Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGGAGTTCACTTAATTAGTTTATGGCGTCTACTCAGCTCAGCTTGGAATGTAAAGTTCAAAGCTATTCCATGCTGCTTCAATATTCTTTTGGAGATCAACACCAAGTGCCGCCTAATTCCGATGACTTCTATTATAAGCTTCAGGAATTCGTTTCTCGCCTTGAACAAGAGCGCCTTAAAATTGATGTCTTCAAACGGGAGCTTCCCCTTTGTATGCAGCTTTTGACCAACGGTACTATCTAAATTTAAATTTAAATCTTCCACTTTCTTTGTGTTTGTAGTTTGCTAAATTTGGTATGTTTGTAGCCGTGGAGACGTCCAGGAGACAGCTGCAGGCCTGCAAGGCAAGTGAGGCGCCGCCATCCAAGCCGGTTTTGGAAGAATTCATGCCGCTCAAAAACTCCACAACGCCGGATGATGAAAAGCCGCCCACAATATTGTCGGATAAGGCAAATTGGATGACGTCACTTCAGCTTTGGAGTCGAGCAAATAAGGAATATACTGATCCACCTCATTCCCATAATAATAATAATTCAGACACTCGTAAACAAAGAGTTAGTAATGGAGCTTTTGTTCCGTTCAATAAAGATCGGAGCTTGGGGCCGGGTTTGGGTGTTGGCGGAGGCGGCGTGAAAGGGGTGGCGGTGGAAATGGAGTTACTGGAGAAAGGTGAGAAGAAGGAGAAGAAGAATCATTGTGGTGATACTAATAATAACGTTGATGGTGGGATATTAACGGCGACGGAGGACAGGGCTGAACGTGGAACAGGGGAGGTGGGATTGGCTCCCACGACAAGTTCAACTACGACTCAGACACACCGGAAGGCAAGACGATGCTGGTCGCCGGACTTGCACCGGAGATTTGTCAATGCTCTTCGGATGCTTGGTGGCTCTCAAGGTATATAATTCATTATTGATTAATTTTTTTTTTTTTAGAATACCAAAATAAATTCATGAGAGTAGAAAATATTGTAAATACCGTGATTTGTAACACAAATTATTAATTTGTTATAGTTTTTATTAAATTTAAAACAGTTGCGACACCAAAGCAGATCAGAGAGTTGATGAAAGTAGACGGTTTGACGAACGATGAAGTAAAAAGCCATCTCCAGGTCAGCTTTTATCCCCGCAAATTTGTATTACCCATCTTTAATTTGCGTTAATTTTGTCGTATACTCTCAGAAATACCGGCTTCACACAGTGAGACGCCCCGGTTTGGCCACACAAGCATCTGGGTCGCCAGCGGCTCACCTCGTAGTACTCGGTCTAGGCGGGCTATGGGTCCCACCAGAGTATGCGAGGTCACCCACCCTGTACGGCCCACCCGCCACGTCCCATCCGCCTTCCCACTTCTACACCCCGGCTTCAGTGCCGCACGAATATTATACGAGAACGATAGCGCCGCCGCATCTGCAGCAACATCATCATCAGGTGCATTTATACAAGGGGGAGTCCACGAAGGCGGCCCAAAGCTCGCCGGCTTCGGAGGTGAGGGACACGGCGGAGCGGTCGGAGATCTTGGAGGAGGAGAAATCGGAGGGCGGTCAAAATGGCGAGGACAGAAGAATTAAAGGGAGAGGATCGTGGGGGCGGAGATTGGAGGGTGAAGAAAGTAATAGAAGTGAAGTTAGTCTGAAATTCTGAAGAGTTAATTAATATAATAATAGCGTAATTTCTAGAACTTGATATGATTTAATATGAACAAATCAAATAATAATACACAAACCTCGTACCCATCTCATTATTTCCAACTATTTTGGATCTAGGATGAAGCCCATATTTTTATAGAGGGCCCATACCATTAAAAAG
mRNA sequence
GAGGAGTTCACTTAATTAGTTTATGGCGTCTACTCAGCTCAGCTTGGAATGTAAAGTTCAAAGCTATTCCATGCTGCTTCAATATTCTTTTGGAGATCAACACCAAGTGCCGCCTAATTCCGATGACTTCTATTATAAGCTTCAGGAATTCGTTTCTCGCCTTGAACAAGAGCGCCTTAAAATTGATGTCTTCAAACGGGAGCTTCCCCTTTGTATGCAGCTTTTGACCAACGCCGTGGAGACGTCCAGGAGACAGCTGCAGGCCTGCAAGGCAAGTGAGGCGCCGCCATCCAAGCCGGTTTTGGAAGAATTCATGCCGCTCAAAAACTCCACAACGCCGGATGATGAAAAGCCGCCCACAATATTGTCGGATAAGGCAAATTGGATGACGTCACTTCAGCTTTGGAGTCGAGCAAATAAGGAATATACTGATCCACCTCATTCCCATAATAATAATAATTCAGACACTCGTAAACAAAGAGTTAGTAATGGAGCTTTTGTTCCGTTCAATAAAGATCGGAGCTTGGGGCCGGGTTTGGGTGTTGGCGGAGGCGGCGTGAAAGGGGTGGCGGTGGAAATGGAGTTACTGGAGAAAGGTGAGAAGAAGGAGAAGAAGAATCATTGTGGTGATACTAATAATAACGTTGATGGTGGGATATTAACGGCGACGGAGGACAGGGCTGAACGTGGAACAGGGGAGGTGGGATTGGCTCCCACGACAAGTTCAACTACGACTCAGACACACCGGAAGGCAAGACGATGCTGGTCGCCGGACTTGCACCGGAGATTTGTCAATGCTCTTCGGATGCTTGGTGGCTCTCAAGTTGCGACACCAAAGCAGATCAGAGAGTTGATGAAAGTAGACGGTTTGACGAACGATGAAGTAAAAAGCCATCTCCAGAAATACCGGCTTCACACAGTGAGACGCCCCGGTTTGGCCACACAAGCATCTGGGTCGCCAGCGGCTCACCTCGTAGTACTCGGTCTAGGCGGGCTATGGGTCCCACCAGAGTATGCGAGGTCACCCACCCTGTACGGCCCACCCGCCACGTCCCATCCGCCTTCCCACTTCTACACCCCGGCTTCAGTGCCGCACGAATATTATACGAGAACGATAGCGCCGCCGCATCTGCAGCAACATCATCATCAGGTGCATTTATACAAGGGGGAGTCCACGAAGGCGGCCCAAAGCTCGCCGGCTTCGGAGGTGAGGGACACGGCGGAGCGGTCGGAGATCTTGGAGGAGGAGAAATCGGAGGGCGGTCAAAATGGCGAGGACAGAAGAATTAAAGGGAGAGGATCGTGGGGGCGGAGATTGGAGGGTGAAGAAAGTAATAGAAGTGAAGTTAGTCTGAAATTCTGAAGAGTTAATTAATATAATAATAGCGTAATTTCTAGAACTTGATATGATTTAATATGAACAAATCAAATAATAATACACAAACCTCGTACCCATCTCATTATTTCCAACTATTTTGGATCTAGGATGAAGCCCATATTTTTATAGAGGGCCCATACCATTAAAAAG
Coding sequence (CDS)
ATGGCGTCTACTCAGCTCAGCTTGGAATGTAAAGTTCAAAGCTATTCCATGCTGCTTCAATATTCTTTTGGAGATCAACACCAAGTGCCGCCTAATTCCGATGACTTCTATTATAAGCTTCAGGAATTCGTTTCTCGCCTTGAACAAGAGCGCCTTAAAATTGATGTCTTCAAACGGGAGCTTCCCCTTTGTATGCAGCTTTTGACCAACGCCGTGGAGACGTCCAGGAGACAGCTGCAGGCCTGCAAGGCAAGTGAGGCGCCGCCATCCAAGCCGGTTTTGGAAGAATTCATGCCGCTCAAAAACTCCACAACGCCGGATGATGAAAAGCCGCCCACAATATTGTCGGATAAGGCAAATTGGATGACGTCACTTCAGCTTTGGAGTCGAGCAAATAAGGAATATACTGATCCACCTCATTCCCATAATAATAATAATTCAGACACTCGTAAACAAAGAGTTAGTAATGGAGCTTTTGTTCCGTTCAATAAAGATCGGAGCTTGGGGCCGGGTTTGGGTGTTGGCGGAGGCGGCGTGAAAGGGGTGGCGGTGGAAATGGAGTTACTGGAGAAAGGTGAGAAGAAGGAGAAGAAGAATCATTGTGGTGATACTAATAATAACGTTGATGGTGGGATATTAACGGCGACGGAGGACAGGGCTGAACGTGGAACAGGGGAGGTGGGATTGGCTCCCACGACAAGTTCAACTACGACTCAGACACACCGGAAGGCAAGACGATGCTGGTCGCCGGACTTGCACCGGAGATTTGTCAATGCTCTTCGGATGCTTGGTGGCTCTCAAGTTGCGACACCAAAGCAGATCAGAGAGTTGATGAAAGTAGACGGTTTGACGAACGATGAAGTAAAAAGCCATCTCCAGAAATACCGGCTTCACACAGTGAGACGCCCCGGTTTGGCCACACAAGCATCTGGGTCGCCAGCGGCTCACCTCGTAGTACTCGGTCTAGGCGGGCTATGGGTCCCACCAGAGTATGCGAGGTCACCCACCCTGTACGGCCCACCCGCCACGTCCCATCCGCCTTCCCACTTCTACACCCCGGCTTCAGTGCCGCACGAATATTATACGAGAACGATAGCGCCGCCGCATCTGCAGCAACATCATCATCAGGTGCATTTATACAAGGGGGAGTCCACGAAGGCGGCCCAAAGCTCGCCGGCTTCGGAGGTGAGGGACACGGCGGAGCGGTCGGAGATCTTGGAGGAGGAGAAATCGGAGGGCGGTCAAAATGGCGAGGACAGAAGAATTAAAGGGAGAGGATCGTGGGGGCGGAGATTGGAGGGTGAAGAAAGTAATAGAAGTGAAGTTAGTCTGAAATTCTGA
Protein sequence
MASTQLSLECKVQSYSMLLQYSFGDQHQVPPNSDDFYYKLQEFVSRLEQERLKIDVFKRELPLCMQLLTNAVETSRRQLQACKASEAPPSKPVLEEFMPLKNSTTPDDEKPPTILSDKANWMTSLQLWSRANKEYTDPPHSHNNNNSDTRKQRVSNGAFVPFNKDRSLGPGLGVGGGGVKGVAVEMELLEKGEKKEKKNHCGDTNNNVDGGILTATEDRAERGTGEVGLAPTTSSTTTQTHRKARRCWSPDLHRRFVNALRMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTVRRPGLATQASGSPAAHLVVLGLGGLWVPPEYARSPTLYGPPATSHPPSHFYTPASVPHEYYTRTIAPPHLQQHHHQVHLYKGESTKAAQSSPASEVRDTAERSEILEEEKSEGGQNGEDRRIKGRGSWGRRLEGEESNRSEVSLKF
