CmaCh11G005820 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G005820
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	myb family transcription factor EFM-like
Location	Cma_Chr11: 2799892 .. 2801700 (-)
RNA-Seq Expression	CmaCh11G005820
Synteny	CmaCh11G005820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGGAGTTCACTTAATTAGTTTATGGCGTCTACTCAGCTCAGCTTGGAATGTAAAGTTCAAAGCTATTCCATGCTGCTTCAATATTCTTTTGGAGATCAACACCAAGTGCCGCCTAATTCCGATGACTTCTATTATAAGCTTCAGGAATTCGTTTCTCGCCTTGAACAAGAGCGCCTTAAAATTGATGTCTTCAAACGGGAGCTTCCCCTTTGTATGCAGCTTTTGACCAACGGTACTATCTAAATTTAAATTTAAATCTTCCACTTTCTTTGTGTTTGTAGTTTGCTAAATTTGGTATGTTTGTAGCCGTGGAGACGTCCAGGAGACAGCTGCAGGCCTGCAAGGCAAGTGAGGCGCCGCCATCCAAGCCGGTTTTGGAAGAATTCATGCCGCTCAAAAACTCCACAACGCCGGATGATGAAAAGCCGCCCACAATATTGTCGGATAAGGCAAATTGGATGACGTCACTTCAGCTTTGGAGTCGAGCAAATAAGGAATATACTGATCCACCTCATTCCCATAATAATAATAATTCAGACACTCGTAAACAAAGAGTTAGTAATGGAGCTTTTGTTCCGTTCAATAAAGATCGGAGCTTGGGGCCGGGTTTGGGTGTTGGCGGAGGCGGCGTGAAAGGGGTGGCGGTGGAAATGGAGTTACTGGAGAAAGGTGAGAAGAAGGAGAAGAAGAATCATTGTGGTGATACTAATAATAACGTTGATGGTGGGATATTAACGGCGACGGAGGACAGGGCTGAACGTGGAACAGGGGAGGTGGGATTGGCTCCCACGACAAGTTCAACTACGACTCAGACACACCGGAAGGCAAGACGATGCTGGTCGCCGGACTTGCACCGGAGATTTGTCAATGCTCTTCGGATGCTTGGTGGCTCTCAAGGTATATAATTCATTATTGATTAATTTTTTTTTTTTTAGAATACCAAAATAAATTCATGAGAGTAGAAAATATTGTAAATACCGTGATTTGTAACACAAATTATTAATTTGTTATAGTTTTTATTAAATTTAAAACAGTTGCGACACCAAAGCAGATCAGAGAGTTGATGAAAGTAGACGGTTTGACGAACGATGAAGTAAAAAGCCATCTCCAGGTCAGCTTTTATCCCCGCAAATTTGTATTACCCATCTTTAATTTGCGTTAATTTTGTCGTATACTCTCAGAAATACCGGCTTCACACAGTGAGACGCCCCGGTTTGGCCACACAAGCATCTGGGTCGCCAGCGGCTCACCTCGTAGTACTCGGTCTAGGCGGGCTATGGGTCCCACCAGAGTATGCGAGGTCACCCACCCTGTACGGCCCACCCGCCACGTCCCATCCGCCTTCCCACTTCTACACCCCGGCTTCAGTGCCGCACGAATATTATACGAGAACGATAGCGCCGCCGCATCTGCAGCAACATCATCATCAGGTGCATTTATACAAGGGGGAGTCCACGAAGGCGGCCCAAAGCTCGCCGGCTTCGGAGGTGAGGGACACGGCGGAGCGGTCGGAGATCTTGGAGGAGGAGAAATCGGAGGGCGGTCAAAATGGCGAGGACAGAAGAATTAAAGGGAGAGGATCGTGGGGGCGGAGATTGGAGGGTGAAGAAAGTAATAGAAGTGAAGTTAGTCTGAAATTCTGAAGAGTTAATTAATATAATAATAGCGTAATTTCTAGAACTTGATATGATTTAATATGAACAAATCAAATAATAATACACAAACCTCGTACCCATCTCATTATTTCCAACTATTTTGGATCTAGGATGAAGCCCATATTTTTATAGAGGGCCCATACCATTAAAAAG

