CmaCh03G003880 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G003880
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr03: 4379822 .. 4380279 (+)
RNA-Seq Expression	CmaCh03G003880
Synteny	CmaCh03G003880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTCCTCTTGGATGGTGTTGGTTCCTCTATTTATATTAGCCTCATCTGAAACATCCTCGAGGTGTTCGTGAATGAGATGTCGATGTAGGTTTGACAACCTGTGAATCGAACTCAAGACATCTATACCTCCTTCCATGTAATAGAAAACATCGTTAGTTTGGGCGTTCTGGTTTTAAAAGACATTCGTTTTATCTCCTAGATGTCTCGACTCAACAAAGCTCATAGAAAAATTAGGTCCATATAAAAATCTGAGATATTGACATGTTTTAGGAGGAGGTTTCCATATAAGCTCGATCAATTAGGTCCAATTTGCAAAAGGTTAACGGGCTGGGTTGGTGCGGACAGCCCAAACTCCAAGAAGCTGGGCTGGGCTGCCTCCATTGCGCAGGAAGTCGCGAGAAGCTCCTCGATGATTCTGGGTTCGAAGCCATGGCCATGCAGGGGAGGAAGGTAG

mRNA sequence

ATGGTGTCCTCTTGGATGGTGTTGAAAACATCGAGGAGGTTTCCATATAAGCTCGATCAATTAGGTCCAATTTGCAAAAGGTTAACGGGCTGGGTTGGTGCGGACAGCCCAAACTCCAAGAAGCTGGGCTGGGCTGCCTCCATTGCGCAGGAAGTCGCGAGAAGCTCCTCGATGATTCTGGGTTCGAAGCCATGGCCATGCAGGGGAGGAAGGTAG

Coding sequence (CDS)

ATGGTGTCCTCTTGGATGGTGTTGAAAACATCGAGGAGGTTTCCATATAAGCTCGATCAATTAGGTCCAATTTGCAAAAGGTTAACGGGCTGGGTTGGTGCGGACAGCCCAAACTCCAAGAAGCTGGGCTGGGCTGCCTCCATTGCGCAGGAAGTCGCGAGAAGCTCCTCGATGATTCTGGGTTCGAAGCCATGGCCATGCAGGGGAGGAAGGTAG

Protein sequence

MVSSWMVLKTSRRFPYKLDQLGPICKRLTGWVGADSPNSKKLGWAASIAQEVARSSSMILGSKPWPCRGGR

Homology

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BLAST of CmaCh03G003880 vs. NCBI nr
Match: KAG6603616.1 (17.6 kDa class I heat shock protein 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.0 bits (149), Expect = 2.4e-06
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 16 YKLDQLGPICKRLTGWVGADSPNSKKLG 44
          YKLDQLGPICKRLTGW GADSPNSK+LG
Sbjct: 8  YKLDQLGPICKRLTGWAGADSPNSKQLG 35

The following BLAST results are available for this feature:

BLAST of CmaCh03G003880 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh03G003880 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh03G003880 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603616.1	2.4e-06	92.86	17.6 kDa class I heat shock protein 3, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of CmaCh03G003880 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G003880.1	CmaCh03G003880.1	mRNA