Homology
BLAST of CmaCh11G005820 vs. ExPASy Swiss-Prot
Match:
Q9ZQ85 (Myb family transcription factor EFM OS=Arabidopsis thaliana OX=3702 GN=EFM PE=1 SV=2)
HSP 1 Score: 283.1 bits (723), Expect = 5.4e-75
Identity = 217/477 (45.49%), Postives = 277/477 (58.07%), Query Frame = 0
Query: 2 ASTQLSLECKVQSYSMLLQYSFGDQHQVPPNSDDFYYKLQEFVSRLEQERLKIDVFKREL 61
+S++LSL+CK QSYSMLL+ SFGD Q SD +KL++ +SRLEQERLKID FKREL
Sbjct: 3 SSSELSLDCKPQSYSMLLK-SFGDNFQ----SDPTTHKLEDLLSRLEQERLKIDAFKREL 62
Query: 62 PLCMQLLTNAVETSRRQLQACKA-----SEAPPSKPVLEEFMPLKNSTTPDDEKPPTILS 121
PLCMQLL NAVE ++QL+A +A +++ ++PVLEEF+PL+N +P +
Sbjct: 63 PLCMQLLNNAVEVYKQQLEAYRANSNNNNQSVGTRPVLEEFIPLRN-------QPEKTNN 122
Query: 122 DKANWMTSLQLWSRANKE------YTDPPHSHNNNNSDTR------KQRVSNGAFVPFNK 181
+NWMT+ QLWS++ + TD + NS + KQR +GAF+PF+K
Sbjct: 123 KGSNWMTTAQLWSQSETKPKNIDSTTDQSLPKDEINSSPKLGHFDAKQRNGSGAFLPFSK 182
Query: 182 DRSLGPGLGVGGGGVKGVAVEMELL--EKGEKKEKKNHCGDTNNNVDGGILTATEDRAER 241
++SL P L + VK V+ E + G + N+ + NNN +
Sbjct: 183 EQSL-PELAL-STEVKRVSPTNEHTNGQDGNDESMINNDNNYNNN---------NNNNSN 242
Query: 242 GTGEVGLAPTTSSTTTQTHRKARRCWSPDLHRRFVNALRMLGGSQVATPKQIRELMKVDG 301
G SSTT+Q++RKARRCWSPDLHRRFV AL+MLGGSQVATPKQIRELMKVDG
Sbjct: 243 SNG-------VSSTTSQSNRKARRCWSPDLHRRFVQALQMLGGSQVATPKQIRELMKVDG 302
Query: 302 LTNDEVKSHLQKYRLHTVRRPGLATQASGSPAAHLVVLGLGGLWVPPEYAR----SPTLY 361
LTNDEVKSHLQKYRLHT RRP + Q SG P HLVV LGG+WVPPEY +PTLY
Sbjct: 303 LTNDEVKSHLQKYRLHT-RRPSPSPQTSGGPGPHLVV--LGGIWVPPEYTSAHGGTPTLY 362
Query: 362 GPPATSH-------PPSHFYTPASVPHEYYTRTIAPPHLQQHHHQVHLYKGES-TKAAQS 421
H PP HF + E+Y T PP HHH + G S A+
Sbjct: 363 HHQVHHHHTNTAGPPPPHFCS----SQEFY--TTPPPPQPLHHHHFQTFNGSSGGTASTD 422
Query: 422 SPASEVRDTAERSEILEEEKSEGGQNGEDRRIKGRGSWGRRLEGEES-NRSEVSLKF 447
S +V D S +E + E G G +R KG + E + N SE++LKF
Sbjct: 423 STHHQVTD----SPTVEGKSPESG--GGER--KGLAALREECEDHSNINGSEITLKF 432
BLAST of CmaCh11G005820 vs. ExPASy Swiss-Prot
Match:
Q5VRW2 (Transcription factor NIGTH1 OS=Oryza sativa subsp. japonica OX=39947 GN=NHO1 PE=1 SV=2)
HSP 1 Score: 227.3 bits (578), Expect = 3.5e-58
Identity = 169/389 (43.44%), Postives = 214/389 (55.01%), Query Frame = 0
Query: 39 KLQEFVSRLEQERLKIDVFKRELPLCMQLLTNAVETSRRQLQA--------CKASEAPPS 98
KLQEF+SRLE+ERLKID FKRELPLCMQLL +A+E R+QL+A A+ A +
Sbjct: 29 KLQEFLSRLEEERLKIDAFKRELPLCMQLLNHAMEAYRQQLEAYQMGSQHSAAAAAAARA 88
Query: 99 KPVLEEFMPLKN---STTPDDEKPP----TILSDKANWMTSLQLW------SRANKEYTD 158