mRNA sequence

GAGGAGTTCACTTAATTAGTTTATGGCGTCTACTCAGCTCAGCTTGGAATGTAAAGTTCAAAGCTATTCCATGCTGCTTCAATATTCTTTTGGAGATCAACACCAAGTGCCGCCTAATTCCGATGACTTCTATTATAAGCTTCAGGAATTCGTTTCTCGCCTTGAACAAGAGCGCCTTAAAATTGATGTCTTCAAACGGGAGCTTCCCCTTTGTATGCAGCTTTTGACCAACGCCGTGGAGACGTCCAGGAGACAGCTGCAGGCCTGCAAGGCAAGTGAGGCGCCGCCATCCAAGCCGGTTTTGGAAGAATTCATGCCGCTCAAAAACTCCACAACGCCGGATGATGAAAAGCCGCCCACAATATTGTCGGATAAGGCAAATTGGATGACGTCACTTCAGCTTTGGAGTCGAGCAAATAAGGAATATACTGATCCACCTCATTCCCATAATAATAATAATTCAGACACTCGTAAACAAAGAGTTAGTAATGGAGCTTTTGTTCCGTTCAATAAAGATCGGAGCTTGGGGCCGGGTTTGGGTGTTGGCGGAGGCGGCGTGAAAGGGGTGGCGGTGGAAATGGAGTTACTGGAGAAAGGTGAGAAGAAGGAGAAGAAGAATCATTGTGGTGATACTAATAATAACGTTGATGGTGGGATATTAACGGCGACGGAGGACAGGGCTGAACGTGGAACAGGGGAGGTGGGATTGGCTCCCACGACAAGTTCAACTACGACTCAGACACACCGGAAGGCAAGACGATGCTGGTCGCCGGACTTGCACCGGAGATTTGTCAATGCTCTTCGGATGCTTGGTGGCTCTCAAGTTGCGACACCAAAGCAGATCAGAGAGTTGATGAAAGTAGACGGTTTGACGAACGATGAAGTAAAAAGCCATCTCCAGAAATACCGGCTTCACACAGTGAGACGCCCCGGTTTGGCCACACAAGCATCTGGGTCGCCAGCGGCTCACCTCGTAGTACTCGGTCTAGGCGGGCTATGGGTCCCACCAGAGTATGCGAGGTCACCCACCCTGTACGGCCCACCCGCCACGTCCCATCCGCCTTCCCACTTCTACACCCCGGCTTCAGTGCCGCACGAATATTATACGAGAACGATAGCGCCGCCGCATCTGCAGCAACATCATCATCAGGTGCATTTATACAAGGGGGAGTCCACGAAGGCGGCCCAAAGCTCGCCGGCTTCGGAGGTGAGGGACACGGCGGAGCGGTCGGAGATCTTGGAGGAGGAGAAATCGGAGGGCGGTCAAAATGGCGAGGACAGAAGAATTAAAGGGAGAGGATCGTGGGGGCGGAGATTGGAGGGTGAAGAAAGTAATAGAAGTGAAGTTAGTCTGAAATTCTGAAGAGTTAATTAATATAATAATAGCGTAATTTCTAGAACTTGATATGATTTAATATGAACAAATCAAATAATAATACACAAACCTCGTACCCATCTCATTATTTCCAACTATTTTGGATCTAGGATGAAGCCCATATTTTTATAGAGGGCCCATACCATTAAAAAG

Coding sequence (CDS)

ATGGCGTCTACTCAGCTCAGCTTGGAATGTAAAGTTCAAAGCTATTCCATGCTGCTTCAATATTCTTTTGGAGATCAACACCAAGTGCCGCCTAATTCCGATGACTTCTATTATAAGCTTCAGGAATTCGTTTCTCGCCTTGAACAAGAGCGCCTTAAAATTGATGTCTTCAAACGGGAGCTTCCCCTTTGTATGCAGCTTTTGACCAACGCCGTGGAGACGTCCAGGAGACAGCTGCAGGCCTGCAAGGCAAGTGAGGCGCCGCCATCCAAGCCGGTTTTGGAAGAATTCATGCCGCTCAAAAACTCCACAACGCCGGATGATGAAAAGCCGCCCACAATATTGTCGGATAAGGCAAATTGGATGACGTCACTTCAGCTTTGGAGTCGAGCAAATAAGGAATATACTGATCCACCTCATTCCCATAATAATAATAATTCAGACACTCGTAAACAAAGAGTTAGTAATGGAGCTTTTGTTCCGTTCAATAAAGATCGGAGCTTGGGGCCGGGTTTGGGTGTTGGCGGAGGCGGCGTGAAAGGGGTGGCGGTGGAAATGGAGTTACTGGAGAAAGGTGAGAAGAAGGAGAAGAAGAATCATTGTGGTGATACTAATAATAACGTTGATGGTGGGATATTAACGGCGACGGAGGACAGGGCTGAACGTGGAACAGGGGAGGTGGGATTGGCTCCCACGACAAGTTCAACTACGACTCAGACACACCGGAAGGCAAGACGATGCTGGTCGCCGGACTTGCACCGGAGATTTGTCAATGCTCTTCGGATGCTTGGTGGCTCTCAAGTTGCGACACCAAAGCAGATCAGAGAGTTGATGAAAGTAGACGGTTTGACGAACGATGAAGTAAAAAGCCATCTCCAGAAATACCGGCTTCACACAGTGAGACGCCCCGGTTTGGCCACACAAGCATCTGGGTCGCCAGCGGCTCACCTCGTAGTACTCGGTCTAGGCGGGCTATGGGTCCCACCAGAGTATGCGAGGTCACCCACCCTGTACGGCCCACCCGCCACGTCCCATCCGCCTTCCCACTTCTACACCCCGGCTTCAGTGCCGCACGAATATTATACGAGAACGATAGCGCCGCCGCATCTGCAGCAACATCATCATCAGGTGCATTTATACAAGGGGGAGTCCACGAAGGCGGCCCAAAGCTCGCCGGCTTCGGAGGTGAGGGACACGGCGGAGCGGTCGGAGATCTTGGAGGAGGAGAAATCGGAGGGCGGTCAAAATGGCGAGGACAGAAGAATTAAAGGGAGAGGATCGTGGGGGCGGAGATTGGAGGGTGAAGAAAGTAATAGAAGTGAAGTTAGTCTGAAATTCTGA

