCGAAATTTCATACTGATAATCGAGGCCAGAAATATGCTCCTCACACGGAAAGATTCCTCGCCAGAATCCCTTCAAACGAAATCCCAGGTCCAAACGCCAGAATCAATCCCCATTCCTCAATTTCCCCACCACCCATCTTCGTCTTCAAGCTCTCATCCACCATGTATTCCAACACATACACGATTGTGTTACTGCTCGCATTTCCATAGTCCATCAGAGCTTGCCGGCTCGCCTTCAGCTTCTCAGCTCAAAGAGTGGCCGTTCAATGGGCCAAAACAGGGTCCGCGCCAATTAGCATTGCCCCAGCACCATCCCCAAATAGCGCCACGCCTACCAGATCGTATGGACGACGGGCACTTGATGGCTTGTAGCTGTAAAGAAATCGATTTACCCAATAATGGTGGTTTCAGAGGTGACAAGCAGAACTCGGCTTCCGGGGTTGTTTTCAGCCAAGTCTTTGACGACTCTAAGGCCTGCCACGCCTCCAGAGCAACCCATGAAGTAAAGCATGAACCGTTGGAATCTCTGCACCACCCCTGCCCCCGCCCCCGCCTGAGTAAAGAAAAG Coding sequence (CDS) ATGTATAGCAGAAATCGAAATTTCATACTGATAATCGAGGCCAGAAATATGCTCCTCACACGGAAAGATTCCTCGCCAGAATCCCTTCAAACGAAATCCCAGGTCCAAACGCCAGAATCAATCCCCATTCCTCAATTTCCCCACCACCCATCTTCGTCTTCAAGCTCTCATCCACCATGTATTCCAACACATACACGATTGTGTTACTGCTCGCATTTCCATAGTCCATCAGAGCTTGCCGGCTCGCCTTCAGCTTCTCAGCTCAAAGAGTGGCCGTTCAATGGGCCAAAACAGGGTCCGCGCCAATTAGCATTGCCCCAGCACCATCCCCAAATAGCGCCACGCCTACCAGATCGTATGGACGACGGGCACTTGATGGCTTGTAGCTGTAAAGAAATCGATTTACCCAATAATGGTGGTTTCAGAGGTGACAAGCAGAACTCGGCTTCCGGGGTTGTTTTCAGCCAAGTCTTTGACGACTCTAAGGCCTGCCACGCCTCCAGAGCAACCCATGAAGTAAAGCATGAACCGTTGGAATCTCTGCACCACCCCTGCCCCCGCCCCCGCCTGAGTAAAGAAAAG Protein sequence MYSRNRNFILIIEARNMLLTRKDSSPESLQTKSQVQTPESIPIPQFPHHPSSSSSSHPPCIPTHTRLCYCSHFHSPSELAGSPSASQLKEWPFNGPKQGPRQLALPQHHPQIAPRLPDRMDDGHLMACSCKEIDLPNNGGFRGDKQNSASGVVFSQVFDDSKACHASRATHEVKHEPLESLHHPCPRPRLSKEK
Homology
BLAST of CmaCh11G013980 vs. NCBI nr
Match: KAG7011747.1 (hypothetical protein SDJN02_26653, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 111.3 bits (277), Expect = 9.4e-21 Identity = 57/72 (79.17%), Postives = 61/72 (84.72%), Query Frame = 0
Query: 18 LLTRKDSSPESLQTKSQVQTPESIPIPQFPHHPSSSSSSHPPCIPTHTRLCYCSHFHSPS 77
++ R+DSS ESLQTKSQVQ PESIPIPQFPHH SSSSS PPCI T+ CYCSHFHSPS
Sbjct: 1 MVPRQDSSSESLQTKSQVQMPESIPIPQFPHHSSSSSSFLPPCILVRTQSCYCSHFHSPS 60
Query: 78 ELAGSPSASQLK 90
ELAGSPSASQ K
Sbjct: 61 ELAGSPSASQPK 72
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAG7011747.1 | 9.4e-21 | 79.17 | hypothetical protein SDJN02_26653, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 81..104 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 22..58 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 165..194 |
Relationships
The following mRNA feature(s) are a part of this gene:
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