VLEEF+P+KN D+ ++ S+KA+WM S QLW S A+
Sbjct: 89 PLVLEEFIPVKNIGIDVVAADKAAAAGGNSVSSEKASWMVSAQLWNAPASASAADTAAKG 148
Query: 159 P--PHSHNNNNS-DTRKQRVS--------NGAFVPFNKDRSLGPGLGVGGGGVKGVAV-- 218
P P H+ ++ DT + ++ GAF+PF+KD ++G G + +A+
Sbjct: 149 PQTPKEHSEHHPLDTSPKLITALDGGGGGGGAFLPFSKDNAMGDGSAAAAAALPELALAP 208
Query: 219 -----EMELLEKGEKKEKKNHCGDTNNNVDGGILTATEDRAERGTGEVGLAPTTSS---- 278
+ + GE +KK + D + A A+ G G P+T S
Sbjct: 209 AEKAADAITIAAGE-VDKKPYAHDNG-------VVARSREAQNG----GKPPSTPSDGQA 268
Query: 279 --TTTQTHRKARRCWSPDLHRRFVNALRMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQ 338
Q HRKARRCWSP+LHRRFVNAL++LGG+QVATPKQIRELMKVDGLTNDEVKSHLQ
Sbjct: 269 VPPPPQPHRKARRCWSPELHRRFVNALQILGGAQVATPKQIRELMKVDGLTNDEVKSHLQ 328
Query: 339 KYRLHTVRRPGLATQASGSPAAHLVVLGLGGLWVPPEY---ARSPTLYGPPATSHPPSHF 380
KYRLHT RRP + + LVV LGG+WVPPEY A P +YG + P
Sbjct: 329 KYRLHT-RRPMPSPAPPTAATPQLVV--LGGIWVPPEYATQAAGPAIYGAHPATQP---H 388
BLAST of CmaCh11G005820 vs. ExPASy Swiss-Prot
Match:
Q8VZS3 (Transcription factor HHO2 OS=Arabidopsis thaliana OX=3702 GN=HHO2 PE=1 SV=1)
HSP 1 Score: 171.8 bits (434), Expect = 1.8e-41
Identity = 127/346 (36.71%), Postives = 180/346 (52.02%), Query Frame = 0
Query: 39 KLQEFVSRLEQERLKIDVFKRELPLCMQLLTNAVETSRRQL---------QACKASEAPP 98
K E+V LE+E+ KI VF+RELPLC++L+T A+E R++L Q + + +
Sbjct: 13 KCHEYVEALEEEQKKIQVFQRELPLCLELVTQAIEACRKELSGTTTTTSEQCSEQTTSVC 72
Query: 99 SKPVLEEFMPLKNSTTPDDE-------------KPPTILSDKANWMTSLQLWSRANKEYT 158
PV EEF+P+K ++ +E P + + K++W+ S+QLW+ +
Sbjct: 73 GGPVFEEFIPIKKISSLCEEVQEEEEEDGEHESSPELVNNKKSDWLRSVQLWNHSPD--L 132
Query: 159 DPPHSHNNNNSDTRKQRVSNGAFVPFNK---DRSLGPGLGVGGGGVKGVAVEMELLEKGE 218
+P + + + +GAF PF K + L P + VA M
Sbjct: 133 NPKEERVAKKAKVVEVKPKSGAFQPFQKRVLETDLQPAV--------KVASSMPATTTSS 192
Query: 219 KKEKKNHCGDTNNNVDGGILTATEDRAERGTGEVGLAPTTSSTTTQTHRKARRCWSPDLH 278
E CG ++ + G E R E+ + + THRK RRCWSP+LH
Sbjct: 193 TTET---CGGKSDLIKAG---DEERRIEQ-----------QQSQSHTHRKQRRCWSPELH 252
Query: 279 RRFVNALRMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTVRRP---GLATQAS 338
RRF+NAL+ LGGS VATPKQIR+ MKVDGLTNDEVKSHLQKYRLHT RRP +A Q++
Sbjct: 253 RRFLNALQQLGGSHVATPKQIRDHMKVDGLTNDEVKSHLQKYRLHT-RRPAATSVAAQST 312
Query: 339 GSPAAHLVVLGLGGLWVPPEYARSPTLYGPPATSHPPSHFYTPASV 357
G+ V+ +GG+WVP S + PP+ Y P +V
Sbjct: 313 GNQQQPQFVV-VGGIWVP-----SSQDFPPPSDVANKGGVYAPVAV 324
BLAST of CmaCh11G005820 vs. ExPASy Swiss-Prot
Match:
Q9FPE8 (Transcription factor HHO3 OS=Arabidopsis thaliana OX=3702 GN=HHO3 PE=1 SV=1)
HSP 1 Score: 171.0 bits (432), Expect = 3.0e-41
Identity = 122/336 (36.31%), Postives = 169/336 (50.30%), Query Frame = 0