Protein sequence

MASTQLSLECKVQSYSMLLQYSFGDQHQVPPNSDDFYYKLQEFVSRLEQERLKIDVFKRELPLCMQLLTNAVETSRRQLQACKASEAPPSKPVLEEFMPLKNSTTPDDEKPPTILSDKANWMTSLQLWSRANKEYTDPPHSHNNNNSDTRKQRVSNGAFVPFNKDRSLGPGLGVGGGGVKGVAVEMELLEKGEKKEKKNHCGDTNNNVDGGILTATEDRAERGTGEVGLAPTTSSTTTQTHRKARRCWSPDLHRRFVNALRMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTVRRPGLATQASGSPAAHLVVLGLGGLWVPPEYARSPTLYGPPATSHPPSHFYTPASVPHEYYTRTIAPPHLQQHHHQVHLYKGESTKAAQSSPASEVRDTAERSEILEEEKSEGGQNGEDRRIKGRGSWGRRLEGEESNRSEVSLKF

Homology

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BLAST of CmaCh11G005820 vs. ExPASy Swiss-Prot
Match: Q9ZQ85 (Myb family transcription factor EFM OS=Arabidopsis thaliana OX=3702 GN=EFM PE=1 SV=2)

HSP 1 Score: 283.1 bits (723), Expect = 5.4e-75
Identity = 217/477 (45.49%), Postives = 277/477 (58.07%), Query Frame = 0


Query: 2   ASTQLSLECKVQSYSMLLQYSFGDQHQVPPNSDDFYYKLQEFVSRLEQERLKIDVFKREL 61
           +S++LSL+CK QSYSMLL+ SFGD  Q    SD   +KL++ +SRLEQERLKID FKREL
Sbjct: 3   SSSELSLDCKPQSYSMLLK-SFGDNFQ----SDPTTHKLEDLLSRLEQERLKIDAFKREL 62

Query: 62  PLCMQLLTNAVETSRRQLQACKA-----SEAPPSKPVLEEFMPLKNSTTPDDEKPPTILS 121
           PLCMQLL NAVE  ++QL+A +A     +++  ++PVLEEF+PL+N       +P    +
Sbjct: 63  PLCMQLLNNAVEVYKQQLEAYRANSNNNNQSVGTRPVLEEFIPLRN-------QPEKTNN 122

Query: 122 DKANWMTSLQLWSRANKE------YTDPPHSHNNNNSDTR------KQRVSNGAFVPFNK 181
             +NWMT+ QLWS++  +       TD     +  NS  +      KQR  +GAF+PF+K
Sbjct: 123 KGSNWMTTAQLWSQSETKPKNIDSTTDQSLPKDEINSSPKLGHFDAKQRNGSGAFLPFSK 182

Query: 182 DRSLGPGLGVGGGGVKGVAVEMELL--EKGEKKEKKNHCGDTNNNVDGGILTATEDRAER 241
           ++SL P L +    VK V+   E    + G  +   N+  + NNN          +    
Sbjct: 183 EQSL-PELAL-STEVKRVSPTNEHTNGQDGNDESMINNDNNYNNN---------NNNNSN 242

Query: 242 GTGEVGLAPTTSSTTTQTHRKARRCWSPDLHRRFVNALRMLGGSQVATPKQIRELMKVDG 301
             G        SSTT+Q++RKARRCWSPDLHRRFV AL+MLGGSQVATPKQIRELMKVDG
Sbjct: 243 SNG-------VSSTTSQSNRKARRCWSPDLHRRFVQALQMLGGSQVATPKQIRELMKVDG 302

Query: 302 LTNDEVKSHLQKYRLHTVRRPGLATQASGSPAAHLVVLGLGGLWVPPEYAR----SPTLY 361
           LTNDEVKSHLQKYRLHT RRP  + Q SG P  HLVV  LGG+WVPPEY      +PTLY
Sbjct: 303 LTNDEVKSHLQKYRLHT-RRPSPSPQTSGGPGPHLVV--LGGIWVPPEYTSAHGGTPTLY 362

Query: 362 GPPATSH-------PPSHFYTPASVPHEYYTRTIAPPHLQQHHHQVHLYKGES-TKAAQS 421
                 H       PP HF +      E+Y  T  PP    HHH    + G S   A+  
Sbjct: 363 HHQVHHHHTNTAGPPPPHFCS----SQEFY--TTPPPPQPLHHHHFQTFNGSSGGTASTD 422

Query: 422 SPASEVRDTAERSEILEEEKSEGGQNGEDRRIKGRGSWGRRLEGEES-NRSEVSLKF 447
           S   +V D    S  +E +  E G  G +R  KG  +     E   + N SE++LKF
Sbjct: 423 STHHQVTD----SPTVEGKSPESG--GGER--KGLAALREECEDHSNINGSEITLKF 432

[Close]

BLAST of CmaCh11G005820 vs. ExPASy Swiss-Prot
Match: Q5VRW2 (Transcription factor NIGTH1 OS=Oryza sativa subsp. japonica OX=39947 GN=NHO1 PE=1 SV=2)

HSP 1 Score: 227.3 bits (578), Expect = 3.5e-58
Identity = 169/389 (43.44%), Postives = 214/389 (55.01%), Query Frame = 0


Query: 39  KLQEFVSRLEQERLKIDVFKRELPLCMQLLTNAVETSRRQLQA--------CKASEAPPS 98
           KLQEF+SRLE+ERLKID FKRELPLCMQLL +A+E  R+QL+A          A+ A  +
Sbjct: 29  KLQEFLSRLEEERLKIDAFKRELPLCMQLLNHAMEAYRQQLEAYQMGSQHSAAAAAAARA 88

Query: 99  KPVLEEFMPLKN---STTPDDEKPP----TILSDKANWMTSLQLW------SRANKEYTD 158
             VLEEF+P+KN        D+       ++ S+KA+WM S QLW      S A+     
Sbjct: 89  PLVLEEFIPVKNIGIDVVAADKAAAAGGNSVSSEKASWMVSAQLWNAPASASAADTAAKG 148

Query: 159 P--PHSHNNNNS-DTRKQRVS--------NGAFVPFNKDRSLGPGLGVGGGGVKGVAV-- 218
           P  P  H+ ++  DT  + ++         GAF+PF+KD ++G G       +  +A+  
Sbjct: 149 PQTPKEHSEHHPLDTSPKLITALDGGGGGGGAFLPFSKDNAMGDGSAAAAAALPELALAP 208

Query: 219 -----EMELLEKGEKKEKKNHCGDTNNNVDGGILTATEDRAERGTGEVGLAPTTSS---- 278
                +   +  GE  +KK +  D         + A    A+ G    G  P+T S    
Sbjct: 209 AEKAADAITIAAGE-VDKKPYAHDNG-------VVARSREAQNG----GKPPSTPSDGQA 268

Query: 279 --TTTQTHRKARRCWSPDLHRRFVNALRMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQ 338
                Q HRKARRCWSP+LHRRFVNAL++LGG+QVATPKQIRELMKVDGLTNDEVKSHLQ
Sbjct: 269 VPPPPQPHRKARRCWSPELHRRFVNALQILGGAQVATPKQIRELMKVDGLTNDEVKSHLQ 328

Query: 339 KYRLHTVRRPGLATQASGSPAAHLVVLGLGGLWVPPEY---ARSPTLYGPPATSHPPSHF 380
           KYRLHT RRP  +     +    LVV  LGG+WVPPEY   A  P +YG    + P    
Sbjct: 329 KYRLHT-RRPMPSPAPPTAATPQLVV--LGGIWVPPEYATQAAGPAIYGAHPATQP---H 388

[Close]

BLAST of CmaCh11G005820 vs. ExPASy Swiss-Prot
Match: Q8VZS3 (Transcription factor HHO2 OS=Arabidopsis thaliana OX=3702 GN=HHO2 PE=1 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.8e-41
Identity = 127/346 (36.71%), Postives = 180/346 (52.02%), Query Frame = 0


Query: 39  KLQEFVSRLEQERLKIDVFKRELPLCMQLLTNAVETSRRQL---------QACKASEAPP 98
           K  E+V  LE+E+ KI VF+RELPLC++L+T A+E  R++L         Q  + + +  
Sbjct: 13  KCHEYVEALEEEQKKIQVFQRELPLCLELVTQAIEACRKELSGTTTTTSEQCSEQTTSVC 72

Query: 99  SKPVLEEFMPLKNSTTPDDE-------------KPPTILSDKANWMTSLQLWSRANKEYT 158
             PV EEF+P+K  ++  +E              P  + + K++W+ S+QLW+ +     
Sbjct: 73  GGPVFEEFIPIKKISSLCEEVQEEEEEDGEHESSPELVNNKKSDWLRSVQLWNHSPD--L 132

Query: 159 DPPHSHNNNNSDTRKQRVSNGAFVPFNK---DRSLGPGLGVGGGGVKGVAVEMELLEKGE 218
           +P        +   + +  +GAF PF K   +  L P +         VA  M       
Sbjct: 133 NPKEERVAKKAKVVEVKPKSGAFQPFQKRVLETDLQPAV--------KVASSMPATTTSS 192

Query: 219 KKEKKNHCGDTNNNVDGGILTATEDRAERGTGEVGLAPTTSSTTTQTHRKARRCWSPDLH 278
             E    CG  ++ +  G     E R E+             + + THRK RRCWSP+LH
Sbjct: 193 TTET---CGGKSDLIKAG---DEERRIEQ-----------QQSQSHTHRKQRRCWSPELH 252

Query: 279 RRFVNALRMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTVRRP---GLATQAS 338
           RRF+NAL+ LGGS VATPKQIR+ MKVDGLTNDEVKSHLQKYRLHT RRP    +A Q++
Sbjct: 253 RRFLNALQQLGGSHVATPKQIRDHMKVDGLTNDEVKSHLQKYRLHT-RRPAATSVAAQST 312

Query: 339 GSPAAHLVVLGLGGLWVPPEYARSPTLYGPPATSHPPSHFYTPASV 357
           G+      V+ +GG+WVP     S   + PP+        Y P +V
Sbjct: 313 GNQQQPQFVV-VGGIWVP-----SSQDFPPPSDVANKGGVYAPVAV 324