Query: 39 KLQEFVSRLEQERLKIDVFKRELPLCMQLLTNAVETSRRQLQ--------ACKASEAPPS 98
+ E+V LE+E+ KI VF+RELPLC++L+T A+E+ R++L + SE S
Sbjct: 17 RCHEYVEALEEEQKKIQVFQRELPLCLELVTQAIESCRKELSESSEHVGGQSECSERTTS 76
Query: 99 K---PVLEEFMPLK------NSTTPDDEKPPTIL---------SDKANWMTSLQLWSRAN 158
+ V EEFMP+K + T D+E T + K++W+ S+QLW+++
Sbjct: 77 ECGGAVFEEFMPIKWSSASSDETDKDEEAEKTEMMTNENNDGDKKKSDWLRSVQLWNQS- 136
Query: 159 KEYTDPPHSHNNNNSDTRKQRVSNGAFVPFNKDRSLGPGLGVGGGGVKGVAVEMELLEKG 218
P NN + + S GAF PF K+ K A + + L K
Sbjct: 137 -----PDPQPNNKKPMVIEVKRSAGAFQPFQKE--------------KPKAADSQPLIKA 196
Query: 219 EKKEKKNHCGDTNNNVDGGILTATEDRAERGTGEVGLAPTTSSTTTQTHRKARRCWSPDL 278
T V GG E++ + + ++RK RRCWSP+L
Sbjct: 197 ITPTSTTTTSSTAETVGGG--KEFEEQKQ----------------SHSNRKQRRCWSPEL 256
Query: 279 HRRFVNALRMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTVRRPGLATQASGS 338
HRRF++AL+ LGGS VATPKQIR+LMKVDGLTNDEVKSHLQKYRLHT R + G
Sbjct: 257 HRRFLHALQQLGGSHVATPKQIRDLMKVDGLTNDEVKSHLQKYRLHTRRPATPVVRTGGE 314
Query: 339 PAAHLVVLGLGGLWVPPEYARSPTLYGPPATSHPPS 349
+ + G+WVP + +Y P AT P S
Sbjct: 317 NPQQRQFMVMEGIWVPSHDTTNNRVYAPVATQPPQS 314
BLAST of CmaCh11G005820 vs. ExPASy Swiss-Prot
Match:
Q6Z869 (Transcription factor NIGT1 OS=Oryza sativa subsp. japonica OX=39947 GN=NIGT1 PE=2 SV=1)
HSP 1 Score: 166.0 bits (419), Expect = 9.7e-40
Identity = 142/410 (34.63%), Postives = 192/410 (46.83%), Query Frame = 0
Query: 39 KLQEFVSRLEQERLKIDVFKRELPLCMQLLTNAVETSRRQLQACKASE-----APPSKPV 98
+ +E++ LE+ER KI VF+RELPLC L+T +E R Q+ A + E PP PV
Sbjct: 14 RCREYLLALEEERRKIQVFQRELPLCFDLVTQTIEGMRSQMDAAGSEETVSDQGPP--PV 73
Query: 99 LEEFMPLK----------NSTTPDDEK-------------------PPTILSDKANWMTS 158
LEEF+PLK ST D K PP +W+ S
Sbjct: 74 LEEFIPLKPSLSLSSSEEESTHADAAKSGKKEEAETSERHSSPPPPPPEAKKVTPDWLQS 133
Query: 159 LQLWSRANKEYTDPPHSHNNNNSDTR----KQRVSNGAFVPFNKDRSLGPGLGVGGGGVK 218
+QLWS+ + P + + R + GAF PF K++ +
Sbjct: 134 VQLWSQEEPQQPSSPSPTPTKDLPCKPVALNARKAGGAFQPFEKEKR----AELPASSTT 193
Query: 219 GVAVEMELLEKGEK----KEKKNHCGDTNNNVDGGILTATEDRAERGTGEVGLAPTTSST 278
A + + G+K +K+ D +N+ D +D+ + G
Sbjct: 194 AAASSTVVGDSGDKPTDDDTEKHMETDKDNDKD------AKDKDKEG------------- 253
Query: 279 TTQTHRKARRCWSPDLHRRFVNALRMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYR 338
+Q HRK RRCW+P+LHRRF+ AL+ LGGS VATPKQIRELMKVDGLTNDEVKSHLQKYR
Sbjct: 254 QSQPHRKPRRCWAPELHRRFLQALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYR 313
Query: 339 LHTVRRPGLATQASGS------PAAHLVVLGLGGLWV-PPEYARSPTLYGP---PATSHP 396
LHT RRP Q+S + PA VV +G +WV PPEYA + A +
Sbjct: 314 LHT-RRPSSTGQSSAAAGVPAPPAPQFVV--VGSIWVPPPEYAAAAAAQQHVQLAAAGNN 373