[Close]

BLAST of CmaCh11G005820 vs. ExPASy Swiss-Prot
Match: Q9FPE8 (Transcription factor HHO3 OS=Arabidopsis thaliana OX=3702 GN=HHO3 PE=1 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 3.0e-41
Identity = 122/336 (36.31%), Postives = 169/336 (50.30%), Query Frame = 0


Query: 39  KLQEFVSRLEQERLKIDVFKRELPLCMQLLTNAVETSRRQLQ--------ACKASEAPPS 98
           +  E+V  LE+E+ KI VF+RELPLC++L+T A+E+ R++L           + SE   S
Sbjct: 17  RCHEYVEALEEEQKKIQVFQRELPLCLELVTQAIESCRKELSESSEHVGGQSECSERTTS 76

Query: 99  K---PVLEEFMPLK------NSTTPDDEKPPTIL---------SDKANWMTSLQLWSRAN 158
           +    V EEFMP+K      + T  D+E   T +           K++W+ S+QLW+++ 
Sbjct: 77  ECGGAVFEEFMPIKWSSASSDETDKDEEAEKTEMMTNENNDGDKKKSDWLRSVQLWNQS- 136

Query: 159 KEYTDPPHSHNNNNSDTRKQRVSNGAFVPFNKDRSLGPGLGVGGGGVKGVAVEMELLEKG 218
                P    NN      + + S GAF PF K+              K  A + + L K 
Sbjct: 137 -----PDPQPNNKKPMVIEVKRSAGAFQPFQKE--------------KPKAADSQPLIKA 196

Query: 219 EKKEKKNHCGDTNNNVDGGILTATEDRAERGTGEVGLAPTTSSTTTQTHRKARRCWSPDL 278
                      T   V GG     E++ +                + ++RK RRCWSP+L
Sbjct: 197 ITPTSTTTTSSTAETVGGG--KEFEEQKQ----------------SHSNRKQRRCWSPEL 256

Query: 279 HRRFVNALRMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTVRRPGLATQASGS 338
           HRRF++AL+ LGGS VATPKQIR+LMKVDGLTNDEVKSHLQKYRLHT R      +  G 
Sbjct: 257 HRRFLHALQQLGGSHVATPKQIRDLMKVDGLTNDEVKSHLQKYRLHTRRPATPVVRTGGE 314

Query: 339 PAAHLVVLGLGGLWVPPEYARSPTLYGPPATSHPPS 349
                  + + G+WVP     +  +Y P AT  P S
Sbjct: 317 NPQQRQFMVMEGIWVPSHDTTNNRVYAPVATQPPQS 314

[Close]

BLAST of CmaCh11G005820 vs. ExPASy Swiss-Prot
Match: Q6Z869 (Transcription factor NIGT1 OS=Oryza sativa subsp. japonica OX=39947 GN=NIGT1 PE=2 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 9.7e-40
Identity = 142/410 (34.63%), Postives = 192/410 (46.83%), Query Frame = 0


Query: 39  KLQEFVSRLEQERLKIDVFKRELPLCMQLLTNAVETSRRQLQACKASE-----APPSKPV 98
           + +E++  LE+ER KI VF+RELPLC  L+T  +E  R Q+ A  + E      PP  PV
Sbjct: 14  RCREYLLALEEERRKIQVFQRELPLCFDLVTQTIEGMRSQMDAAGSEETVSDQGPP--PV 73

Query: 99  LEEFMPLK----------NSTTPDDEK-------------------PPTILSDKANWMTS 158
           LEEF+PLK           ST  D  K                   PP       +W+ S
Sbjct: 74  LEEFIPLKPSLSLSSSEEESTHADAAKSGKKEEAETSERHSSPPPPPPEAKKVTPDWLQS 133

Query: 159 LQLWSRANKEYTDPPHSHNNNNSDTR----KQRVSNGAFVPFNKDRSLGPGLGVGGGGVK 218
           +QLWS+   +    P      +   +      R + GAF PF K++       +      
Sbjct: 134 VQLWSQEEPQQPSSPSPTPTKDLPCKPVALNARKAGGAFQPFEKEKR----AELPASSTT 193

Query: 219 GVAVEMELLEKGEK----KEKKNHCGDTNNNVDGGILTATEDRAERGTGEVGLAPTTSST 278
             A    + + G+K      +K+   D +N+ D       +D+ + G             
Sbjct: 194 AAASSTVVGDSGDKPTDDDTEKHMETDKDNDKD------AKDKDKEG------------- 253

Query: 279 TTQTHRKARRCWSPDLHRRFVNALRMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYR 338
            +Q HRK RRCW+P+LHRRF+ AL+ LGGS VATPKQIRELMKVDGLTNDEVKSHLQKYR
Sbjct: 254 QSQPHRKPRRCWAPELHRRFLQALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYR 313

Query: 339 LHTVRRPGLATQASGS------PAAHLVVLGLGGLWV-PPEYARSPTLYGP---PATSHP 396
           LHT RRP    Q+S +      PA   VV  +G +WV PPEYA +          A  + 
Sbjct: 314 LHT-RRPSSTGQSSAAAGVPAPPAPQFVV--VGSIWVPPPEYAAAAAAQQHVQLAAAGNN 373

[Close]

BLAST of CmaCh11G005820 vs. TAIR 10
Match: AT2G03500.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 283.1 bits (723), Expect = 3.9e-76
Identity = 217/477 (45.49%), Postives = 277/477 (58.07%), Query Frame = 0


Query: 2   ASTQLSLECKVQSYSMLLQYSFGDQHQVPPNSDDFYYKLQEFVSRLEQERLKIDVFKREL 61
           +S++LSL+CK QSYSMLL+ SFGD  Q    SD   +KL++ +SRLEQERLKID FKREL
Sbjct: 3   SSSELSLDCKPQSYSMLLK-SFGDNFQ----SDPTTHKLEDLLSRLEQERLKIDAFKREL 62

Query: 62  PLCMQLLTNAVETSRRQLQACKA-----SEAPPSKPVLEEFMPLKNSTTPDDEKPPTILS 121
           PLCMQLL NAVE  ++QL+A +A     +++  ++PVLEEF+PL+N       +P    +
Sbjct: 63  PLCMQLLNNAVEVYKQQLEAYRANSNNNNQSVGTRPVLEEFIPLRN-------QPEKTNN 122

Query: 122 DKANWMTSLQLWSRANKE------YTDPPHSHNNNNSDTR------KQRVSNGAFVPFNK 181
             +NWMT+ QLWS++  +       TD     +  NS  +      KQR  +GAF+PF+K
Sbjct: 123 KGSNWMTTAQLWSQSETKPKNIDSTTDQSLPKDEINSSPKLGHFDAKQRNGSGAFLPFSK 182

Query: 182 DRSLGPGLGVGGGGVKGVAVEMELL--EKGEKKEKKNHCGDTNNNVDGGILTATEDRAER 241
           ++SL P L +    VK V+   E    + G  +   N+  + NNN          +    
Sbjct: 183 EQSL-PELAL-STEVKRVSPTNEHTNGQDGNDESMINNDNNYNNN---------NNNNSN 242

Query: 242 GTGEVGLAPTTSSTTTQTHRKARRCWSPDLHRRFVNALRMLGGSQVATPKQIRELMKVDG 301
             G        SSTT+Q++RKARRCWSPDLHRRFV AL+MLGGSQVATPKQIRELMKVDG
Sbjct: 243 SNG-------VSSTTSQSNRKARRCWSPDLHRRFVQALQMLGGSQVATPKQIRELMKVDG 302

Query: 302 LTNDEVKSHLQKYRLHTVRRPGLATQASGSPAAHLVVLGLGGLWVPPEYAR----SPTLY 361
           LTNDEVKSHLQKYRLHT RRP  + Q SG P  HLVV  LGG+WVPPEY      +PTLY
Sbjct: 303 LTNDEVKSHLQKYRLHT-RRPSPSPQTSGGPGPHLVV--LGGIWVPPEYTSAHGGTPTLY 362

Query: 362 GPPATSH-------PPSHFYTPASVPHEYYTRTIAPPHLQQHHHQVHLYKGES-TKAAQS 421
                 H       PP HF +      E+Y  T  PP    HHH    + G S   A+  
Sbjct: 363 HHQVHHHHTNTAGPPPPHFCS----SQEFY--TTPPPPQPLHHHHFQTFNGSSGGTASTD 422

Query: 422 SPASEVRDTAERSEILEEEKSEGGQNGEDRRIKGRGSWGRRLEGEES-NRSEVSLKF 447
           S   +V D    S  +E +  E G  G +R  KG  +     E   + N SE++LKF
Sbjct: 423 STHHQVTD----SPTVEGKSPESG--GGER--KGLAALREECEDHSNINGSEITLKF 432

[Close]

BLAST of CmaCh11G005820 vs. TAIR 10
Match: AT1G68670.1 (myb-like transcription factor family protein )

HSP 1 Score: 171.8 bits (434), Expect = 1.3e-42
Identity = 127/346 (36.71%), Postives = 180/346 (52.02%), Query Frame = 0


Query: 39  KLQEFVSRLEQERLKIDVFKRELPLCMQLLTNAVETSRRQL---------QACKASEAPP 98
           K  E+V  LE+E+ KI VF+RELPLC++L+T A+E  R++L         Q  + + +  
Sbjct: 13  KCHEYVEALEEEQKKIQVFQRELPLCLELVTQAIEACRKELSGTTTTTSEQCSEQTTSVC 72

Query: 99  SKPVLEEFMPLKNSTTPDDE-------------KPPTILSDKANWMTSLQLWSRANKEYT 158
             PV EEF+P+K  ++  +E              P  + + K++W+ S+QLW+ +     
Sbjct: 73  GGPVFEEFIPIKKISSLCEEVQEEEEEDGEHESSPELVNNKKSDWLRSVQLWNHSPD--L 132

Query: 159 DPPHSHNNNNSDTRKQRVSNGAFVPFNK---DRSLGPGLGVGGGGVKGVAVEMELLEKGE 218
           +P        +   + +  +GAF PF K   +  L P +         VA  M       
Sbjct: 133 NPKEERVAKKAKVVEVKPKSGAFQPFQKRVLETDLQPAV--------KVASSMPATTTSS 192