BLAST of CmaCh11G005820 vs. TAIR 10
Match:
AT2G03500.1 (Homeodomain-like superfamily protein )
HSP 1 Score: 283.1 bits (723), Expect = 3.9e-76
Identity = 217/477 (45.49%), Postives = 277/477 (58.07%), Query Frame = 0
Query: 2 ASTQLSLECKVQSYSMLLQYSFGDQHQVPPNSDDFYYKLQEFVSRLEQERLKIDVFKREL 61
+S++LSL+CK QSYSMLL+ SFGD Q SD +KL++ +SRLEQERLKID FKREL
Sbjct: 3 SSSELSLDCKPQSYSMLLK-SFGDNFQ----SDPTTHKLEDLLSRLEQERLKIDAFKREL 62
Query: 62 PLCMQLLTNAVETSRRQLQACKA-----SEAPPSKPVLEEFMPLKNSTTPDDEKPPTILS 121
PLCMQLL NAVE ++QL+A +A +++ ++PVLEEF+PL+N +P +
Sbjct: 63 PLCMQLLNNAVEVYKQQLEAYRANSNNNNQSVGTRPVLEEFIPLRN-------QPEKTNN 122
Query: 122 DKANWMTSLQLWSRANKE------YTDPPHSHNNNNSDTR------KQRVSNGAFVPFNK 181
+NWMT+ QLWS++ + TD + NS + KQR +GAF+PF+K
Sbjct: 123 KGSNWMTTAQLWSQSETKPKNIDSTTDQSLPKDEINSSPKLGHFDAKQRNGSGAFLPFSK 182
Query: 182 DRSLGPGLGVGGGGVKGVAVEMELL--EKGEKKEKKNHCGDTNNNVDGGILTATEDRAER 241
++SL P L + VK V+ E + G + N+ + NNN +
Sbjct: 183 EQSL-PELAL-STEVKRVSPTNEHTNGQDGNDESMINNDNNYNNN---------NNNNSN 242
Query: 242 GTGEVGLAPTTSSTTTQTHRKARRCWSPDLHRRFVNALRMLGGSQVATPKQIRELMKVDG 301
G SSTT+Q++RKARRCWSPDLHRRFV AL+MLGGSQVATPKQIRELMKVDG
Sbjct: 243 SNG-------VSSTTSQSNRKARRCWSPDLHRRFVQALQMLGGSQVATPKQIRELMKVDG 302
Query: 302 LTNDEVKSHLQKYRLHTVRRPGLATQASGSPAAHLVVLGLGGLWVPPEYAR----SPTLY 361
LTNDEVKSHLQKYRLHT RRP + Q SG P HLVV LGG+WVPPEY +PTLY
Sbjct: 303 LTNDEVKSHLQKYRLHT-RRPSPSPQTSGGPGPHLVV--LGGIWVPPEYTSAHGGTPTLY 362
Query: 362 GPPATSH-------PPSHFYTPASVPHEYYTRTIAPPHLQQHHHQVHLYKGES-TKAAQS 421
H PP HF + E+Y T PP HHH + G S A+
Sbjct: 363 HHQVHHHHTNTAGPPPPHFCS----SQEFY--TTPPPPQPLHHHHFQTFNGSSGGTASTD 422
Query: 422 SPASEVRDTAERSEILEEEKSEGGQNGEDRRIKGRGSWGRRLEGEES-NRSEVSLKF 447
S +V D S +E + E G G +R KG + E + N SE++LKF
Sbjct: 423 STHHQVTD----SPTVEGKSPESG--GGER--KGLAALREECEDHSNINGSEITLKF 432
BLAST of CmaCh11G005820 vs. TAIR 10
Match:
AT1G68670.1 (myb-like transcription factor family protein )
HSP 1 Score: 171.8 bits (434), Expect = 1.3e-42
Identity = 127/346 (36.71%), Postives = 180/346 (52.02%), Query Frame = 0
Query: 39 KLQEFVSRLEQERLKIDVFKRELPLCMQLLTNAVETSRRQL---------QACKASEAPP 98
K E+V LE+E+ KI VF+RELPLC++L+T A+E R++L Q + + +
Sbjct: 13 KCHEYVEALEEEQKKIQVFQRELPLCLELVTQAIEACRKELSGTTTTTSEQCSEQTTSVC 72
Query: 99 SKPVLEEFMPLKNSTTPDDE-------------KPPTILSDKANWMTSLQLWSRANKEYT 158
PV EEF+P+K ++ +E P + + K++W+ S+QLW+ +
Sbjct: 73 GGPVFEEFIPIKKISSLCEEVQEEEEEDGEHESSPELVNNKKSDWLRSVQLWNHSPD--L 132
Query: 159 DPPHSHNNNNSDTRKQRVSNGAFVPFNK---DRSLGPGLGVGGGGVKGVAVEMELLEKGE 218
+P + + + +GAF PF K + L P + VA M