Query: 219 KKEKKNHCGDTNNNVDGGILTATEDRAERGTGEVGLAPTTSSTTTQTHRKARRCWSPDLH 278
             E    CG  ++ +  G     E R E+             + + THRK RRCWSP+LH
Sbjct: 193 TTET---CGGKSDLIKAG---DEERRIEQ-----------QQSQSHTHRKQRRCWSPELH 252

Query: 279 RRFVNALRMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTVRRP---GLATQAS 338
           RRF+NAL+ LGGS VATPKQIR+ MKVDGLTNDEVKSHLQKYRLHT RRP    +A Q++
Sbjct: 253 RRFLNALQQLGGSHVATPKQIRDHMKVDGLTNDEVKSHLQKYRLHT-RRPAATSVAAQST 312

Query: 339 GSPAAHLVVLGLGGLWVPPEYARSPTLYGPPATSHPPSHFYTPASV 357
           G+      V+ +GG+WVP     S   + PP+        Y P +V
Sbjct: 313 GNQQQPQFVV-VGGIWVP-----SSQDFPPPSDVANKGGVYAPVAV 324

[Close]

BLAST of CmaCh11G005820 vs. TAIR 10
Match: AT1G25550.1 (myb-like transcription factor family protein )

HSP 1 Score: 171.0 bits (432), Expect = 2.1e-42
Identity = 122/336 (36.31%), Postives = 169/336 (50.30%), Query Frame = 0


Query: 39  KLQEFVSRLEQERLKIDVFKRELPLCMQLLTNAVETSRRQLQ--------ACKASEAPPS 98
           +  E+V  LE+E+ KI VF+RELPLC++L+T A+E+ R++L           + SE   S
Sbjct: 17  RCHEYVEALEEEQKKIQVFQRELPLCLELVTQAIESCRKELSESSEHVGGQSECSERTTS 76

Query: 99  K---PVLEEFMPLK------NSTTPDDEKPPTIL---------SDKANWMTSLQLWSRAN 158
           +    V EEFMP+K      + T  D+E   T +           K++W+ S+QLW+++ 
Sbjct: 77  ECGGAVFEEFMPIKWSSASSDETDKDEEAEKTEMMTNENNDGDKKKSDWLRSVQLWNQS- 136

Query: 159 KEYTDPPHSHNNNNSDTRKQRVSNGAFVPFNKDRSLGPGLGVGGGGVKGVAVEMELLEKG 218
                P    NN      + + S GAF PF K+              K  A + + L K 
Sbjct: 137 -----PDPQPNNKKPMVIEVKRSAGAFQPFQKE--------------KPKAADSQPLIKA 196

Query: 219 EKKEKKNHCGDTNNNVDGGILTATEDRAERGTGEVGLAPTTSSTTTQTHRKARRCWSPDL 278
                      T   V GG     E++ +                + ++RK RRCWSP+L
Sbjct: 197 ITPTSTTTTSSTAETVGGG--KEFEEQKQ----------------SHSNRKQRRCWSPEL 256

Query: 279 HRRFVNALRMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTVRRPGLATQASGS 338
           HRRF++AL+ LGGS VATPKQIR+LMKVDGLTNDEVKSHLQKYRLHT R      +  G 
Sbjct: 257 HRRFLHALQQLGGSHVATPKQIRDLMKVDGLTNDEVKSHLQKYRLHTRRPATPVVRTGGE 314

Query: 339 PAAHLVVLGLGGLWVPPEYARSPTLYGPPATSHPPS 349
                  + + G+WVP     +  +Y P AT  P S
Sbjct: 317 NPQQRQFMVMEGIWVPSHDTTNNRVYAPVATQPPQS 314

[Close]

BLAST of CmaCh11G005820 vs. TAIR 10
Match: AT3G25790.1 (myb-like transcription factor family protein )

HSP 1 Score: 154.1 bits (388), Expect = 2.7e-37
Identity = 112/320 (35.00%), Postives = 163/320 (50.94%), Query Frame = 0


Query: 39  KLQEFVSRLEQERLKIDVFKRELPLCMQLLTNAVETSRRQLQA-----------CKASEA 98
           K  E++  LE+ER KI+VF+RELPLC++L+T A+E  +R++             C     
Sbjct: 17  KCCEYIEALEEERRKINVFQRELPLCVELVTQAIEAYKREISGTSTDNLYGQSECSEQTT 76

Query: 99  PPSKPVLEEFMPLKNSTT----------PDDEKPPTILSD--------KANWMTSLQLWS 158
                +L+ F+P+K+S+T           DDE+  +  +D        K+ W+ S+QLW+
Sbjct: 77  GECGRILDLFIPIKHSSTSIEEEVDDKDDDDEEHQSHETDIDFDDKNMKSEWLKSVQLWN 136

Query: 159 RANKEYTDPPHSHNNNNSDTRKQRVSNGAFVPFNKDRSLGPGLGVGGGGVKGVAVEMELL 218
           +++          +NN  D  +++                                +EL+
Sbjct: 137 QSDAVV-------SNNRQDRSQEKTE----------------------------TLVELI 196