Sbjct: 133 NPKEERVAKKAKVVEVKPKSGAFQPFQKRVLETDLQPAV--------KVASSMPATTTSS 192
Query: 219 KKEKKNHCGDTNNNVDGGILTATEDRAERGTGEVGLAPTTSSTTTQTHRKARRCWSPDLH 278
E CG ++ + G E R E+ + + THRK RRCWSP+LH
Sbjct: 193 TTET---CGGKSDLIKAG---DEERRIEQ-----------QQSQSHTHRKQRRCWSPELH 252
Query: 279 RRFVNALRMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTVRRP---GLATQAS 338
RRF+NAL+ LGGS VATPKQIR+ MKVDGLTNDEVKSHLQKYRLHT RRP +A Q++
Sbjct: 253 RRFLNALQQLGGSHVATPKQIRDHMKVDGLTNDEVKSHLQKYRLHT-RRPAATSVAAQST 312
Query: 339 GSPAAHLVVLGLGGLWVPPEYARSPTLYGPPATSHPPSHFYTPASV 357
G+ V+ +GG+WVP S + PP+ Y P +V
Sbjct: 313 GNQQQPQFVV-VGGIWVP-----SSQDFPPPSDVANKGGVYAPVAV 324
BLAST of CmaCh11G005820 vs. TAIR 10
Match:
AT1G25550.1 (myb-like transcription factor family protein )
HSP 1 Score: 171.0 bits (432), Expect = 2.1e-42
Identity = 122/336 (36.31%), Postives = 169/336 (50.30%), Query Frame = 0
Query: 39 KLQEFVSRLEQERLKIDVFKRELPLCMQLLTNAVETSRRQLQ--------ACKASEAPPS 98
+ E+V LE+E+ KI VF+RELPLC++L+T A+E+ R++L + SE S
Sbjct: 17 RCHEYVEALEEEQKKIQVFQRELPLCLELVTQAIESCRKELSESSEHVGGQSECSERTTS 76
Query: 99 K---PVLEEFMPLK------NSTTPDDEKPPTIL---------SDKANWMTSLQLWSRAN 158
+ V EEFMP+K + T D+E T + K++W+ S+QLW+++
Sbjct: 77 ECGGAVFEEFMPIKWSSASSDETDKDEEAEKTEMMTNENNDGDKKKSDWLRSVQLWNQS- 136
Query: 159 KEYTDPPHSHNNNNSDTRKQRVSNGAFVPFNKDRSLGPGLGVGGGGVKGVAVEMELLEKG 218
P NN + + S GAF PF K+ K A + + L K
Sbjct: 137 -----PDPQPNNKKPMVIEVKRSAGAFQPFQKE--------------KPKAADSQPLIKA 196
Query: 219 EKKEKKNHCGDTNNNVDGGILTATEDRAERGTGEVGLAPTTSSTTTQTHRKARRCWSPDL 278
T V GG E++ + + ++RK RRCWSP+L
Sbjct: 197 ITPTSTTTTSSTAETVGGG--KEFEEQKQ----------------SHSNRKQRRCWSPEL 256
Query: 279 HRRFVNALRMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTVRRPGLATQASGS 338
HRRF++AL+ LGGS VATPKQIR+LMKVDGLTNDEVKSHLQKYRLHT R + G
Sbjct: 257 HRRFLHALQQLGGSHVATPKQIRDLMKVDGLTNDEVKSHLQKYRLHTRRPATPVVRTGGE 314
Query: 339 PAAHLVVLGLGGLWVPPEYARSPTLYGPPATSHPPS 349
+ + G+WVP + +Y P AT P S
Sbjct: 317 NPQQRQFMVMEGIWVPSHDTTNNRVYAPVATQPPQS 314
BLAST of CmaCh11G005820 vs. TAIR 10
Match:
AT3G25790.1 (myb-like transcription factor family protein )
HSP 1 Score: 154.1 bits (388), Expect = 2.7e-37
Identity = 112/320 (35.00%), Postives = 163/320 (50.94%), Query Frame = 0
Query: 39 KLQEFVSRLEQERLKIDVFKRELPLCMQLLTNAVETSRRQLQA-----------CKASEA 98
K E++ LE+ER KI+VF+RELPLC++L+T A+E +R++ C
Sbjct: 17 KCCEYIEALEEERRKINVFQRELPLCVELVTQAIEAYKREISGTSTDNLYGQSECSEQTT 76
Query: 99 PPSKPVLEEFMPLKNSTT----------PDDEKPPTILSD--------KANWMTSLQLWS 158
+L+ F+P+K+S+T DDE+ + +D K+ W+ S+QLW+
Sbjct: 77 GECGRILDLFIPIKHSSTSIEEEVDDKDDDDEEHQSHETDIDFDDKNMKSEWLKSVQLWN 136
Query: 159 RANKEYTDPPHSHNNNNSDTRKQRVSNGAFVPFNKDRSLGPGLGVGGGGVKGVAVEMELL 218
+++ +NN D +++ +EL+
Sbjct: 137 QSDAVV-------SNNRQDRSQEKTE----------------------------TLVELI 196
Query: 219 EKGEKKEKKNHCGDTNNNVDGGILTATEDRAERGTGEVGLAPTTSSTTTQTHRKARRCWS 278
+ ++ KK NNN+ + T ++ G+G G + RK RRCWS
Sbjct: 197 KINDEAAKK------NNNIKSPVTT-----SDGGSGGGG--------GRRGQRKNRRCWS 256
Query: 279 PDLHRRFVNALRMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTVRRPGLATQA 329
+LHRRF+NAL+ LGG VATPKQIR++MKVDGLTNDEVKSHLQKYRLH RRP T
Sbjct: 257 QELHRRFLNALKQLGGPHVATPKQIRDIMKVDGLTNDEVKSHLQKYRLH-ARRPSQTTPN 279
BLAST of CmaCh11G005820 vs. TAIR 10
Match:
AT1G13300.1 (myb-like transcription factor family protein )
HSP 1 Score: 147.9 bits (372), Expect = 1.9e-35
Identity = 119/331 (35.95%), Postives = 159/331 (48.04%), Query Frame = 0
Query: 42 EFVSRLEQERLKIDVFKRELPLCMQLLTNAVETSRRQL-----------QACKASEAPPS 101
+++ LE+ER KI VF+RELPLC+ L+T A+E +R+L C
Sbjct: 19 QYIEALEEERRKIHVFQRELPLCLDLVTQAIEACKRELPEMTTENMYGQPECSEQTTGEC 78
Query: 102 KPVLEEFMPLKNSTTPDDEK------------PPTILSD---KANWMTSLQLWSRANKEY 161
PVLE+F+ +K+S+T ++E+ P D K++W+ S+QLW++ +
Sbjct: 79 GPVLEQFLTIKDSSTSNEEEDEEFDDEHGNHDPDNDSEDKNTKSDWLKSVQLWNQPD--- 138
Query: 162 TDPPHSHNNNNSDTRKQRVSNGAFVPFNKDRSLGPGLGVGGGGVKGVAVEMELLEKGEKK 221
H + R Q+ + +D S+ V GG +G K+
Sbjct: 139 ------HPLLPKEERLQQET------MTRDESMRKDPMVNGG-------------EGRKR 198
Query: 222 EKKNHCGDTNNNVDGGILTATEDRAERGTGEVGLAPTTSSTTTQTHRKARRCWSPDLHRR 281
E + DGG RK RRCWS LHRR
Sbjct: 199 EAEK---------DGG----------------------------GGRKQRRCWSSQLHRR 258
Query: 282 FVNALRMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTVRRPGLATQASG-SPA 341
F+NAL+ LGG VATPKQIRE MKVDGLTNDEVKSHLQKYRLHT RRP +G S
Sbjct: 259 FLNALQHLGGPHVATPKQIREFMKVDGLTNDEVKSHLQKYRLHT-RRPRQTVPNNGNSQT 281
Query: 342 AHLVVLGLGGLWVP-PEYARSPTLYGPPATS 345
H VV +GGLWVP +Y+ T G +S
Sbjct: 319 QHFVV--VGGLWVPQSDYSTGKTTGGATTSS 281
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Q9ZQ85 | 5.4e-75 | 45.49 | Myb family transcription factor EFM OS=Arabidopsis thaliana OX=3702 GN=EFM PE=1 ... | [more] |
| Q5VRW2 | 3.5e-58 | 43.44 | Transcription factor NIGTH1 OS=Oryza sativa subsp. japonica OX=39947 GN=NHO1 PE=... | [more] |
| Q8VZS3 | 1.8e-41 | 36.71 | Transcription factor HHO2 OS=Arabidopsis thaliana OX=3702 GN=HHO2 PE=1 SV=1 | [more] |
| Q9FPE8 | 3.0e-41 | 36.31 | Transcription factor HHO3 OS=Arabidopsis thaliana OX=3702 GN=HHO3 PE=1 SV=1 | [more] |
| Q6Z869 | 9.7e-40 | 34.63 | Transcription factor NIGT1 OS=Oryza sativa subsp. japonica OX=39947 GN=NIGT1 PE=... | [more] |