Query: 219 EKGEKKEKKNHCGDTNNNVDGGILTATEDRAERGTGEVGLAPTTSSTTTQTHRKARRCWS 278
           +  ++  KK      NNN+   + T     ++ G+G  G          +  RK RRCWS
Sbjct: 197 KINDEAAKK------NNNIKSPVTT-----SDGGSGGGG--------GRRGQRKNRRCWS 256

Query: 279 PDLHRRFVNALRMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTVRRPGLATQA 329
            +LHRRF+NAL+ LGG  VATPKQIR++MKVDGLTNDEVKSHLQKYRLH  RRP   T  
Sbjct: 257 QELHRRFLNALKQLGGPHVATPKQIRDIMKVDGLTNDEVKSHLQKYRLH-ARRPSQTTPN 279

[Close]

BLAST of CmaCh11G005820 vs. TAIR 10
Match: AT1G13300.1 (myb-like transcription factor family protein )

HSP 1 Score: 147.9 bits (372), Expect = 1.9e-35
Identity = 119/331 (35.95%), Postives = 159/331 (48.04%), Query Frame = 0


Query: 42  EFVSRLEQERLKIDVFKRELPLCMQLLTNAVETSRRQL-----------QACKASEAPPS 101
           +++  LE+ER KI VF+RELPLC+ L+T A+E  +R+L             C        
Sbjct: 19  QYIEALEEERRKIHVFQRELPLCLDLVTQAIEACKRELPEMTTENMYGQPECSEQTTGEC 78

Query: 102 KPVLEEFMPLKNSTTPDDEK------------PPTILSD---KANWMTSLQLWSRANKEY 161
            PVLE+F+ +K+S+T ++E+            P     D   K++W+ S+QLW++ +   
Sbjct: 79  GPVLEQFLTIKDSSTSNEEEDEEFDDEHGNHDPDNDSEDKNTKSDWLKSVQLWNQPD--- 138

Query: 162 TDPPHSHNNNNSDTRKQRVSNGAFVPFNKDRSLGPGLGVGGGGVKGVAVEMELLEKGEKK 221
                 H     + R Q+ +        +D S+     V GG             +G K+
Sbjct: 139 ------HPLLPKEERLQQET------MTRDESMRKDPMVNGG-------------EGRKR 198

Query: 222 EKKNHCGDTNNNVDGGILTATEDRAERGTGEVGLAPTTSSTTTQTHRKARRCWSPDLHRR 281
           E +          DGG                              RK RRCWS  LHRR
Sbjct: 199 EAEK---------DGG----------------------------GGRKQRRCWSSQLHRR 258

Query: 282 FVNALRMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTVRRPGLATQASG-SPA 341
           F+NAL+ LGG  VATPKQIRE MKVDGLTNDEVKSHLQKYRLHT RRP      +G S  
Sbjct: 259 FLNALQHLGGPHVATPKQIREFMKVDGLTNDEVKSHLQKYRLHT-RRPRQTVPNNGNSQT 281

Query: 342 AHLVVLGLGGLWVP-PEYARSPTLYGPPATS 345
            H VV  +GGLWVP  +Y+   T  G   +S
Sbjct: 319 QHFVV--VGGLWVPQSDYSTGKTTGGATTSS 281

The following BLAST results are available for this feature:

BLAST of CmaCh11G005820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZQ85	5.4e-75	45.49	Myb family transcription factor EFM OS=Arabidopsis thaliana OX=3702 GN=EFM PE=1 ...	[more]
Q5VRW2	3.5e-58	43.44	Transcription factor NIGTH1 OS=Oryza sativa subsp. japonica OX=39947 GN=NHO1 PE=...	[more]
Q8VZS3	1.8e-41	36.71	Transcription factor HHO2 OS=Arabidopsis thaliana OX=3702 GN=HHO2 PE=1 SV=1	[more]
Q9FPE8	3.0e-41	36.31	Transcription factor HHO3 OS=Arabidopsis thaliana OX=3702 GN=HHO3 PE=1 SV=1	[more]
Q6Z869	9.7e-40	34.63	Transcription factor NIGT1 OS=Oryza sativa subsp. japonica OX=39947 GN=NIGT1 PE=...	[more]

BLAST of CmaCh11G005820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G03500.1	3.9e-76	45.49	Homeodomain-like superfamily protein	[more]
AT1G68670.1	1.3e-42	36.71	myb-like transcription factor family protein	[more]
AT1G25550.1	2.1e-42	36.31	myb-like transcription factor family protein	[more]
AT3G25790.1	2.7e-37	35.00	myb-like transcription factor family protein	[more]
AT1G13300.1	1.9e-35	35.95	myb-like transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 40..60
None	No IPR available	GENE3D	1.10.10.60		coord: 242..300 e-value: 2.6E-26 score: 93.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 225..245
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 228..243
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 370..446
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 397..446
None	No IPR available	PANTHER	PTHR31003:SF19	HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 3..442
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 243..298 e-value: 3.7E-26 score: 89.2
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 245..296 e-value: 1.1E-5 score: 25.5
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 240..300 score: 14.234947
IPR044787	Myb family transcription factor HRS1-like	PANTHER	PTHR31003	MYB FAMILY TRANSCRIPTION FACTOR	coord: 3..442
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 240..299

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G005820.1	CmaCh11G005820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity